mRNA_H-paniculata_contig1318.1991.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1318.1991.1
Unique NamemRNA_H-paniculata_contig1318.1991.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1318.1991.1 vs. uniprot
Match: D7FKY9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKY9_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.380e-10
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 2 
Query:  284 QFRYLMVRMVPVAFVFGGGVELFMIKTGFYDVALRLESQRIVAEEVAVQERRARAEARRRAR 469
            +F  +M++ VP +FV G G+ELFM+ TGFYDVALR E++R    E   Q RRAR EARRRAR
Sbjct:    5 KFATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAEAEEEYQARRARIEARRRAR 66
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BLAST of mRNA_H-paniculata_contig1318.1991.1 vs. uniprot
Match: A0A6H5JT82_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT82_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.450e-8
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = -2 
Query:  737 RVGDFFLRHIWQSRKEQLAIGNRFDKNKAPSCRARVVNGLT 859
            R+G+ FL H+WQSRKE+LAIG+RF +N APS R RVVNGLT
Sbjct:  345 RLGETFLSHLWQSRKERLAIGDRFCRNNAPSSRGRVVNGLT 385
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BLAST of mRNA_H-paniculata_contig1318.1991.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 6.720e-7
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = -2 
Query:  737 RVGDFFLRHIWQSRKEQLAIGNRFDKNKAPSCRARVVNGLT 859
            R+G  FL H+WQSRKE+LAIG+R   N APS R RVVNGLT
Sbjct:  217 RLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLT 257
[Close]
BLAST of mRNA_H-paniculata_contig1318.1991.1 vs. uniprot
Match: A0A6H5KJX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 7.160e-7
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = -2 
Query:  737 RVGDFFLRHIWQSRKEQLAIGNRFDKNKAPSCRARVVNGLT 859
            R+G  FL H+WQSRKE+LA G+R   N APS R RVVNGLT
Sbjct:  124 RLGKTFLSHLWQSRKERLAFGDRSCGNNAPSSRGRVVNGLT 164
[Close]
BLAST of mRNA_H-paniculata_contig1318.1991.1 vs. uniprot
Match: A0A6H5JDR4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.050e-6
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = -2 
Query:  737 RVGDFFLRHIWQSRKEQLAIGNRFDKNKAPSCRARVVNGLT 859
            R+G  FL H+WQSRKE+LAIG+R   N APS R RV+NGLT
Sbjct:  434 RLGKIFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVINGLT 474
[Close]
BLAST of mRNA_H-paniculata_contig1318.1991.1 vs. uniprot
Match: A0A6H5JD24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD24_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.250e-6
Identity = 45/127 (35.43%), Postives = 60/127 (47.24%), Query Frame = -2 
Query:  494 RVGDFFLRHIWQSRKEQLAIGNRFDKNKAPSCRARVVNGLT-----NYDMQNMSMPLSL*NRKKGCFLHNQPKPDLRASWYPRTTSLPSVRQNTTRRLRTSCGRQIH*LHGTYDGSILLYRSE*GSG 859
            R+G  FL H+WQSRKE+LAIG+R   N APS R RVVNGLT       +   +S+     +R  G   H   +    A+    T+  P++ +  T  L     R +    G  D S   YR E   G
Sbjct:  474 RLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTLEYALLSVVFRAVSRGLGSDTHYDSRA-AEATGGSSTSVHPALGRTPTGALSDPLSRFLFHDDGRVDPSAHAYRPESARG 599
[Close]
BLAST of mRNA_H-paniculata_contig1318.1991.1 vs. uniprot
Match: A0A6H5JMW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.260e-6
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = -2 
Query:  737 RVGDFFLRHIWQSRKEQLAIGNRFDKNKAPSCRARVVNGLT 859
            R+G  FL H+WQSRKE+LAIG+R   N APS R RVVNGLT
Sbjct:  348 RLGKTFLSHLWQSRKERLAIGDRCCGNNAPSSRGRVVNGLT 388
[Close]
BLAST of mRNA_H-paniculata_contig1318.1991.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.440e-6
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = -2 
Query:  737 RVGDFFLRHIWQSRKEQLAIGNRFDKNKAPSCRARVVNGLT 859
            R+G  FL H+WQSRKE+LAIG+R   N APS R RVVNGLT
Sbjct:  401 RLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLT 441
[Close]
BLAST of mRNA_H-paniculata_contig1318.1991.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.440e-6
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = -2 
Query:  737 RVGDFFLRHIWQSRKEQLAIGNRFDKNKAPSCRARVVNGLT 859
            R+G  FL H+WQSRKE+LAIG+R   N APS R RVVNGLT
Sbjct:  452 RLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLT 492
[Close]
BLAST of mRNA_H-paniculata_contig1318.1991.1 vs. uniprot
Match: A0A6H5KRD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.460e-6
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = -2 
Query:  737 RVGDFFLRHIWQSRKEQLAIGNRFDKNKAPSCRARVVNGLT 859
            R+G  FL H+WQSRKE+LAIG+R   N APS R RVVNGLT
Sbjct:  469 RLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLT 509
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1318.1991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKY9_ECTSI4.380e-1058.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JT82_9PHAE1.450e-870.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCQ0_9PHAE6.720e-768.29Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJX4_9PHAE7.160e-765.85Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDR4_9PHAE1.050e-665.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JD24_9PHAE1.250e-635.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMW7_9PHAE1.260e-668.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LRL5_9PHAE1.440e-668.29Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KVX2_9PHAE1.440e-668.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRD0_9PHAE1.460e-668.29Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1318contigH-paniculata_contig1318:9163..12565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_002320.1
Exons3
Model size860
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1318.1991.1prot_H-paniculata_contig1318.1991.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1318 9440..12204 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.7937183-UTR-H-paniculata_contig1318:9162..94391622929041.7937183-UTR-H-paniculata_contig1318:9162..9439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1318 9163..9439 +
1691480710.0696528-UTR-H-paniculata_contig1318:9162..94391691480710.0696528-UTR-H-paniculata_contig1318:9162..9439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1318 9163..9439 +
1622929041.8664217-UTR-H-paniculata_contig1318:12204..125651622929041.8664217-UTR-H-paniculata_contig1318:12204..12565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1318 12205..12565 +
1691480710.1000555-UTR-H-paniculata_contig1318:12204..125651691480710.1000555-UTR-H-paniculata_contig1318:12204..12565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1318 12205..12565 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.8140156-CDS-H-paniculata_contig1318:9439..95261622929041.8140156-CDS-H-paniculata_contig1318:9439..9526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1318 9440..9526 +
1691480710.0782876-CDS-H-paniculata_contig1318:9439..95261691480710.0782876-CDS-H-paniculata_contig1318:9439..9526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1318 9440..9526 +
1622929041.8412416-CDS-H-paniculata_contig1318:11426..114921622929041.8412416-CDS-H-paniculata_contig1318:11426..11492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1318 11427..11492 +
1691480710.0858386-CDS-H-paniculata_contig1318:11426..114921691480710.0858386-CDS-H-paniculata_contig1318:11426..11492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1318 11427..11492 +
1622929041.8557463-CDS-H-paniculata_contig1318:12135..122041622929041.8557463-CDS-H-paniculata_contig1318:12135..12204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1318 12136..12204 +
1691480710.09292-CDS-H-paniculata_contig1318:12135..122041691480710.09292-CDS-H-paniculata_contig1318:12135..12204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1318 12136..12204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1318.1991.1

>prot_H-paniculata_contig1318.1991.1 ID=prot_H-paniculata_contig1318.1991.1|Name=mRNA_H-paniculata_contig1318.1991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MGQFRYLMVRMVPVAFVFGGGVELFMIKTGFYDVALRLESQRIVAEEVAV
QERRARAEARRRARRAVEDGTGA*
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mRNA from alignment at H-paniculata_contig1318:9163..12565+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1318.1991.1 ID=mRNA_H-paniculata_contig1318.1991.1|Name=mRNA_H-paniculata_contig1318.1991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3403bp|location=Sequence derived from alignment at H-paniculata_contig1318:9163..12565+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTATTTTGAACCCTTTAAAGCTACAAAACAGCCACATCGCAATACTGCC
GAACATAGAACTAGCTAGCTGTACAGGAAGTGCAGCAAGCACAATCCCGA
GCAATGCTGTACTGAGTAAGTACGTATTTCTTCCGTGATAGTTCGGGGAT
AAAAGCGGGCTCTTGCAACACATTTGGCTCTGGATCTCCAGAATACTAAC
GAACAAGGGGACAACTGCCGAGCGAAGCAGCTGTCATAGCGATCAGCGCG
GTTAGTTGCAAAATCACAGCAGGAGTAATGGGTCAATTCCGCTATCTTAT
GGTGCGGATGGTCCCGGTAGCCTTCGTCTTCGGAGGTGGTGTGGAACTCT
TCATGATTAAAACGGTGAGATAGCCTGAAAGAAGCAATAGAGCGCAGTCA
AGTATACTACTGTACAGTACAGCAGCTGTGCTGTGGTATCAGGTGTGTAG
TACAGTAGGGTTGCGTTGCTGACTGTAGCCCGACGGTTGCTAGACAGCAC
TGACCGCTCAACCGCACAGTCTCGGTGCCTGCAGACTGTAGATCTGTGCG
GTACGCCTTCCCAACTATATAGAGATTCAGCACCTACTGTATTTGCAGAC
CTGTGTCGCTCTTTGAGCAAGTACACATATGAAGTTGAACATGTCTGTAC
AACAAACAAGATAAAGAGCATGTGCAAGTTTCCATAGCTCGGACAAAGGG
TCTTCACCCGTCAATGAAGGATGTCGCGAGTTTTGGAACTATACCAGCAC
GAGAATACTTGGTGCCTTCCGAAACCCACGAATCGATAGCATGGATATCC
TGCACACCTTCGAGGATTTTTCGACTTTTGAGTACTAGCACACCTCGACA
GATATTTCTACTTTCGAGCATGAAGGGATGACGGTTCCGTTGCGTGTTAA
TTACTTGAAAATCAAACCTTCGTTCGACCTGTGCAAGTTTACCTCTGGTG
TTTCATCTACCCCTAGGAAGCGTTGCACGTGCTTGTGCGCACTGTTTGAT
TGGGGTGGTCCTGACCCTGACCATAACCCTAACGCATTGACCAATAGATC
GTACAACAGTTGAGGAGCAAGTAGAAGGTGGTGTACGAATACAGGAGTAC
TAAGTACAGTACCTGTAGATATCACCAAAGAAGGTATATTCACCACATGT
CGTATACCTTTTTGCCGTCTCTCGAAAATTGAATCCACAGCCGGGATTAC
CTCCGGTGGGCTGCCCCCGTCGATCAAACCAAGACCGATCCTGTCCAAAT
AAACGCACAGGAGAAACACGTCAACGCAACTCACCCCCCGTAGCCCCTAG
AGGAATATTCAGCCCCCACATGGTATCTTAAATCTGTATCTGCACACAAG
GTTTGCTTCGTCAATTCGCTTCATCCTTCGATATGTGGACAAAGTGGTCA
GTTGCATGTAGATTGCCACCACAGTCCCAAACACTACATGTACTGCCTTA
GTCCCTCGTACTGGCAAAGCAATGTCCATGATATGTACAGTATAGTAGTA
CTGGCTGTAGACAGTGTCTTTTTCCTTCGGCCGCGAGAGGTTAGCTCTTG
CGCACACACAGGGGAGGCGCTTCTCTACTTCCCCTCTCGGCGAGGCAGAC
CTGTTTCCCGCATCGGATGTCTTTTTGTGGATATGAATCTTCATAACACT
TGAGAATCACCTCGACTGACGTACCCGACCATAATGCTAACCTGAACGGA
GACGACGTGCTCGCGCACATTGAACGAGTAACGCGGTGTTTACTGTAGTC
GGCACTGAGTAAGTTGGCTCCTTGTATGTTCATTGTCGTGGTCCTGCTAC
AAACCTACTTAAGCAGCGGCAAACCGCTGTCTGTTTATTCGAGTATATCC
GAAAGATGCCAAAAATTTGCCGATTTTTTTCGAACGGCAATGATTCGACC
GGTATGATGACCAGCACACGGCGGAGCTCGGGTCTATCGGAAAGAGTCAT
GAAGGAACAAAAGCTCGAAACGTTGGGTAGTAGGCCAAGTAGGCAACGTA
TATATATATATATATATATATACATATTTCGGAGTGCACCGATTGTCGGG
TTCAAGGCACTGAATTGTTATTAGGAAAAATGCATAACGACAATTGCGCA
AAGTTACGGCGTTGTTCATTGTAGCCCTGGGTCCGCCCACTGTACTGTTT
TTACTGTCGTATGTGCGATCAGTAGTCAACCTGGCATAGTCGCATATAGA
AAGATACTTTCTCTCTTAGGCCCTCCTCTGTTTGCTTCGTCGGCTGTCAT
CGCGGAAACGGCAGGGCTTCTATGATGTAGCGCTAAGGCTGGAATCACAG
CGGATTGTGGCCGAAGAGGTGGCTGTGCAGGTGAAGTGACCGGAGTTGGT
CAAAACGCCCATCGCCCGGTAGCAAACATTGTCAGTTGAGCAGCATAAAC
GCCTCCTCGATTGATTATCGGCTGGGACGGATCGCGATCGCGCGTCTTGC
AAAGATGAGGTCCGTCCGCCGTCTCATATCACTGCGTCTTTTTTTGCGCA
GCCTTCTGCGAGGGCGAGGGCGATGCCGATGTCGATTTTCCAGAAGTTGT
TATAGCATTGTCTTCACTTCCAAACTAGAGGAATTGTTCCGTTTACCTCT
AGGGTGAGCTTCGCTGTTGTGAACTGTACATCTCATGTCGAAACAGTTTC
CATTTTCAATTCATGTCTTTTTTTCGTAAGCGTCACACGTGGCACGGAAC
ACTTTGACGAGATCTGAATTAGGTACACTATTGGCATACGTATTGTAGCC
ATTGCCCGGCTACTATTGTTTGGTATCAAATACTTGGGAAGTGCCTATTA
TTTATGCGCTAGGGTGCACGTTAAGTTGCTTGTCGGAAAAGCATTGCAGA
CTACCATTTTGCTTACACTTTACATGTGTATAGCACATGTATCATGTAAA
ATTCGTCTGACAGATATCTCCTCCTCACCCGTCCCTCTTGCTCCATCGTG
CCTCTCCCGACGGGGAACAAAAGGAGAGGAGGGCTAGGGCTGAGGCACGG
CGACGAGCCCGGCGGGCAGTCGAAGACGGGACGGGCGCCTGATCCTCATT
CTGAGCGATACAATAGGATCGATCCGTCGTATGTGCCATGTAATCAGTGT
ATCTGTCTCCCGCAACTCGTTCTGAGTCGGCGGGTTGTGTTTTGTCGGAC
TGAGGGCAGGCTCGTTGTTCTGGGGTACCAGGACGCCCGAAGGTCCGGTT
TTGGTTGGTTGTGTAAGAAACACCCTTTTTTACGGTTTCATAAGGACAGG
GGCATACTCATATTTTGCATATCGTAATTGGTGAGACCGTTGACTACTCG
TGCTCGGCAGGACGGAGCTTTATTTTTATCAAAGCGATTTCCGATGGCCA
ATTGCTCTTTCCTACTTTGCCAAATGTGGCGCAAAAAAAAATCACCTACC
CTA
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Coding sequence (CDS) from alignment at H-paniculata_contig1318:9163..12565+

>mRNA_H-paniculata_contig1318.1991.1 ID=mRNA_H-paniculata_contig1318.1991.1|Name=mRNA_H-paniculata_contig1318.1991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig1318:9163..12565+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCAATTCCGCTATCTTATGGTGCGGATGGTCCCGGTAGCCTTCGT
CTTCGGAGGTGGTGTGGAACTCTTCATGATTAAAACGATGGGTCAATTCC
GCTATCTTATGGTGCGGATGGTCCCGGTAGCCTTCGTCTTCGGAGGTGGT
GTGGAACTCTTCATGATTAAAACGGGCTTCTATGATGTAGCGCTAAGGCT
GGAATCACAGCGGATTGTGGCCGAAGAGGTGGCTGTGCAGGGCTTCTATG
ATGTAGCGCTAAGGCTGGAATCACAGCGGATTGTGGCCGAAGAGGTGGCT
GTGCAGGAGAGGAGGGCTAGGGCTGAGGCACGGCGACGAGCCCGGCGGGC
AGTCGAAGACGGGACGGGCGCCTGAGAGAGGAGGGCTAGGGCTGAGGCAC
GGCGACGAGCCCGGCGGGCAGTCGAAGACGGGACGGGCGCCTGA
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