mRNA_H-paniculata_contig13196.2000.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13196.2000.1
Unique NamemRNA_H-paniculata_contig13196.2000.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13196.2000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13196contigH-paniculata_contig13196:4742..5733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size475
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13196.2000.1prot_H-paniculata_contig13196.2000.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13196 4876..5635 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.5980682-UTR-H-paniculata_contig13196:4741..48751622929042.5980682-UTR-H-paniculata_contig13196:4741..4875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13196 4742..4875 -
1691480710.4109187-UTR-H-paniculata_contig13196:4741..48751691480710.4109187-UTR-H-paniculata_contig13196:4741..4875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13196 4742..4875 -
1622929042.651619-UTR-H-paniculata_contig13196:5635..57331622929042.651619-UTR-H-paniculata_contig13196:5635..5733Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13196 5636..5733 -
1691480710.4340553-UTR-H-paniculata_contig13196:5635..57331691480710.4340553-UTR-H-paniculata_contig13196:5635..5733Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13196 5636..5733 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.6187167-CDS-H-paniculata_contig13196:4875..51051622929042.6187167-CDS-H-paniculata_contig13196:4875..5105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13196 4876..5105 -
1691480710.4188662-CDS-H-paniculata_contig13196:4875..51051691480710.4188662-CDS-H-paniculata_contig13196:4875..5105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13196 4876..5105 -
1622929042.635348-CDS-H-paniculata_contig13196:5622..56351622929042.635348-CDS-H-paniculata_contig13196:5622..5635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13196 5623..5635 -
1691480710.4259722-CDS-H-paniculata_contig13196:5622..56351691480710.4259722-CDS-H-paniculata_contig13196:5622..5635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13196 5623..5635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13196.2000.1

>prot_H-paniculata_contig13196.2000.1 ID=prot_H-paniculata_contig13196.2000.1|Name=mRNA_H-paniculata_contig13196.2000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MLHHGHEGLPLKVRRSVSDEVVRATAMDFIRRRVGLPWEKSLVDLGAVIV
CGVLITLWSRFRVSRRAFVCSYLGHDTRRE*
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mRNA from alignment at H-paniculata_contig13196:4742..5733-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13196.2000.1 ID=mRNA_H-paniculata_contig13196.2000.1|Name=mRNA_H-paniculata_contig13196.2000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=992bp|location=Sequence derived from alignment at H-paniculata_contig13196:4742..5733- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGCTCTGTGCTCCGGATTCGCCTGCGAGAACGGCCTGATACCTATTGC
TGAGGCCTTCAGGGTGCGGTGTTCGAACGACGTGTGCACCAACGAAGAAT
GTTGCACCACGGTGAGCCCAGCTTTGGTGCAGGCGGGCAGTTGATCATGT
TGGACACCGCAACGTCTTTTTGCTCACTTTGATTCACCTTGAGCCAATGC
CCGCTGTTTCAGTGCTGAGAAGATGTCTGATCAAGGGAGGATAGGGTTTC
AAATGGCCGATTTTACTGCGGAAATGTAATACTTTTCAACTCGACGTTTC
CATTGGACACATCATTTCAAGTTCGAGGAGAAGTGTATTATGAGCTCGAC
ATTTTGAGGCAGAAATTCCTCTATTTATTGGTATAGCCAACAGTTGAAAT
ATTCGACGCGCACACAAACCTGCAACCCGATCATCGACTCTACCTTCACC
TTCAGCTTCCCCACTCTAGACGCGGTGAATATGGAACACCCTGCCAAGGC
ACTGGTTGAGCGATGGCACTCTGATGATGAAAATGCTGACAGTTTTTATG
GCCAAGTATTACGATGTGGGGACCCTTACCTGAACACGTTGTTTGTCCGT
TTCTCTATCTCCGCACTGACTCCCACAGGTCATGAAGGGTTACCCTTGAA
AGTAAGAAGGAGCGTTTCCGACGAAGTGGTTCGAGCAACGGCGATGGACT
TTATCAGGAGACGCGTGGGACTACCGTGGGAAAAGTCACTCGTGGATTTA
GGGGCCGTCATCGTGTGTGGGGTGCTCATCACTCTCTGGTCTCGATTCCG
TGTCTCGCGGAGAGCATTCGTGTGCAGCTATTTAGGTCATGATACACGAC
GCGAGTGAGGTGACGATTGACTTGCTTTGACAAGGACAGTGCAGGAACTG
CGTATAGTACGTCGCGTTTTTGAAACAAAATTATAGTTGTGGTGTTGTAT
CAACGTTAAATTGCACCGGAAACGGAAAATACTAGCGGAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig13196:4742..5733-

>mRNA_H-paniculata_contig13196.2000.1 ID=mRNA_H-paniculata_contig13196.2000.1|Name=mRNA_H-paniculata_contig13196.2000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig13196:4742..5733- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCACCACGATGTTGCACCACGGTCATGAAGGGTTACCCTTGAAAG
TAAGAAGGAGCGTTTCCGACGAAGTGGTTCGAGCAACGGCGATGGACTTT
ATCAGGAGACGCGTGGGACTACCGTGGGAAAAGTCACTCGTGGATTTAGG
GGCCGTCATCGTGTGTGGGGTGCTCATCACTCTCTGGTCTCGATTCCGTG
TCTCGCGGAGAGCATTCGTGTGCAGCTATTTAGGTCATGATACACGACGC
GAGTGAGTCATGAAGGGTTACCCTTGAAAGTAAGAAGGAGCGTTTCCGAC
GAAGTGGTTCGAGCAACGGCGATGGACTTTATCAGGAGACGCGTGGGACT
ACCGTGGGAAAAGTCACTCGTGGATTTAGGGGCCGTCATCGTGTGTGGGG
TGCTCATCACTCTCTGGTCTCGATTCCGTGTCTCGCGGAGAGCATTCGTG
TGCAGCTATTTAGGTCATGATACACGACGCGAGTGA
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