mRNA_H-paniculata_contig13174.1988.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A8J5EUC0_ZINOF (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5EUC0_ZINOF) HSP 1 Score: 62.0 bits (149), Expect = 9.960e-9 Identity = 40/125 (32.00%), Postives = 68/125 (54.40%), Query Frame = 1
Query: 4 ARFMSAPTQQHLVEVKCILRYLRGYPNI----PITYCRRK-PKLMGYSDSSNT------RGALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKI 345
+R+MS PT HL K LRY++G ++ P T + L GY D + T + A+ A + + SR+KHI +R+ A+R+ + K++ + HV + +Q AD+LTK + ++ R +I
Sbjct: 811 SRYMSQPTSAHLTAAKRALRYVKGTMDLGLFFPATGDNKSFTNLEGYLDKAATPLMIDNQAAIAIAKDPTHFSRAKHIKVRYHALREAVKDKEIQLIHVPTKNQKADMLTKVLRKTLFIHHRDRI 935
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A061F8I1_THECC (Integrase catalytic domain-containing protein n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061F8I1_THECC) HSP 1 Score: 61.2 bits (147), Expect = 1.860e-8 Identity = 37/126 (29.37%), Postives = 65/126 (51.59%), Query Frame = 1
Query: 4 ARFMSAPTQQHLVEVKCILRYLRGYPNIPITYCRR-KPKLMGYSDSS-----------NTRGALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKI 345
+RFM P++ HL VK ILRY++G + + + KL G+ DS + + A+ A N R+KHI I+F A+R+ ++ ++ +++ + +QL D+ TK + LR K+
Sbjct: 925 SRFMHKPSEVHLCAVKRILRYVKGTLRFGLKFSKNGNQKLQGFCDSDWGGSLEDSKSISGKSAISMAKNPVDHGRTKHIRIKFHAIREAVKNGEVAVEYCPTKEQLVDIFTKGLSTDQFKFLRDKL 1050
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A8J5FA76_ZINOF (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FA76_ZINOF) HSP 1 Score: 59.7 bits (143), Expect = 5.960e-8 Identity = 39/135 (28.89%), Postives = 68/135 (50.37%), Query Frame = 1
Query: 4 ARFMSAPTQQHLVEVKCILRYLRGYPNIPITYCRRKPK-----LMGYSDSS----------------NTRGALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKI 345
+R+MS PT HL K LRY++G ++ + + L GYSDS + + A+ A + + SR+KHI +R+ A+R+ + K++ + HV + +Q AD+LTK + ++ R +I
Sbjct: 336 SRYMSQPTSAHLAAAKRALRYVKGTMDLGLFFPATGDNESFTNLEGYSDSDYAGAEDAEKAATPLMIDNQAAIAIAKDPTHFSRAKHIKVRYHALREAIKDKEIQLIHVPTENQKADMLTKVLRKTLFIHHRDRI 470
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A085MHH4_9BILA (Uncharacterized protein n=2 Tax=Trichuris suis TaxID=68888 RepID=A0A085MHH4_9BILA) HSP 1 Score: 53.1 bits (126), Expect = 6.370e-7 Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 151 GALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLR 336
GA N + R+KHIA+++ VR+ + L I+HVAS DQLAD++TK GR+ + +LR
Sbjct: 8 GAKKLVRNPEFHKRTKHIAVKYHFVREKFLNGDLDIEHVASMDQLADIMTKPLGRVRFRELR 69
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A2K3LSE2_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LSE2_TRIPR) HSP 1 Score: 54.3 bits (129), Expect = 9.420e-7 Identity = 44/138 (31.88%), Postives = 62/138 (44.93%), Query Frame = 1
Query: 13 MSAPTQQHLVEVKCILRYLRGYPNIPITYCRRKPKLMGY----------------SDSSNTRGALDSATNCNYS-----------SRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKI 345
M+ P + H VK ILRYL+G + + +P + GY D + GAL + N S SR+KH+ + VRD SKQLI+ HV +A+QLAD LTK + +R K+
Sbjct: 1 MANPLESHWKAVKRILRYLKGSLHHGLLL---QPAVAGYPLSLRAYSDADWATDQDDRHSVSGALPCSHYDNLSTVALAHNPILHSRTKHMELDIDFVRDKVISKQLIVQHVPAAEQLADPLTKPLSPCNFASIRHKL 135
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 1.040e-6 Identity = 25/63 (39.68%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 115 KLMGYSDSSNTRGALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTK 303
+L+ + ++TR AL +N +S+RS+HI++R+ A+R W S ++ +DHV S+ L+D+LTK
Sbjct: 801 QLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSDILTK 863
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 1.410e-6 Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1
Query: 127 YSDSSNTRGALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKILTFG 357
YSDSS G L A N +SSR+KHIA+RF +++ + + + + HV + LAD+ TKH R + + +I FG
Sbjct: 785 YSDSS---GTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSIIHQIKDFG 858
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 1.510e-6 Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 1
Query: 139 SNTRGALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKI 345
S++ GAL A+N +SSR+KHIA+RF +R+ T+ ++ + H SA LAD+ TKH + + + I
Sbjct: 224 SDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 292
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 1.900e-6 Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 1
Query: 139 SNTRGALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKI 345
S++ GAL A+N +SSR+KHIA+RF +R+ T+ ++ + H SA LAD+ TKH + + + I
Sbjct: 661 SDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A5N6NNG9_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NNG9_9ASTR) HSP 1 Score: 54.3 bits (129), Expect = 2.260e-6 Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 151 GALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKI 345
GA N Y SR KH+A+ + VR+ +L + H+ SADQLADVLTK GR + +LR+KI
Sbjct: 122 GATYLCANPVYHSRMKHVALDYHFVREKVVGGELQVQHIHSADQLADVLTKPLGRGPFQRLRAKI 186 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13174.1988.1 >prot_H-paniculata_contig13174.1988.1 ID=prot_H-paniculata_contig13174.1988.1|Name=mRNA_H-paniculata_contig13174.1988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp MSAPTQQHLVEVKCILRYLRGYPNIPITYCRRKPKLMGYSDSSNTRGALDback to top mRNA from alignment at H-paniculata_contig13174:1929..2514- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13174.1988.1 ID=mRNA_H-paniculata_contig13174.1988.1|Name=mRNA_H-paniculata_contig13174.1988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=586bp|location=Sequence derived from alignment at H-paniculata_contig13174:1929..2514- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13174:1929..2514- >mRNA_H-paniculata_contig13174.1988.1 ID=mRNA_H-paniculata_contig13174.1988.1|Name=mRNA_H-paniculata_contig13174.1988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig13174:1929..2514- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |