mRNA_H-paniculata_contig132.2001.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig132.2001.1
Unique NamemRNA_H-paniculata_contig132.2001.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig132.2001.1 vs. uniprot
Match: A0A6H5K730_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K730_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.820e-16
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:    1 LCTSFRQHEELDASGALLTMSVSPTGGIEGMSLVS-GGSAGVVPFTFPVSMALSVGIQGLPSGQPYRGEIYGSDITYYIATDPSAVTSTPTKPSISDL 291
            LCT+F+ HE+LD S AL+T++ +  G I GM L + GG AGV+P T P S A  V  +GLP GQPY  E YGSD+T+Y+A+    +     KP+ +DL
Sbjct:  678 LCTNFKHHEDLDGSNALVTITKTSDGDISGMELSNTGGRAGVIPVTVPTSFADKVSTEGLPDGQPYSKETYGSDLTFYVASSSDDIPPAVVKPTAADL 775
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig132.2001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K730_9PHAE2.820e-1647.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig132contigH-paniculata_contig132:2011..7766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog2880.D8LJM4
Hectar predicted targeting categoryother localisation
EggNOG OGs28IRF@1,2QR2R@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1825
Cds size372
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929043.0086522-UTR-H-paniculata_contig132:2010..34021622929043.0086522-UTR-H-paniculata_contig132:2010..3402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig132 2011..3402 -
1691480710.5743167-UTR-H-paniculata_contig132:2010..34021691480710.5743167-UTR-H-paniculata_contig132:2010..3402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig132 2011..3402 -
1622929043.0190907-UTR-H-paniculata_contig132:3414..34181622929043.0190907-UTR-H-paniculata_contig132:3414..3418Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig132 3415..3418 -
1691480710.5892103-UTR-H-paniculata_contig132:3414..34181691480710.5892103-UTR-H-paniculata_contig132:3414..3418Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig132 3415..3418 -
1622929043.084328-UTR-H-paniculata_contig132:7709..77661622929043.084328-UTR-H-paniculata_contig132:7709..7766Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig132 7710..7766 -
1691480710.6576266-UTR-H-paniculata_contig132:7709..77661691480710.6576266-UTR-H-paniculata_contig132:7709..7766Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig132 7710..7766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929043.0332685-CDS-H-paniculata_contig132:3418..34881622929043.0332685-CDS-H-paniculata_contig132:3418..3488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig132 3419..3488 -
1691480710.600794-CDS-H-paniculata_contig132:3418..34881691480710.600794-CDS-H-paniculata_contig132:3418..3488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig132 3419..3488 -
1622929043.0480473-CDS-H-paniculata_contig132:5321..53961622929043.0480473-CDS-H-paniculata_contig132:5321..5396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig132 5322..5396 -
1691480710.6164951-CDS-H-paniculata_contig132:5321..53961691480710.6164951-CDS-H-paniculata_contig132:5321..5396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig132 5322..5396 -
1622929043.0606592-CDS-H-paniculata_contig132:6170..62951622929043.0606592-CDS-H-paniculata_contig132:6170..6295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig132 6171..6295 -
1691480710.6344674-CDS-H-paniculata_contig132:6170..62951691480710.6344674-CDS-H-paniculata_contig132:6170..6295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig132 6171..6295 -
1622929043.0728745-CDS-H-paniculata_contig132:7607..77091622929043.0728745-CDS-H-paniculata_contig132:7607..7709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig132 7608..7709 -
1691480710.6454875-CDS-H-paniculata_contig132:7607..77091691480710.6454875-CDS-H-paniculata_contig132:7607..7709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig132 7608..7709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig132.2001.1prot_H-paniculata_contig132.2001.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig132 3419..7709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig132.2001.1

>prot_H-paniculata_contig132.2001.1 ID=prot_H-paniculata_contig132.2001.1|Name=mRNA_H-paniculata_contig132.2001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MSVSPTGGIEGMSLVSGGSAGVVPFTFPVSMALSVGIQGLPSGQPYRGEI
YGSDITYYIATDPSAVTSTPTKPSISDLIPPPEGPAFSTTDECPTEVYLQ
TCNWYWWWSGCKDFFCSSNGYDT*
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mRNA from alignment at H-paniculata_contig132:2011..7766-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig132.2001.1 ID=mRNA_H-paniculata_contig132.2001.1|Name=mRNA_H-paniculata_contig132.2001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5756bp|location=Sequence derived from alignment at H-paniculata_contig132:2011..7766- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTGCACTAGCTTTAGACAGCACGAGGAGCTGGACGCCTCGGGTGCGCT
TCTTACCATGTCGGTCTCCCCCACCGGCGGGATCGAGGGCATGTCGCTCG
TGTCCGGCGGATCAGCGGGAGTCGTGCCGTTCACGTTTCCCGTCTCGATG
GCCCTCTCGGTACGGTGTATTGCTCTTGGATTGTGATCGTTCATTCGCTG
CTCGCCTTACTTTTCTAATTTTGCTGATGAGGGGTAAGTTCAGGCATACT
CTGATTTCCATTTGGCCTGCGTACTCAACCTATGTCACCATGAACATGAG
GCGCGTACAAGAAATCAGCAGTATTGTATTGTCTGTATACTGCGGGGAGG
GTAAAGGCGGGTTGGTTGACTGGTGAATGATGAACGGGAGTTTTTAATTG
GTTTTAGACGATGGGGAGTATGTGTTGACGTTGCAGGCCATGTCACGTGC
ACCTGCAGTACGCACGCGAGTGCCATTACCCTTTTAGTATGCTCCCTGGG
GTAAACGTGGTAGTAAGGGTAGTGACAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTCCACGCGCTGTTCACGTTCCAATTGGTTTGAAAAGTCC
TGATATGTGTCCGTAAGCCTCGTTGTCGTCCATGTTTTTCTTTCGGCGGA
ACTGTTCATCTGTTATTTGTTGCGAACTTTACGCCGCATTAGCGTAGTCA
ACGGATGGCTGACGGACACGGTTGCCGCATGATACTTATGCACATGCTAG
GGAGAGCACTGTTGGCGGGAAATTTGTTGCAATGCGCTAAAAACCAAACA
TTACTGTGTGTACCTTGTCGTCGTTATTCAAGTGATCATTTCGCGGTGCT
CACTTGCTAGGCTACGCCGTAGCGTGTGTCGGTGTAGCCGAGGGCGTTCG
TGTGATCGGGGGATGATACATTTCTTTTCCTCTCTCCTTTCGACCTTCGT
GAGATATGCAGGTCAAAGTATGGATGCTGCGGTGCGCATGCCCCCCCCCC
GCCCACCCTTCTTCCCTCCTAGGGCGTGTGTAGATGTCATCTTATAATTG
AGGCTTGACATGTAAAGCTACCGCGCGACTATCTATAAGTTACTCATGTG
TTGTGAATGCATGGTACCATTCACAGTCTATGCGCGGTGTTGCTTCGCTA
GCGTCGCCTCGCACGAAAATATGTTCAACCTTTGCTGTTGTTATTGTTAG
TTGTTGTTATTGTTAGTTATTGTTATTGTTATTGTTATTGTTGTTGTCTG
TGTTTGAGTTTTACTTTTGGACTCCCCCGAGGGTCCAACCAAAACATTCA
CGCTCATCACGCTTTTTTGTCTTGTGGCGATTGATTCTTAAACTGATTTT
GTTGGAGACAACCATCCCCAACACTTCCTCTGACTGTCGCCCGTCGGAAG
TAGACGCTGAAGTTCTCCAAATAATCTTGTTATGCTATATACGGTTTTGT
TCTCCTGCTCGAAAATATCAGGTGGGTATTCAGGGGCTACCGTCTGGCCA
GCCGTACAGAGGAGAGATATATGGTTCGGACATTACCTACTACATCGCCA
CCGACCCGAGTGCCGTCACTTCCACGCCCACCAAGCCGAGCATCAGGTCC
GTTCTTCGACTCTGTGGCGACTGGCACTTACTGCGTTTTTAGATCTGTCG
GCCAAGCTCTAGGGCGCCTACCGTCGCGAATAGAGATATCTTGCTCCTCT
CTTTCCACTCGAGGACAACATGCTTCCACTGAGGTCATGTGGGGTGAAAG
GGGGCAATGGCGTTTGAAGAAGGTCTGTGTACTTTCGTTTCGGAAGTCAA
TTCGTGTGCGATCGCGTCGCGAAATTTGCCGAGGTCGATTGAGCTGCCAT
CAATATGCCCTAACGTTGCTTTTGCATCTTCGCCTCTGAACTCGGATAGG
CCTCTGCTTGTTTTTGGAGAACTTTGGTAGGTGGGTTTCGCATTCACCTC
AAGTGCCTGCTGGAGGTTGTGTACGATACGAGCTCCGCGAACGCGTAGAG
CGATTACCAGTATATTCCGACTAGGAGAATCAAATGCTATTGGTTTTCTG
AAACCCGTCAAGTCGCTAAGACATCATAAGTACCCTCCCCCCCCCTCATT
GATTTTATTTTGTTGATAAGTGTATGCTACTGCAGATTAAAGTGGACTGC
ATAACCTCAACATAGGAGTTATTATATGAGGTTTAGAGTTATAGGTTAAC
TTCCCCTTCCCCCTCCCTTTCCTATATATCTGCCTCATCGGGTGTCACAT
AGGCGTACACCATACGTTACCATCCTGAATGCGCTCTTTCCCTCCCGTAC
GCCCCCCAACAACCTCTTGGTGATGTGTTATTTGTCCTGGACGCGTGACG
TACATGAACAAATTCTTCAGCGACTTGATACCTCCACCCGAGGGACCCGC
TTTCAGTACCACAGACGAGTGCCCGACGGAGGTCTACTTGCAAACGTGAG
TGTGTCTTGTATCCGCCAATTTTCCATTTTAGTGTAAGTTAGTGCTAGTG
GATACGTATGCTGCTTTGAAACACGAGCTGCGAATCCCTAAACATGACGG
GTGCAGACGGTAATTCTGTAGAAATTTGACTTCGCTCCGTTGGTATGTCA
TGAGGACGGTGCAAAGAAAACCAAAAGCTGTGGATTATTTCTTAGCGAGT
TCTGGTAGCACTTTCTGACTACTACGAAGAACTGTTTTCTACAGTCACAA
CATATCTGGGTACTGCTATACTAACACGCGTAGTGACATTCTCCTTTTGT
TGAAGTATACAGTTGTACTGTTACACATATCCCGTGTTGACTGCACTCTC
CCGCTTGCTGGACCTGTGGAGGTCCCGACATTCGGCCTTGTGTAGGGTGA
GCTTTGTGAGATGGGGGTCACCTACTCGGATTGTGAGCGTTAGTGTGGAT
GAGGAGGAGACGTGGTAAGCAAGAGACGAACGAGCACTCGTTCACGTGCT
GTGCTTTCGGTCGAGCGGACTCCAATCTCTAGTCCCTAGCTAGCCTCAGT
GCTGTTTGTGCCTTTGTTTCACCCCCTTTCTCTTTTTCATTAACAGTGTG
CGCATTGTTTGCCAGGGGCAGTAACAGGCTGGGCCCAACAAGACAGGCAA
AAACAGTGGATGGGACATTCTCACGTCGCCGATGATAGTTTTGACCTGAG
CTTTTGACGAGATCGTTACATCGTGAATACCATGATTTTCATGGCTGTAC
GTTTTTTTGTTGCGTTCTTTGTTTCGATTTTAACGACGTTTTCATGATTT
TCTGGTTTAGGAATCTATCCACATCTTACGGAAAAATAAATCGGATGCAC
CATCCATGGATACCGTTAATTGTAGGATAAGCTGACCTGAAGAATTCAGG
TAAAAATAAAATCTGCGTGCGAATTGTTCGTTGAAGATGTGTCTGGGCAA
CTCGATCTAAAACAAAGCACGACGTCTGAGATAATCCGCCCAATATCCAC
AGAATGGGAAGTGATGTAGAAAATAGATCACTCCCAACAGGAATGCCTAG
GTATGCTGATGTGCTCATCTCCTCAAAGTTTCATGTCAACTCTCCCCAAT
TATATTGCGAATGACCCGTTGAAGGTACAAGCGGTAACGACGTCTCATTT
CCATATATTTTTGCGGGTGTTTTCCTCCCATTGTTTCGGCTATAATTATG
GAACGGCGATGGGTTGGGAGTCGAAAGCATCATGCTTTTCACCGTAGTGT
CAGTAACACGCACTCAAATGTTCAGGACAATCGGACAAGAACCCAATTAT
GTTCACATTTGCACCAAATCACCTTCTGCTTCATATAATGGTAGACGCTA
ACAGGTGGGTACATGGTGATATAAAGGGAAATGTTCGAATTACCCCGATG
TCCGATCTGATCGCGCGGCGCACCCCGGGGTGCTTACACGCTTACGGGAA
GCCTCATAATTCATTTACAGGACGCCTTGGTGTGTGATAGTTGCTACTGC
TGTTGGCCTTTCTCGCCGGACCCTGCTCATAACATGATATGGCCATCATG
TCTTGTTTCACCCCATGTGCAGTACCTGTTTAACAAGAACTGTTCTCATG
TATCACAGGATTTCGAATGTTTTGTCCCCTCCCACCCACGCGTTGCCACC
TTGGTTGTTTTATAGTCAAGTGCTTCTTCAAGTCCGAAACATTCCGGGAA
AGCTCAGTTACTATTTGCACCTATTCTTGTGTTGACCCTTTGCCCAATTC
TCCCCCCGCGCTGTGCAGACACCCCCCCCAACGCACCGAACCTCTCAGAT
AACACTAACCATGGAACGAATCAAACAGGTGCAATTGGTACTGGTGGTGG
TCAGGCTGCAAGGATTTCTTCTGCAGTAGCAACGGCTACGATACATAATC
CAGCGATGACTAAGACGATAGCGATAGCACCGAAAACGGTGGCAAGCCAA
TGGTGGAGGAACAAGAAAGCTGTCACTAGAGTTGGGTCGCCTCTGTTAGT
GTCTGTTAAAAAGCACCGGCTGCTTTGCCTTTGTCGTCTGCGGTCCTATA
ATCACCCCGATAATCTAGATGAATGTGGGATCGATACGTTGGGTTGTCGT
CATTGGACTTGATGATGTTACAGGAGGCAACGGAGGTTGAGTAATGGTAG
ATCGTACACGACAAGGGAAGATCAAACCCGGGATCGTAGGTACGTGTAAG
AATTAGCTTGTTCAGACTGAAATTAATAGATATATATATATTCTTATGTT
AGTAGATGTGCCAACATCATTATCGTTAAACATGGCGCCTGCGAGACGGT
TGGGCAGGTGCCGGTATACCTACCTGGCTCCGGCATCGTTGAATAGTCCA
AGGATTATCCATTTACGATATCATCCAGACGGGTCGATTCACTTGATCCT
GTAGACCTCAAAACGACTTGAAGAATTCATGAATTATATCTTTTTTACCG
TGTTGGAGGAGTATCCGCTGTCGTAGTCGATGACACTCGTGATTAAGTCG
AGAGGAAATTTTATGGCGACAGTTTTAAGGAGTGAGCTGCGTGTAGGCTG
CCCGTGGGTATAGACCTCGGTTGGTACAAATCTACATAGGGGGTAGAGTG
TTTATGAAGCGAGATTCAGATAGTTCAATGAGAACACGGCGTGGCAAGGA
GGTACAGGTTACTTCGTTTTTGTTGTATGATGTATTAAGTCTTTTTTTTA
GGGAGCTAAGAAAGATATGCGTGTGGGTTACAGATGGAGCTCTAGTATTG
TAAACACGATTCCGGTGTCCTGACGCTGGTCTATAGAGCAAGTTGTGTGA
TGCCTGTAATGCCTCGTTTCATGTCGTTATAATCGTGCACTGGTGTTGGC
GTTGTATTCTGATGCGTTGTTCGCGTTCCCAGACATTAATCGCGGGATTA
GCTCGCTGTAGCGTTTCTGCAGTGTGTTGAACTTTCGTCATTTTTGTAGT
TGATACCACCAGTCAGTTGGTCCGTAGTAACATCAGCAGTCGAGCTCACC
CACCTAGCCTTCCGATAGTAAGACAGAAGTCCACATGCTCAAGGGACGAT
TTTTATAGGCCGGTGAAATGCTTGTACATAGCTTGAGGTCGGACATGCCT
TTAAAATGGGACATGGAGGGTTATCTAGTCAAGTATAATGAGATTCTGCT
CTTATTCTGCACTGTGTATTGTGTTTTTCCCCCTACTATCACCATTCATT
ACTGTTGCACAGTAGAAGCGTATCTTTTCCCCTGAACTTTTGCCTCTGTG
TGTGTTGATACCAATGAGTCAGGTACTCTTTCCGGGGATCTGTATTTTTT
TCCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig132:2011..7766-

>mRNA_H-paniculata_contig132.2001.1 ID=mRNA_H-paniculata_contig132.2001.1|Name=mRNA_H-paniculata_contig132.2001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig132:2011..7766- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGTCTCCCCCACCGGCGGGATCGAGGGCATGTCGCTCGTGTCCGG
CGGATCAGCGGGAGTCGTGCCGTTCACGTTTCCCGTCTCGATGGCCCTCT
CGATGTCGGTCTCCCCCACCGGCGGGATCGAGGGCATGTCGCTCGTGTCC
GGCGGATCAGCGGGAGTCGTGCCGTTCACGTTTCCCGTCTCGATGGCCCT
CTCGGTGGGTATTCAGGGGCTACCGTCTGGCCAGCCGTACAGAGGAGAGA
TATATGGTTCGGACATTACCTACTACATCGCCACCGACCCGAGTGCCGTC
ACTTCCACGCCCACCAAGCCGAGCATCAGGTGGGTATTCAGGGGCTACCG
TCTGGCCAGCCGTACAGAGGAGAGATATATGGTTCGGACATTACCTACTA
CATCGCCACCGACCCGAGTGCCGTCACTTCCACGCCCACCAAGCCGAGCA
TCAGCGACTTGATACCTCCACCCGAGGGACCCGCTTTCAGTACCACAGAC
GAGTGCCCGACGGAGGTCTACTTGCAAACCGACTTGATACCTCCACCCGA
GGGACCCGCTTTCAGTACCACAGACGAGTGCCCGACGGAGGTCTACTTGC
AAACGTGCAATTGGTACTGGTGGTGGTCAGGCTGCAAGGATTTCTTCTGC
AGTAGCAACGGCTACGATACATAAGTGCAATTGGTACTGGTGGTGGTCAG
GCTGCAAGGATTTCTTCTGCAGTAGCAACGGCTACGATACATAA
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