mRNA_H-paniculata_contig13205.2011.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13205.2011.1
Unique NamemRNA_H-paniculata_contig13205.2011.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13205.2011.1 vs. uniprot
Match: D8LDF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF2_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 9.820e-44
Identity = 78/178 (43.82%), Postives = 115/178 (64.61%), Query Frame = 1 
Query:    1 QAVFCGILDGKRFDALATKVYFPFILVGSGLIISACIEIDELRDMRQPPGQEFTAYQVAVCVTLLMVILLAVLWHFAEAWRIFPGARMVSGQATNPALTSAESMETNPLRDYLLSRTLVVAYVMLYIAFAFEKGDGWGYHYILLAWALSLLSRFTSTASIAWLAITSAAFLQGIGAYS 534
            QA FC I++ +RF  LA+KVYFP ++VG+ L +S     + LR+  Q   ++ T +QVA+ + LL++ ++ +L HFAEAW++ PGA ++SG    P +   E +    L  Y+ SR L++AY +LY AF+  + DGWGY   LLAW LSL ++F S  S+ WLA+T+  FLQGIG  S
Sbjct:   91 QAWFCEIMEERRFRDLASKVYFPLLMVGAALALSGLSRAESLRNSLQEERRDLTTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHLISGVGV-PRVEVREDL----LSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIGNQS 263
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BLAST of mRNA_H-paniculata_contig13205.2011.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.480e-41
Identity = 75/185 (40.54%), Postives = 111/185 (60.00%), Query Frame = 1 
Query:    4 AVFCGILDGKRFDALATKVYFPFILVGSGLIISACIEIDELRDMRQPPGQEFTAYQVAVCVTLLMVILLAVLWHFAEAWRIFPGA----RMVSGQATNPALTSAESMETNPLRDYLLSRTLVVAYVMLYIAFAFEKGDGWGYHYILLAWALSLLSRFTSTASIAWLAITSAAFLQGIGAYSLRFL 546
            A  CGIL+G R+ AL+ K+YFP +++ SGL  SA +  D    +  P G + +  + A+ + LL+++ L   +H+  AW+  PG      MVSGQ   P      S   N    Y+ S T+++ Y++L+ AFA+ +GD W YHY+LLAW +SL++ F    S+AWL IT+  FLQG+GAYS R L
Sbjct:   94 AFMCGILNGTRYHALSKKMYFPVLVIASGLATSALMNNDGFEGLHDPGG-DLSPAEAALSIILLILVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPP---PPSRAENRYLQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVL 274
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BLAST of mRNA_H-paniculata_contig13205.2011.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.460e-29
Identity = 57/138 (41.30%), Postives = 83/138 (60.14%), Query Frame = 1 
Query:  145 PGQEFTAYQVAVCVTLLMVILLAVLWHFAEAWRIFPGA----RMVSGQATNPALTSAESMETNPLRDYLLSRTLVVAYVMLYIAFAFEKGDGWGYHYILLAWALSLLSRFTSTASIAWLAITSAAFLQGIGAYSLRFL 546
            PG E +  + A+ + LL+++ L   +H+  AW+  PG      MVSGQ   P      S   N    Y+ S T+++ Y++L+ AFA+ +GD W YHY+LLAW +SL++ F    S+AWL IT+  FLQG+GAYS R L
Sbjct:   12 PGGELSPAEAALSIILLVLVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPP---PPSRAENRYLQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVL 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13205.2011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDF2_ECTSI9.820e-4443.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JMR1_9PHAE1.480e-4140.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1N8_ECTSI1.460e-2941.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13205contigH-paniculata_contig13205:4233..5261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size582
Cds size582
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929046.2451484-CDS-H-paniculata_contig13205:4232..47281622929046.2451484-CDS-H-paniculata_contig13205:4232..4728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13205 4233..4728 -
1691480710.9332848-CDS-H-paniculata_contig13205:4232..47281691480710.9332848-CDS-H-paniculata_contig13205:4232..4728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13205 4233..4728 -
1622929046.2616048-CDS-H-paniculata_contig13205:5175..52611622929046.2616048-CDS-H-paniculata_contig13205:5175..5261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13205 5176..5261 -
1691480710.941453-CDS-H-paniculata_contig13205:5175..52611691480710.941453-CDS-H-paniculata_contig13205:5175..5261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13205 5176..5261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13205.2011.1prot_H-paniculata_contig13205.2011.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13205 4233..5261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13205.2011.1

>prot_H-paniculata_contig13205.2011.1 ID=prot_H-paniculata_contig13205.2011.1|Name=mRNA_H-paniculata_contig13205.2011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
QAVFCGILDGKRFDALATKVYFPFILVGSGLIISACIEIDELRDMRQPPG
QEFTAYQVAVCVTLLMVILLAVLWHFAEAWRIFPGARMVSGQATNPALTS
AESMETNPLRDYLLSRTLVVAYVMLYIAFAFEKGDGWGYHYILLAWALSL
LSRFTSTASIAWLAITSAAFLQGIGAYSLRFLWSQEWSGLNAE*
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mRNA from alignment at H-paniculata_contig13205:4233..5261-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13205.2011.1 ID=mRNA_H-paniculata_contig13205.2011.1|Name=mRNA_H-paniculata_contig13205.2011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1029bp|location=Sequence derived from alignment at H-paniculata_contig13205:4233..5261- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCTGTCTTCTGCGGAATTCTCGACGGGAAGCGTTTCGACGCCCTGGC
AACTAAAGTCTATTTCCCCTTCATCCTTGTTGGAAGGTGACCATATGCGA
TTCGTTTGACTACCCGTAAAATAATAGATGGTAATTCCATGTGGAAACTG
TTTGTTGCGACGAAGATATTGCCTTTTCACTTTCGGTACAGCAAGCACTA
CCCGTCGATACGGTGCGTATTCCACGCGTTTAGCATTGACGAGGACCTAC
CACCAATAAAATTGATACTTGCTCTGTGCAAGCATATGATGACGAGGTGC
ATTGAAAGTCTGTCGTTTTTGTGTTTCGGTCCTTCTGCTGCCCAAGGGCT
TGCCGGAGGCTTCGTGCCGTCTTTAGTTATTATTAGTAAGCACGCAAACG
AGCCCGTGTGATGCGAAAGTACCCCCCCATCTTCCTCCCCCCTATAGATC
TTACTTTGATAATATAGTACACAACTGAACCGCTCCCCCATCCGCCCGCA
CGCGTGCGCCCCGTGTCGTCCTCCCCGCTTCAGTGGATTAATAATCTCGG
CCTGTATCGAAATCGACGAGCTGAGGGATATGCGCCAACCACCAGGCCAA
GAGTTCACGGCCTACCAAGTTGCGGTATGTGTGACGTTACTCATGGTAAT
TCTATTGGCGGTACTGTGGCACTTCGCAGAGGCTTGGAGGATCTTCCCGG
GCGCACGCATGGTCTCCGGACAGGCGACAAACCCAGCGTTGACATCTGCG
GAGTCTATGGAGACCAATCCTCTGCGCGACTACCTACTCTCTCGCACCTT
GGTTGTTGCGTACGTTATGCTGTACATCGCTTTTGCCTTTGAGAAAGGAG
ATGGATGGGGCTATCACTACATTCTGCTGGCATGGGCGTTGTCGTTACTG
TCGAGGTTCACTTCTACCGCCAGCATTGCGTGGCTTGCGATTACCTCTGC
TGCGTTTTTACAAGGGATTGGGGCGTATAGCCTTCGATTCCTCTGGTCTC
AAGAGTGGTCGGGCCTTAACGCGGAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig13205:4233..5261-

>mRNA_H-paniculata_contig13205.2011.1 ID=mRNA_H-paniculata_contig13205.2011.1|Name=mRNA_H-paniculata_contig13205.2011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig13205:4233..5261- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCTGTCTTCTGCGGAATTCTCGACGGGAAGCGTTTCGACGCCCTGGC
AACTAAAGTCTATTTCCCCTTCATCCTTGTTGGAAGCAGGCTGTCTTCTG
CGGAATTCTCGACGGGAAGCGTTTCGACGCCCTGGCAACTAAAGTCTATT
TCCCCTTCATCCTTGTTGGAAGTGGATTAATAATCTCGGCCTGTATCGAA
ATCGACGAGCTGAGGGATATGCGCCAACCACCAGGCCAAGAGTTCACGGC
CTACCAAGTTGCGGTATGTGTGACGTTACTCATGGTAATTCTATTGGCGG
TACTGTGGCACTTCGCAGAGGCTTGGAGGATCTTCCCGGGCGCACGCATG
GTCTCCGGACAGGCGACAAACCCAGCGTTGACATCTGCGGAGTCTATGGA
GACCAATCCTCTGCGCGACTACCTACTCTCTCGCACCTTGGTTGTTGCGT
ACGTTATGCTGTACATCGCTTTTGCCTTTGAGAAAGGAGATGGATGGGGC
TATCACTACATTCTGCTGGCATGGGCGTTGTCGTTACTGTCGAGGTTCAC
TTCTACCGCCAGCATTGCGTGGCTTGCGATTACCTCTGCTGCGTTTTTAC
AAGGGATTGGGGCGTATAGCCTTCGATTCCTCTGGTCTCAAGAGTGGTCG
GGCCTTAACGCGGAATAATGGATTAATAATCTCGGCCTGTATCGAAATCG
ACGAGCTGAGGGATATGCGCCAACCACCAGGCCAAGAGTTCACGGCCTAC
CAAGTTGCGGTATGTGTGACGTTACTCATGGTAATTCTATTGGCGGTACT
GTGGCACTTCGCAGAGGCTTGGAGGATCTTCCCGGGCGCACGCATGGTCT
CCGGACAGGCGACAAACCCAGCGTTGACATCTGCGGAGTCTATGGAGACC
AATCCTCTGCGCGACTACCTACTCTCTCGCACCTTGGTTGTTGCGTACGT
TATGCTGTACATCGCTTTTGCCTTTGAGAAAGGAGATGGATGGGGCTATC
ACTACATTCTGCTGGCATGGGCGTTGTCGTTACTGTCGAGGTTCACTTCT
ACCGCCAGCATTGCGTGGCTTGCGATTACCTCTGCTGCGTTTTTACAAGG
GATTGGGGCGTATAGCCTTCGATTCCTCTGGTCTCAAGAGTGGTCGGGCC
TTAACGCGGAATAA
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