mRNA_H-paniculata_contig13153.1972.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13153.1972.1
Unique NamemRNA_H-paniculata_contig13153.1972.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13153.1972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13153contigH-paniculata_contig13153:1132..1753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size186
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13153.1972.1prot_H-paniculata_contig13153.1972.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13153 1151..1753 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929039.5870686-UTR-H-paniculata_contig13153:1131..11501622929039.5870686-UTR-H-paniculata_contig13153:1131..1150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13153 1132..1150 +
1691480709.1649938-UTR-H-paniculata_contig13153:1131..11501691480709.1649938-UTR-H-paniculata_contig13153:1131..1150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13153 1132..1150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929039.6030035-CDS-H-paniculata_contig13153:1150..13151622929039.6030035-CDS-H-paniculata_contig13153:1150..1315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13153 1151..1315 +
1691480709.1786056-CDS-H-paniculata_contig13153:1150..13151691480709.1786056-CDS-H-paniculata_contig13153:1150..1315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13153 1151..1315 +
1622929039.6180134-CDS-H-paniculata_contig13153:1732..17531622929039.6180134-CDS-H-paniculata_contig13153:1732..1753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13153 1733..1753 +
1691480709.1876142-CDS-H-paniculata_contig13153:1732..17531691480709.1876142-CDS-H-paniculata_contig13153:1732..1753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13153 1733..1753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13153.1972.1

>prot_H-paniculata_contig13153.1972.1 ID=prot_H-paniculata_contig13153.1972.1|Name=mRNA_H-paniculata_contig13153.1972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MPRLLTRPAFFGREFVAFGARASAQGTRDGQPNFSVAFAPLVGARGAASE
VWFDEAVSDVKW
back to top

mRNA from alignment at H-paniculata_contig13153:1132..1753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13153.1972.1 ID=mRNA_H-paniculata_contig13153.1972.1|Name=mRNA_H-paniculata_contig13153.1972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=622bp|location=Sequence derived from alignment at H-paniculata_contig13153:1132..1753+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACGTCGTGCTAGACGGTATGCCGCGTCTCCTCACCCGTCCCGCCTTCT
TTGGCCGGGAGTTCGTAGCTTTTGGGGCGAGAGCGTCCGCGCAGGGCACT
CGCGACGGACAGCCAAACTTCTCCGTAGCTTTCGCACCTCTCGTGGGCGC
AAGGGGAGCGGCGTCTGAGGTCTGGTTTGATGAGGTGCGAGCAGTGTTGC
TGATTTGGTTTACATGGCCTGTTCGGACCGCGTCGTATAAACAGCGGGAA
TTAAATAGGAGTGGCAGAATTTCAAATTGAATCTTGCATTCATTTCGATA
TTCGAAAAAAAATGTTGGGTTTCAATTATTCACAGCATCGCAGCCACGCA
GGAGTTTTTTTATGAATGAGTAGATAGATACAGCAATGTGCTGTCGTTAC
AAAGGCTCGTGTGTTGGTGTCCTATATTTGTGCACGGGCGAAGAGTACCC
TGTAAAGCACAACGACCCTCTATAATAATTATGTGCGATTCCTCGAGTGT
TTGGTTGGAATGATGACATGATCTATTTCATGCCTTGGCGAAGGCAACCT
GTGGAGCTCTTGAATGTGTTGCATGTACAATGATGTTGATTGATTATGCA
GGCGGTATCTGACGTGAAATGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13153:1132..1753+

>mRNA_H-paniculata_contig13153.1972.1 ID=mRNA_H-paniculata_contig13153.1972.1|Name=mRNA_H-paniculata_contig13153.1972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig13153:1132..1753+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCGTCTCCTCACCCGTCCCGCCTTCTTTGGCCGGGAGTTCGTAGC
TTTTGGGGCGAGAGCGTCCGCGCAGGGCACTCGCGACGGACAGCCAAACT
TCTCCGTAGCTTTCGCACCTCTCGTGGGCGCAAGGGGAGCGGCGTCTGAG
GTCTGGTTTGATGAGATGCCGCGTCTCCTCACCCGTCCCGCCTTCTTTGG
CCGGGAGTTCGTAGCTTTTGGGGCGAGAGCGTCCGCGCAGGGCACTCGCG
ACGGACAGCCAAACTTCTCCGTAGCTTTCGCACCTCTCGTGGGCGCAAGG
GGAGCGGCGTCTGAGGTCTGGTTTGATGAGGCGGTATCTGACGTGAAATG
GGCGGTATCTGACGTGAAATGG
back to top