mRNA_H-paniculata_contig1315.1970.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1315.1970.1
Unique NamemRNA_H-paniculata_contig1315.1970.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1315.1970.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 195 bits (496), Expect = 4.170e-63
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAICRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAI RLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_H-paniculata_contig1315.1970.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 195 bits (495), Expect = 5.930e-63
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAICRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAI RLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_H-paniculata_contig1315.1970.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 195 bits (496), Expect = 8.440e-63
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAICRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAI RLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   23 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_H-paniculata_contig1315.1970.1 vs. uniprot
Match: B7FX68_PHATC (Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FX68_PHATC)

HSP 1 Score: 194 bits (493), Expect = 1.200e-62
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAICRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAI RLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 103
[Close]
BLAST of mRNA_H-paniculata_contig1315.1970.1 vs. uniprot
Match: C1MUM2_MICPC (Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1MUM2_MICPC)

HSP 1 Score: 194 bits (493), Expect = 1.200e-62
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAICRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAI RLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_H-paniculata_contig1315.1970.1 vs. uniprot
Match: A0A067CU13_SAPPC (Histone H4 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CU13_SAPPC)

HSP 1 Score: 194 bits (493), Expect = 1.200e-62
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAICRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAI RLARRGGVKRISGLIYEETRGVLKVFLENVI+DSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIKDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_H-paniculata_contig1315.1970.1 vs. uniprot
Match: F0W2L9_9STRA (Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID=F0W2L9_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.200e-62
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAICRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAI RLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_H-paniculata_contig1315.1970.1 vs. uniprot
Match: A0A7S3RVL2_9SPIT (Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3RVL2_9SPIT)

HSP 1 Score: 194 bits (493), Expect = 1.240e-62
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAICRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAI RLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_H-paniculata_contig1315.1970.1 vs. uniprot
Match: H4_ARATH (Histone H4 n=272 Tax=Eukaryota TaxID=2759 RepID=H4_ARATH)

HSP 1 Score: 194 bits (492), Expect = 1.700e-62
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAICRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAI RLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_H-paniculata_contig1315.1970.1 vs. uniprot
Match: A0A0D2MLB1_9CHLO (Histone H4 n=6 Tax=Eukaryota TaxID=2759 RepID=A0A0D2MLB1_9CHLO)

HSP 1 Score: 194 bits (492), Expect = 1.700e-62
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAICRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAI RLARRGGVKRISGLIYEETRGVLKVFLENV+RD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1315.1970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024G0M5_9STRA4.170e-6399.03Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI... [more]
H4_SOLLC5.930e-6398.06Histone H4 n=13 Tax=cellular organisms TaxID=13156... [more]
A0A3L6V663_9STRA8.440e-6399.03Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
B7FX68_PHATC1.200e-6298.06Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 Rep... [more]
C1MUM2_MICPC1.200e-6298.06Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1M... [more]
A0A067CU13_SAPPC1.200e-6298.06Histone H4 n=5 Tax=Saprolegniaceae TaxID=4764 RepI... [more]
F0W2L9_9STRA1.200e-6298.06Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A7S3RVL2_9SPIT1.240e-6298.06Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 Re... [more]
H4_ARATH1.700e-6297.09Histone H4 n=272 Tax=Eukaryota TaxID=2759 RepID=H4... [more]
A0A0D2MLB1_9CHLO1.700e-6297.09Histone H4 n=6 Tax=Eukaryota TaxID=2759 RepID=A0A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1315contigH-paniculata_contig1315:5342..5653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.2
Seed ortholog evalue3.8e-48
Seed eggNOG ortholog157072.XP_008863623.1
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG3467@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size312
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929039.4890418-CDS-H-paniculata_contig1315:5341..56531622929039.4890418-CDS-H-paniculata_contig1315:5341..5653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1315 5342..5653 -
1691480709.1385634-CDS-H-paniculata_contig1315:5341..56531691480709.1385634-CDS-H-paniculata_contig1315:5341..5653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1315 5342..5653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1315.1970.1prot_H-paniculata_contig1315.1970.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1315 5342..5653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1315.1970.1

>prot_H-paniculata_contig1315.1970.1 ID=prot_H-paniculata_contig1315.1970.1|Name=mRNA_H-paniculata_contig1315.1970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAICRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at H-paniculata_contig1315:5342..5653-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1315.1970.1 ID=mRNA_H-paniculata_contig1315.1970.1|Name=mRNA_H-paniculata_contig1315.1970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig1315:5342..5653- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGGACGTGGAAAGGGTGGTAAGGGTCTGGGCAAGGGTGGCGCCAA
GCGCCACCGTAAGGTACTTCGTGACAACATCCAGGGCATCACCAAGCCTG
CAATCTGTCGTTTGGCTCGGCGTGGGGGTGTGAAGCGTATCTCTGGGCTC
ATCTACGAAGAGACTCGTGGTGTGCTAAAGGTTTTCCTGGAGAACGTTAT
TCGTGACTCGGTCACGTACACTGAGCACGCCCGCCGGAAGACCGTGACGG
CCATGGACGTGGTCTACGCTCTCAAGCGCCAAGGCCGCACGCTATACGGC
TTCGGTGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1315:5342..5653-

>mRNA_H-paniculata_contig1315.1970.1 ID=mRNA_H-paniculata_contig1315.1970.1|Name=mRNA_H-paniculata_contig1315.1970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig1315:5342..5653- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGGACGTGGAAAGGGTGGTAAGGGTCTGGGCAAGGGTGGCGCCAA
GCGCCACCGTAAGGTACTTCGTGACAACATCCAGGGCATCACCAAGCCTG
CAATCTGTCGTTTGGCTCGGCGTGGGGGTGTGAAGCGTATCTCTGGGCTC
ATCTACGAAGAGACTCGTGGTGTGCTAAAGGTTTTCCTGGAGAACGTTAT
TCGTGACTCGGTCACGTACACTGAGCACGCCCGCCGGAAGACCGTGACGG
CCATGGACGTGGTCTACGCTCTCAAGCGCCAAGGCCGCACGCTATACGGC
TTCGGTGGGTAGATGTCTGGACGTGGAAAGGGTGGTAAGGGTCTGGGCAA
GGGTGGCGCCAAGCGCCACCGTAAGGTACTTCGTGACAACATCCAGGGCA
TCACCAAGCCTGCAATCTGTCGTTTGGCTCGGCGTGGGGGTGTGAAGCGT
ATCTCTGGGCTCATCTACGAAGAGACTCGTGGTGTGCTAAAGGTTTTCCT
GGAGAACGTTATTCGTGACTCGGTCACGTACACTGAGCACGCCCGCCGGA
AGACCGTGACGGCCATGGACGTGGTCTACGCTCTCAAGCGCCAAGGCCGC
ACGCTATACGGCTTCGGTGGGTAG
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