mRNA_H-paniculata_contig132.2007.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig132.2007.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 6.660e-18 Identity = 77/218 (35.32%), Postives = 102/218 (46.79%), Query Frame = 1
Query: 10 DVRRHGHVPTACACERADYKGYGGNGRCRADG*VGGLQRMLHC---QGSLIRRAEKIDKRATWAAERLYVDLGGPMLVISLGSSSYMMIIIDDYLR-----FQV*KSDPAAALQSYLADYMTAK-GFKIGVIRKDNGGEFDGDFHLKLDDHGITHVLTSPDTPQYNDVAERRLGLVREEMIALMQDQKE-----GSSEKLWAEVMNYTADINMSCTSS 621
D HGH + A +G G G L L C +G + ++ D RA RL+++LGG M S+G + Y +II DD R F KSD AAA + YLADY ++ V R D GGEF G F GI T P+TP+YN VAER LGL+ + +A KE S LWAE ++ A M+CT++
Sbjct: 138 DHNSHGHTHEELLQKTAKQQGVQLTG--------GPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAIS-CACHQMNCTAT 346
BLAST of mRNA_H-paniculata_contig132.2007.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 7.800e-16 Identity = 69/201 (34.33%), Postives = 98/201 (48.76%), Query Frame = 1
Query: 109 VGGLQRMLHC---QGSLIRRAEKIDKRATWAAERLYVDLGGPMLVISLGSSSYMMIIIDDYLR-----FQV*KSDPAAALQSYLADYMTAKGFK--IGVIRKDNGGEF-DGDFHLKLDDHGITHVLTSPDTPQYNDVAERRLGLVREEMIALMQDQKE-----GSSEKLWAEVMNYTAD-INMSCTSSIDGNVTRYEKWSG 660
VG L+ L C +G K RA +R++VDL G V SLG Y +I+ DDY R F KSD A A + YLA+ A G + V+R DNGGEF +G+F + I T +P+YN VAER LGL+++ +A + LWAE + ++ + +N + T+S + YE W G
Sbjct: 702 VGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENR-ANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHG 901
BLAST of mRNA_H-paniculata_contig132.2007.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 7.850e-16 Identity = 69/201 (34.33%), Postives = 98/201 (48.76%), Query Frame = 1
Query: 109 VGGLQRMLHC---QGSLIRRAEKIDKRATWAAERLYVDLGGPMLVISLGSSSYMMIIIDDYLR-----FQV*KSDPAAALQSYLADYMTAKGFK--IGVIRKDNGGEF-DGDFHLKLDDHGITHVLTSPDTPQYNDVAERRLGLVREEMIALMQDQKE-----GSSEKLWAEVMNYTAD-INMSCTSSIDGNVTRYEKWSG 660
VG L+ L C +G K RA +R++VDL G V SLG Y +I+ DDY R F KSD A A + YLA+ A G + V+R DNGGEF +G+F + I T +P+YN VAER LGL+++ +A + LWAE + ++ + +N + T+S + YE W G
Sbjct: 537 VGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENR-ANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHG 736
BLAST of mRNA_H-paniculata_contig132.2007.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 7.890e-16 Identity = 69/201 (34.33%), Postives = 98/201 (48.76%), Query Frame = 1
Query: 109 VGGLQRMLHC---QGSLIRRAEKIDKRATWAAERLYVDLGGPMLVISLGSSSYMMIIIDDYLR-----FQV*KSDPAAALQSYLADYMTAKGFK--IGVIRKDNGGEF-DGDFHLKLDDHGITHVLTSPDTPQYNDVAERRLGLVREEMIALMQDQKE-----GSSEKLWAEVMNYTAD-INMSCTSSIDGNVTRYEKWSG 660
VG L+ L C +G K RA +R++VDL G V SLG Y +I+ DDY R F KSD A A + YLA+ A G + V+R DNGGEF +G+F + I T +P+YN VAER LGL+++ +A + LWAE + ++ + +N + T+S + YE W G
Sbjct: 550 VGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENR-ANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHG 749
BLAST of mRNA_H-paniculata_contig132.2007.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 7.940e-16 Identity = 69/201 (34.33%), Postives = 98/201 (48.76%), Query Frame = 1
Query: 109 VGGLQRMLHC---QGSLIRRAEKIDKRATWAAERLYVDLGGPMLVISLGSSSYMMIIIDDYLR-----FQV*KSDPAAALQSYLADYMTAKGFK--IGVIRKDNGGEF-DGDFHLKLDDHGITHVLTSPDTPQYNDVAERRLGLVREEMIALMQDQKE-----GSSEKLWAEVMNYTAD-INMSCTSSIDGNVTRYEKWSG 660
VG L+ L C +G K RA +R++VDL G V SLG Y +I+ DDY R F KSD A A + YLA+ A G + V+R DNGGEF +G+F + I T +P+YN VAER LGL+++ +A + LWAE + ++ + +N + T+S + YE W G
Sbjct: 693 VGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENR-ANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHG 892
BLAST of mRNA_H-paniculata_contig132.2007.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.280e-15 Identity = 63/177 (35.59%), Postives = 90/177 (50.85%), Query Frame = 1
Query: 178 RATWAAERLYVDLGGPMLVISLGSSSYMMIIIDDYLR-----FQV*KSDPAAALQSYLADYMTAKGF--KIGVIRKDNGGEF-----DGDFHLKLDDHGITHVLTSPDTPQYNDVAERRLGLVREEMIA-------LMQDQKEGSSEKLWAEVMNYTA-DINMSCTSSIDGNVTRYE 648
RA R+Y+DLGG M S+G + Y +II DD+ R F KS A + + AD+ T KG ++ + R D GGEF +G F HGI T P+TP+YN VAER LGL+ + +A L D + +LWAE ++ +N + T S +G+ + YE
Sbjct: 16 RAVKMLSRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSGAAVGFEKFPADHRT-KGVPREVYIARTDGGGEFQGQFAEGQFAEVCRRHGIKQEFTPPNTPKYNGVAERALGLITDAALASRIQATQLFPDAP--NHPRLWAEAISCACHQLNCTATKSNEGDKSAYE 189
BLAST of mRNA_H-paniculata_contig132.2007.1 vs. uniprot
Match: A0A075B3L7_ROZAC (Integrase, catalytic core domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B3L7_ROZAC) HSP 1 Score: 83.2 bits (204), Expect = 1.490e-14 Identity = 52/161 (32.30%), Postives = 80/161 (49.69%), Query Frame = 1
Query: 196 ERLYVDLGGPMLVISLGSSSYMMIIIDDY-----LRFQV*KSDPAAALQSYLADYMTAKGFKIGVIRKDNGGEF-DGDFHLKLDDHGITHVLTSPDTPQYNDVAERRLGLVREEMIALMQDQKEGSSEKLWAEVMNYTADINMSCTSSIDGNVTRYEKWSG 660
E L+ DL GPM V + Y+ ++IDD+ +R K++ L+ + T G K+ +R D GGEF DGD + GI H LT TP+ N AER+ GL+ L+ ++ G + W E++N + +SI GN+T E ++G
Sbjct: 42 EVLHTDLCGPMQVETPSGKRYVHVVIDDFSRMCWIRLLRNKAEAKVTLREIITFIETQSGRKVKTVRSDRGGEFVDGDLQKYFTEKGIKHYLTDKYTPEMNGTAERKNGLLMAAARCLL--RQAGLPDTFWGEMVNTACYLQNRTPTSILGNITPVEAFTG 200
BLAST of mRNA_H-paniculata_contig132.2007.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 3.710e-14 Identity = 57/149 (38.26%), Postives = 76/149 (51.01%), Query Frame = 1
Query: 238 SLGSSSYMMIIIDDYLR-----FQV*KSDPAAALQSYLADYMTAK-GFKIGVIRKDNGGEFDGDFHLKLDDHGITHVLTSPDTPQYNDVAERRLGLVREEMIALMQDQKE-----GSSEKLWAEVMNYTA-DINMSCTSSIDGNVTRYE 648
S+G + Y +II DD R F KSD AAA + YLADY ++ V R D GGEF G F +GI T P+TP+YN VAER LGL+ + +A KE S LWAE ++ +N + T+ G+ + YE
Sbjct: 5 SIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPYE 153
BLAST of mRNA_H-paniculata_contig132.2007.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 3.830e-14 Identity = 67/201 (33.33%), Postives = 95/201 (47.26%), Query Frame = 1
Query: 109 VGGLQRMLHC---QGSLIRRAEKIDKRATWAAERLYVDLGGPMLVISLGSSSYMMIIIDDYLR-----FQV*KSDPAAALQSYLADYMTAKGFK--IGVIRKDNGGEF-DGDFHLKLDDHGITHVLTSPDTPQYNDVAERRLGLVREEMIALMQDQKE-----GSSEKLWAEVMNYTAD-INMSCTSSIDGNVTRYEKWSG 660
VG L+ L C +G K RA +R +V+L G SLG Y +I+ DDY R F KSD A A + YL + A G + V+R DNGGEF +G+F + I T +P+YN VAER LGL+++ IA + LWAE + ++ + +N + T+S + YE W G
Sbjct: 335 VGELRECLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKE-KRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHG 534
BLAST of mRNA_H-paniculata_contig132.2007.1 vs. uniprot
Match: A0A8J5F3M1_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3M1_ZINOF) HSP 1 Score: 79.0 bits (193), Expect = 4.020e-13 Identity = 57/182 (31.32%), Postives = 85/182 (46.70%), Query Frame = 1
Query: 136 CQGSLIRRAEKID-----KRATWAAERLYVDLGGPMLVISLGSSSYMMIIIDDYLRFQ-----V*KSDPAAALQSYLADYMTAKGFKIGVIRKDNGGEF-DGDFHLKLDDHGITHVLTSPDTPQYNDVAERRLGLVREEMIALMQDQKEGSSEKLWAEVMNYTADINMSCTSSIDGNVTRYE 648
C+G ++ ++ R T ER++ DL GP S +YM++ +DDY RF K + + + G KI +R DNGGEF +F D+GI L+ PDTPQ N+VAER++ + E + + +K ++LWAE MN A + S N YE
Sbjct: 338 CEGCQFGKSHRLPFENSTSRCTTPLERIHSDLMGPTKTTSYSEGNYMLLFVDDYSRFTWVYFVKHKPETFSIFLDFKKIVEGELGRKIKTLRIDNGGEFCSNEFLSFCRDNGIKRELSCPDTPQQNEVAERKIRHLVETCKSWLHTKK--LPKELWAEGMNCAAHVINRTPLSSTNNKAPYE 517 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig132.2007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig132.2007.1 >prot_H-paniculata_contig132.2007.1 ID=prot_H-paniculata_contig132.2007.1|Name=mRNA_H-paniculata_contig132.2007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp MTAKGFKIGVIRKDNGGEFDGDFHLKLDDHGITHVLTSPDTPQYNDVAERback to top mRNA from alignment at H-paniculata_contig132:40323..41071+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig132.2007.1 ID=mRNA_H-paniculata_contig132.2007.1|Name=mRNA_H-paniculata_contig132.2007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=749bp|location=Sequence derived from alignment at H-paniculata_contig132:40323..41071+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig132:40323..41071+ >mRNA_H-paniculata_contig132.2007.1 ID=mRNA_H-paniculata_contig132.2007.1|Name=mRNA_H-paniculata_contig132.2007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig132:40323..41071+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |