mRNA_H-paniculata_contig13167.1980.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13167.1980.1
Unique NamemRNA_H-paniculata_contig13167.1980.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13167.1980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13167contigH-paniculata_contig13167:5701..6228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size530
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929040.2241747-UTR-H-paniculata_contig13167:5700..59041622929040.2241747-UTR-H-paniculata_contig13167:5700..5904Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13167 5701..5904 +
1691480709.4212453-UTR-H-paniculata_contig13167:5700..59041691480709.4212453-UTR-H-paniculata_contig13167:5700..5904Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13167 5701..5904 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929040.2447124-CDS-H-paniculata_contig13167:5904..62281622929040.2447124-CDS-H-paniculata_contig13167:5904..6228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13167 5905..6228 +
1691480709.4338934-CDS-H-paniculata_contig13167:5904..62281691480709.4338934-CDS-H-paniculata_contig13167:5904..6228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13167 5905..6228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13167.1980.1prot_H-paniculata_contig13167.1980.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13167 5905..6228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13167.1980.1

>prot_H-paniculata_contig13167.1980.1 ID=prot_H-paniculata_contig13167.1980.1|Name=mRNA_H-paniculata_contig13167.1980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MVGTFEDDVRGKGGRNSWSYGGNGPSRKSRENQLKKRWTGDRESHPWWMR
DSEGNIDPSKPAVHFVHDDEVHAASEGSASTPDNSIRDTIWKDDNGTSRR
SRVGKGED
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mRNA from alignment at H-paniculata_contig13167:5701..6228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13167.1980.1 ID=mRNA_H-paniculata_contig13167.1980.1|Name=mRNA_H-paniculata_contig13167.1980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=528bp|location=Sequence derived from alignment at H-paniculata_contig13167:5701..6228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGGGAATAGACAGTAGTGCGGTTCAGACAGTGGAGGAGGGGTGAGGGG
CAGAGGAGATGTACGGAAACGTGCGAGGAGGTACCTTATCCTTACCAGGT
TAAATGATAGCACCGAGCTGAAGAAGTGCCATCGAAGAAGCAATTGGCTG
GAAGATAGACAGATAGGCTGGACAGACAGTGTTGCAGTTTTTGACCTACT
CAAGATGGTAGGCACCTTTGAGGACGATGTACGCGGTAAGGGCGGGAGAA
ATAGCTGGTCGTATGGGGGCAACGGACCGTCGCGGAAGAGTAGGGAAAAT
CAGCTCAAGAAGCGCTGGACAGGTGACCGTGAAAGCCATCCCTGGTGGAT
GCGGGATTCAGAGGGAAATATTGATCCTTCAAAACCAGCTGTTCATTTTG
TGCATGATGATGAGGTGCACGCAGCAAGCGAAGGCAGCGCGAGCACACCA
GACAACAGTATAAGAGACACCATCTGGAAGGATGACAATGGCACTAGTCG
AAGGTCAAGGGTAGGTAAAGGGGAAGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig13167:5701..6228+

>mRNA_H-paniculata_contig13167.1980.1 ID=mRNA_H-paniculata_contig13167.1980.1|Name=mRNA_H-paniculata_contig13167.1980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig13167:5701..6228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGGCACCTTTGAGGACGATGTACGCGGTAAGGGCGGGAGAAATAG
CTGGTCGTATGGGGGCAACGGACCGTCGCGGAAGAGTAGGGAAAATCAGC
TCAAGAAGCGCTGGACAGGTGACCGTGAAAGCCATCCCTGGTGGATGCGG
GATTCAGAGGGAAATATTGATCCTTCAAAACCAGCTGTTCATTTTGTGCA
TGATGATGAGGTGCACGCAGCAAGCGAAGGCAGCGCGAGCACACCAGACA
ACAGTATAAGAGACACCATCTGGAAGGATGACAATGGCACTAGTCGAAGG
TCAAGGGTAGGTAAAGGGGAAGACATGGTAGGCACCTTTGAGGACGATGT
ACGCGGTAAGGGCGGGAGAAATAGCTGGTCGTATGGGGGCAACGGACCGT
CGCGGAAGAGTAGGGAAAATCAGCTCAAGAAGCGCTGGACAGGTGACCGT
GAAAGCCATCCCTGGTGGATGCGGGATTCAGAGGGAAATATTGATCCTTC
AAAACCAGCTGTTCATTTTGTGCATGATGATGAGGTGCACGCAGCAAGCG
AAGGCAGCGCGAGCACACCAGACAACAGTATAAGAGACACCATCTGGAAG
GATGACAATGGCACTAGTCGAAGGTCAAGGGTAGGTAAAGGGGAAGAC
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