mRNA_H-paniculata_contig13174.1988.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13174.1988.1
Unique NamemRNA_H-paniculata_contig13174.1988.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A8J5EUC0_ZINOF (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5EUC0_ZINOF)

HSP 1 Score: 62.0 bits (149), Expect = 9.960e-9
Identity = 40/125 (32.00%), Postives = 68/125 (54.40%), Query Frame = 1
Query:    4 ARFMSAPTQQHLVEVKCILRYLRGYPNI----PITYCRRK-PKLMGYSDSSNT------RGALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKI 345
            +R+MS PT  HL   K  LRY++G  ++    P T   +    L GY D + T      + A+  A +  + SR+KHI +R+ A+R+  + K++ + HV + +Q AD+LTK   +  ++  R +I
Sbjct:  811 SRYMSQPTSAHLTAAKRALRYVKGTMDLGLFFPATGDNKSFTNLEGYLDKAATPLMIDNQAAIAIAKDPTHFSRAKHIKVRYHALREAVKDKEIQLIHVPTKNQKADMLTKVLRKTLFIHHRDRI 935          
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A061F8I1_THECC (Integrase catalytic domain-containing protein n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061F8I1_THECC)

HSP 1 Score: 61.2 bits (147), Expect = 1.860e-8
Identity = 37/126 (29.37%), Postives = 65/126 (51.59%), Query Frame = 1
Query:    4 ARFMSAPTQQHLVEVKCILRYLRGYPNIPITYCRR-KPKLMGYSDSS-----------NTRGALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKI 345
            +RFM  P++ HL  VK ILRY++G     + + +    KL G+ DS            + + A+  A N     R+KHI I+F A+R+  ++ ++ +++  + +QL D+ TK      +  LR K+
Sbjct:  925 SRFMHKPSEVHLCAVKRILRYVKGTLRFGLKFSKNGNQKLQGFCDSDWGGSLEDSKSISGKSAISMAKNPVDHGRTKHIRIKFHAIREAVKNGEVAVEYCPTKEQLVDIFTKGLSTDQFKFLRDKL 1050          
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A8J5FA76_ZINOF (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FA76_ZINOF)

HSP 1 Score: 59.7 bits (143), Expect = 5.960e-8
Identity = 39/135 (28.89%), Postives = 68/135 (50.37%), Query Frame = 1
Query:    4 ARFMSAPTQQHLVEVKCILRYLRGYPNIPITYCRRKPK-----LMGYSDSS----------------NTRGALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKI 345
            +R+MS PT  HL   K  LRY++G  ++ + +           L GYSDS                 + + A+  A +  + SR+KHI +R+ A+R+  + K++ + HV + +Q AD+LTK   +  ++  R +I
Sbjct:  336 SRYMSQPTSAHLAAAKRALRYVKGTMDLGLFFPATGDNESFTNLEGYSDSDYAGAEDAEKAATPLMIDNQAAIAIAKDPTHFSRAKHIKVRYHALREAIKDKEIQLIHVPTENQKADMLTKVLRKTLFIHHRDRI 470          
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A085MHH4_9BILA (Uncharacterized protein n=2 Tax=Trichuris suis TaxID=68888 RepID=A0A085MHH4_9BILA)

HSP 1 Score: 53.1 bits (126), Expect = 6.370e-7
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1
Query:  151 GALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLR 336
            GA     N  +  R+KHIA+++  VR+   +  L I+HVAS DQLAD++TK  GR+ + +LR
Sbjct:    8 GAKKLVRNPEFHKRTKHIAVKYHFVREKFLNGDLDIEHVASMDQLADIMTKPLGRVRFRELR 69          
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A2K3LSE2_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LSE2_TRIPR)

HSP 1 Score: 54.3 bits (129), Expect = 9.420e-7
Identity = 44/138 (31.88%), Postives = 62/138 (44.93%), Query Frame = 1
Query:   13 MSAPTQQHLVEVKCILRYLRGYPNIPITYCRRKPKLMGY----------------SDSSNTRGALDSATNCNYS-----------SRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKI 345
            M+ P + H   VK ILRYL+G  +  +     +P + GY                 D  +  GAL  +   N S           SR+KH+ +    VRD   SKQLI+ HV +A+QLAD LTK      +  +R K+
Sbjct:    1 MANPLESHWKAVKRILRYLKGSLHHGLLL---QPAVAGYPLSLRAYSDADWATDQDDRHSVSGALPCSHYDNLSTVALAHNPILHSRTKHMELDIDFVRDKVISKQLIVQHVPAAEQLADPLTKPLSPCNFASIRHKL 135          
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.040e-6
Identity = 25/63 (39.68%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  115 KLMGYSDSSNTRGALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTK 303
            +L+ +   ++TR AL   +N  +S+RS+HI++R+ A+R W  S ++ +DHV S+  L+D+LTK
Sbjct:  801 QLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSDILTK 863          
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.410e-6
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1
Query:  127 YSDSSNTRGALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKILTFG 357
            YSDSS   G L  A N  +SSR+KHIA+RF  +++  + + + + HV +   LAD+ TKH  R  +  +  +I  FG
Sbjct:  785 YSDSS---GTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSIIHQIKDFG 858          
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.510e-6
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 1
Query:  139 SNTRGALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKI 345
            S++ GAL  A+N  +SSR+KHIA+RF  +R+ T+  ++ + H  SA  LAD+ TKH  +  +  +   I
Sbjct:  224 SDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 292          
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.900e-6
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 1
Query:  139 SNTRGALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKI 345
            S++ GAL  A+N  +SSR+KHIA+RF  +R+ T+  ++ + H  SA  LAD+ TKH  +  +  +   I
Sbjct:  661 SDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729          
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Match: A0A5N6NNG9_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NNG9_9ASTR)

HSP 1 Score: 54.3 bits (129), Expect = 2.260e-6
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 1
Query:  151 GALDSATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCGRMTYVQLRSKI 345
            GA     N  Y SR KH+A+ +  VR+     +L + H+ SADQLADVLTK  GR  + +LR+KI
Sbjct:  122 GATYLCANPVYHSRMKHVALDYHFVREKVVGGELQVQHIHSADQLADVLTKPLGRGPFQRLRAKI 186          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13174.1988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J5EUC0_ZINOF9.960e-932.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A061F8I1_THECC1.860e-829.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5FA76_ZINOF5.960e-828.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A085MHH4_9BILA6.370e-743.55Uncharacterized protein n=2 Tax=Trichuris suis Tax... [more]
A0A2K3LSE2_TRIPR9.420e-731.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JV56_9PHAE1.040e-639.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K9R3_9PHAE1.410e-638.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KC04_9PHAE1.510e-639.13Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF46_9PHAE1.900e-639.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6NNG9_9ASTR2.260e-646.15Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13174contigH-paniculata_contig13174:1929..2514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13174.1988.1prot_H-paniculata_contig13174.1988.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13174 1929..2502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.428745-CDS-H-paniculata_contig13174:1928..21511622929041.428745-CDS-H-paniculata_contig13174:1928..2151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13174 1929..2151 -
1691480709.903268-CDS-H-paniculata_contig13174:1928..21511691480709.903268-CDS-H-paniculata_contig13174:1928..2151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13174 1929..2151 -
1622929041.4415302-CDS-H-paniculata_contig13174:2374..25021622929041.4415302-CDS-H-paniculata_contig13174:2374..2502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13174 2375..2502 -
1691480709.9133234-CDS-H-paniculata_contig13174:2374..25021691480709.9133234-CDS-H-paniculata_contig13174:2374..2502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13174 2375..2502 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.4602063-UTR-H-paniculata_contig13174:2502..25141622929041.4602063-UTR-H-paniculata_contig13174:2502..2514Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13174 2503..2514 -
1691480709.9328246-UTR-H-paniculata_contig13174:2502..25141691480709.9328246-UTR-H-paniculata_contig13174:2502..2514Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13174 2503..2514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13174.1988.1

>prot_H-paniculata_contig13174.1988.1 ID=prot_H-paniculata_contig13174.1988.1|Name=mRNA_H-paniculata_contig13174.1988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MSAPTQQHLVEVKCILRYLRGYPNIPITYCRRKPKLMGYSDSSNTRGALD
SATNCNYSSRSKHIAIRFAAVRDWTRSKQLIIDHVASADQLADVLTKHCG
RMTYVQLRSKILTFGK*
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mRNA from alignment at H-paniculata_contig13174:1929..2514-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13174.1988.1 ID=mRNA_H-paniculata_contig13174.1988.1|Name=mRNA_H-paniculata_contig13174.1988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=586bp|location=Sequence derived from alignment at H-paniculata_contig13174:1929..2514- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCACGTTTCATGAGTGCACCAACTCAACAGCACTTGGTCGAAGTGAA GTGCATTCTCCGCTATTTGCGAGGGTACCCCAATATTCCGATCACCTACT GTAGAAGAAAACCCAAATTGATGGGCTACTCGGATTCATCGTGTAGCATA CAATCTACAACAGGAACGATGTTCTTCTTCGCCAACGGACTGGTACACTT CTTGTCTCGACTTCAGAAGATCACAGCTACAAGCGCAACTGAGGCGGAAC TGAGGCGGAACTGAGGCGGAACTCATCGTACTGGCTTCATGCGCTAAATA GGGAATATACCTTGGAATGCACCGAGAGTTTGGCCTGCAACTCAGCAGCT GTGAGGTCCGCAGCAACACCAGGGGTGCTCTCGACTCCGCAACAAATTGC AACTACTCAAGCCGCAGCAAGCATATAGCCATTAGGTTCGCAGCGGTAAG AGACTGGACCAGGAGCAAGCAGCTTATCATCGACCATGTAGCAAGCGCTG ACCAGCTAGCCGATGTCCTTACCAAGCACTGCGGAAGAATGACATACGTT CAACTGCGCAGCAAAATTTTGACATTTGGAAAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13174:1929..2514-

>mRNA_H-paniculata_contig13174.1988.1 ID=mRNA_H-paniculata_contig13174.1988.1|Name=mRNA_H-paniculata_contig13174.1988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig13174:1929..2514- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGCACCAACTCAACAGCACTTGGTCGAAGTGAAGTGCATTCTCCG
CTATTTGCGAGGGTACCCCAATATTCCGATCACCTACTGTAGAAGAAAAC
CCAAATTGATGGGCTACTCGGATTCATCATGAGTGCACCAACTCAACAGC
ACTTGGTCGAAGTGAAGTGCATTCTCCGCTATTTGCGAGGGTACCCCAAT
ATTCCGATCACCTACTGTAGAAGAAAACCCAAATTGATGGGCTACTCGGA
TTCATCCAACACCAGGGGTGCTCTCGACTCCGCAACAAATTGCAACTACT
CAAGCCGCAGCAAGCATATAGCCATTAGGTTCGCAGCGGTAAGAGACTGG
ACCAGGAGCAAGCAGCTTATCATCGACCATGTAGCAAGCGCTGACCAGCT
AGCCGATGTCCTTACCAAGCACTGCGGAAGAATGACATACGTTCAACTGC
GCAGCAAAATTTTGACATTTGGAAAATGACAACACCAGGGGTGCTCTCGA
CTCCGCAACAAATTGCAACTACTCAAGCCGCAGCAAGCATATAGCCATTA
GGTTCGCAGCGGTAAGAGACTGGACCAGGAGCAAGCAGCTTATCATCGAC
CATGTAGCAAGCGCTGACCAGCTAGCCGATGTCCTTACCAAGCACTGCGG
AAGAATGACATACGTTCAACTGCGCAGCAAAATTTTGACATTTGGAAAAT
GA
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