mRNA_H-paniculata_contig13141.1964.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13141.1964.1
Unique NamemRNA_H-paniculata_contig13141.1964.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13141.1964.1 vs. uniprot
Match: A0A6H5KA78_9PHAE (TRASH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA78_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.610e-17
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRKAAGKEMSV 117
            +VFRFCRSKCHKNFTRKRNPRKSKWTKAFR+AAGKEMSV
Sbjct:   28 KVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSV 66
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BLAST of mRNA_H-paniculata_contig13141.1964.1 vs. uniprot
Match: A0A8C1J7C9_CYPCA (Ribosomal L24 domain containing 1 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1J7C9_CYPCA)

HSP 1 Score: 71.2 bits (173), Expect = 2.320e-15
Identity = 31/39 (79.49%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRKAAGKEMSV 117
            +VFRFCRSKCHKNF +KRNPRK++WTKAFRK+AGKE++V
Sbjct:   27 KVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAGKELTV 65
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BLAST of mRNA_H-paniculata_contig13141.1964.1 vs. uniprot
Match: A0A8J4UVI6_CLAMG (Putative ribosome biogenesis protein rlp24 (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4UVI6_CLAMG)

HSP 1 Score: 72.0 bits (175), Expect = 2.830e-15
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    4 VFRFCRSKCHKNFTRKRNPRKSKWTKAFRKAAGKEMSV 117
            VFRFCRSKCHKNF +KRNPRK++WTKAFRKAAGKE++V
Sbjct:    1 VFRFCRSKCHKNFKKKRNPRKTRWTKAFRKAAGKELTV 38
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BLAST of mRNA_H-paniculata_contig13141.1964.1 vs. uniprot
Match: A0A8C9VSB3_SCLFO (Ribosomal L24 domain containing 1 n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9VSB3_SCLFO)

HSP 1 Score: 70.9 bits (172), Expect = 3.560e-15
Identity = 31/39 (79.49%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRKAAGKEMSV 117
            +VFRFCRSKCHKNF +KRNPRK++WTKAFRKA GKE++V
Sbjct:   27 KVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKATGKELTV 65
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BLAST of mRNA_H-paniculata_contig13141.1964.1 vs. uniprot
Match: A0A4P9XM15_9FUNG (Ribosomal protein L24e-domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XM15_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 4.120e-15
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRKAAGKEMSV 117
            ++FRFCRSKCHKNF  KRNPRK +WTKAFRKAAGKEM++
Sbjct:   27 KIFRFCRSKCHKNFKMKRNPRKIRWTKAFRKAAGKEMTI 65
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BLAST of mRNA_H-paniculata_contig13141.1964.1 vs. uniprot
Match: A0A024UVG7_9STRA (TRASH domain-containing protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024UVG7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.240e-15
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRKAAGKEMSV 117
            +VFRFCRSKCH+NF RKRNPRK KWTKAFRKAAGKEM++
Sbjct:   27 KVFRFCRSKCHRNFNRKRNPRKVKWTKAFRKAAGKEMAL 65
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BLAST of mRNA_H-paniculata_contig13141.1964.1 vs. uniprot
Match: A0A067CCL1_SAPPC (TRASH domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CCL1_SAPPC)

HSP 1 Score: 72.8 bits (177), Expect = 5.240e-15
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRKAAGKEMSV 117
            +VFRFCRSKCH+NF RKRNPRK KWTKAFRKAAGKEM++
Sbjct:   27 KVFRFCRSKCHRNFNRKRNPRKVKWTKAFRKAAGKEMAL 65
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BLAST of mRNA_H-paniculata_contig13141.1964.1 vs. uniprot
Match: F0W4S5_9STRA (Ribosome biogenesis protein RLP24 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4S5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.350e-15
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRKAAGKEMSV 117
            +VFRFCRSKCHKNF RKRNPRK KWTK+FRKAAGKEM++
Sbjct:   27 KVFRFCRSKCHKNFNRKRNPRKVKWTKSFRKAAGKEMAL 65
[Close]
BLAST of mRNA_H-paniculata_contig13141.1964.1 vs. uniprot
Match: A0A8C8XK47_PANLE (TRASH domain-containing protein n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A8C8XK47_PANLE)

HSP 1 Score: 70.1 bits (170), Expect = 7.370e-15
Identity = 31/39 (79.49%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRKAAGKEMSV 117
            +VFRFC+SKCHKNF +KRNPRK +WTKAFRKAAGKE++V
Sbjct:   27 KVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTV 65
[Close]
BLAST of mRNA_H-paniculata_contig13141.1964.1 vs. uniprot
Match: A0A4W3GFS5_CALMI (TRASH domain-containing protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GFS5_CALMI)

HSP 1 Score: 70.1 bits (170), Expect = 7.370e-15
Identity = 31/39 (79.49%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRKAAGKEMSV 117
            +VFRFCRSKCHKNF +KRNPRK +WTKAFRK+AGKE++V
Sbjct:   27 KVFRFCRSKCHKNFKKKRNPRKVRWTKAFRKSAGKELTV 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13141.1964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA78_9PHAE1.610e-1794.87TRASH domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A8C1J7C9_CYPCA2.320e-1579.49Ribosomal L24 domain containing 1 n=1 Tax=Cyprinus... [more]
A0A8J4UVI6_CLAMG2.830e-1584.21Putative ribosome biogenesis protein rlp24 (Fragme... [more]
A0A8C9VSB3_SCLFO3.560e-1579.49Ribosomal L24 domain containing 1 n=1 Tax=Scleropa... [more]
A0A4P9XM15_9FUNG4.120e-1579.49Ribosomal protein L24e-domain-containing protein n... [more]
A0A024UVG7_9STRA5.240e-1584.62TRASH domain-containing protein n=6 Tax=Aphanomyce... [more]
A0A067CCL1_SAPPC5.240e-1584.62TRASH domain-containing protein n=4 Tax=Saprolegni... [more]
F0W4S5_9STRA5.350e-1584.62Ribosome biogenesis protein RLP24 putative n=1 Tax... [more]
A0A8C8XK47_PANLE7.370e-1579.49TRASH domain-containing protein n=2 Tax=Boreoeuthe... [more]
A0A4W3GFS5_CALMI7.370e-1579.49TRASH domain-containing protein n=1 Tax=Callorhinc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13141contigH-paniculata_contig13141:1089..1205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue1.8e-11
Seed eggNOG ortholog164328.Phyra52030
Preferred nameRSL24D1
KEGG koko:K02896
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000027,GO:0001671,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030234,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032781,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050790,GO:0051336,GO:0051345,GO:0060589,GO:0060590,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902626,GO:1990904
EggNOG free text desc.metallochaperone-like domain
EggNOG OGs3Q72X@4776,COG2075@1,KOG1723@2759
COG Functional cat.J
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929039.0775793-CDS-H-paniculata_contig13141:1088..12051622929039.0775793-CDS-H-paniculata_contig13141:1088..1205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13141 1089..1205 +
1691480708.9449897-CDS-H-paniculata_contig13141:1088..12051691480708.9449897-CDS-H-paniculata_contig13141:1088..1205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13141 1089..1205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13141.1964.1prot_H-paniculata_contig13141.1964.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13141 1089..1205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13141.1964.1

>prot_H-paniculata_contig13141.1964.1 ID=prot_H-paniculata_contig13141.1964.1|Name=mRNA_H-paniculata_contig13141.1964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
QVFRFCRSKCHKNFTRKRNPRKSKWTKAFRKAAGKEMSV
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mRNA from alignment at H-paniculata_contig13141:1089..1205+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13141.1964.1 ID=mRNA_H-paniculata_contig13141.1964.1|Name=mRNA_H-paniculata_contig13141.1964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at H-paniculata_contig13141:1089..1205+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTATTCAGGTTTTGCCGTTCTAAGTGTCACAAAAACTTCACACGAAA
GAGGAACCCTCGGAAATCTAAATGGACCAAGGCGTTTCGAAAAGCTGCCG
GGAAGGAGATGTCGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig13141:1089..1205+

>mRNA_H-paniculata_contig13141.1964.1 ID=mRNA_H-paniculata_contig13141.1964.1|Name=mRNA_H-paniculata_contig13141.1964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig13141:1089..1205+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTATTCAGGTTTTGCCGTTCTAAGTGTCACAAAAACTTCACACGAAA
GAGGAACCCTCGGAAATCTAAATGGACCAAGGCGTTTCGAAAAGCTGCCG
GGAAGGAGATGTCGGTGCAGGTATTCAGGTTTTGCCGTTCTAAGTGTCAC
AAAAACTTCACACGAAAGAGGAACCCTCGGAAATCTAAATGGACCAAGGC
GTTTCGAAAAGCTGCCGGGAAGGAGATGTCGGTG
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