mRNA_H-paniculata_contig1314.1961.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1314.1961.1
Unique NamemRNA_H-paniculata_contig1314.1961.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1314.1961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1314contigH-paniculata_contig1314:4421..8416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size484
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1314.1961.1prot_H-paniculata_contig1314.1961.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1314 4421..5276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929038.6415358-CDS-H-paniculata_contig1314:4420..45171622929038.6415358-CDS-H-paniculata_contig1314:4420..4517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1314 4421..4517 -
1691480708.700357-CDS-H-paniculata_contig1314:4420..45171691480708.700357-CDS-H-paniculata_contig1314:4420..4517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1314 4421..4517 -
1622929038.6561618-CDS-H-paniculata_contig1314:5070..52761622929038.6561618-CDS-H-paniculata_contig1314:5070..5276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1314 5071..5276 -
1691480708.7116456-CDS-H-paniculata_contig1314:5070..52761691480708.7116456-CDS-H-paniculata_contig1314:5070..5276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1314 5071..5276 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929038.6744037-UTR-H-paniculata_contig1314:5276..54031622929038.6744037-UTR-H-paniculata_contig1314:5276..5403Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1314 5277..5403 -
1691480708.7213192-UTR-H-paniculata_contig1314:5276..54031691480708.7213192-UTR-H-paniculata_contig1314:5276..5403Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1314 5277..5403 -
1622929038.6887028-UTR-H-paniculata_contig1314:8363..84161622929038.6887028-UTR-H-paniculata_contig1314:8363..8416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1314 8364..8416 -
1691480708.729152-UTR-H-paniculata_contig1314:8363..84161691480708.729152-UTR-H-paniculata_contig1314:8363..8416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1314 8364..8416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1314.1961.1

>prot_H-paniculata_contig1314.1961.1 ID=prot_H-paniculata_contig1314.1961.1|Name=mRNA_H-paniculata_contig1314.1961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MILQTFSKEWWMAMLHVRSTPRRAVFLEAGYTRSWEWGSGKRDIALTIAL
VCTLLFTAVFVGGPLTKLRLVHVKTSVCVSPASKLDQSRDRIRIITNYTM
G
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mRNA from alignment at H-paniculata_contig1314:4421..8416-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1314.1961.1 ID=mRNA_H-paniculata_contig1314.1961.1|Name=mRNA_H-paniculata_contig1314.1961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3996bp|location=Sequence derived from alignment at H-paniculata_contig1314:4421..8416- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCATACCGGCCGCAGTCGGACGTGCTGCAAAGCTCTGCTGAAGGAAAAT
CAGGCAAGAAGGTAGTAAAAAGAACTCAAAGTATCCAACTTGGGTGAATC
TGTCGTGATGTTTGACCCCGACAGTATCTACAGGTAGCCGAATGTTTGAA
ATCATTTTTCTTCTTACAGTACATGCAGACGTACCAACAGTGATGTTCCG
AGTGATAAGGAACGAGGTACGAGGGCAATCATGAACTAGTAGCCAATTAG
CGCAGATCCTCAATCCATAGATGATTGGGTTTAGACCTACCACATATATC
GCACAGGCGTTGCTGTAGCAACCGCGGACAGTATTCAAGGTATGTGTTCA
GCATGAAGTTGAACCAAGGGCGAATTCGCCTGCGTTGAACAAAATTGCAC
ACCTGCTATGACTTACTAGTCGCACTATAGTCTCGTTCCTAATTCCCTAG
AACGGAACCGACTATAGTCGACTCAGGCAACTAATTCTCAGTCAACAAAG
CAACTAAAGTGGAATCAGCCAAGACACTGTTCTATGGCAGTCATGTACCA
AGATGTAGAAGAGGAGAAGAATATTTATATAGTTTTGTAGGCCTTGTCCA
AACGTTCCCATGCTCTTTCGTCCTGATGCGACGACTGTCGCGAGAACTCA
TTTCGGCCAAAGATAGCCTATGTGCGCACTGTTCAACCAAGAGTAATTTC
CAACTTTACCCAAATCAAGAACCAAAAGTTCCACCGTGGTGTGCCTTGAC
AACATGTATAGCCGTTGATGTGAGATGAGAAATGCGGCGGAAGTGCGTTG
CCTCTAGGGCCATCTCTTATGGGGTCGGATTTTTCCAGTCGATTTTCTCT
ACTTTCCGATTTCTCGAAGGGTGCAAAAATCTTATCTTCAATATTCGATT
CGCGTTTTTTATGGGGTCGGATTTCCCGAAGGTGGTTTTTTATGAAAATT
TGCAGTCGTAGTGGTACAAGCGGCATAATTCAAAATTGAAACACACCCTC
CAACGTTGGGTCCTCGAGCACCACCCAAGACATCACGCTCGTGCCAACCT
CCAGCATACACTCGCATCACCATTTAAAGAGCACACGATCATGAGTGTAC
CGTCAACTGCGATACATCTTACGACTAATCCATGCGTGGAATGGGTGTGG
AGTGACAAGAAAGCTCAGGGGATCAAATCGGCTGTCAGCAAGGCACAGTG
AATGATACTGCAGAGTGTACCACTGTGGTACGCTTGTACTCGTGTGAAGC
AAAACAGTGGGATCATACCTCAGGCCGACAGGAACAAGGCCGCGGTTGAA
CTATACGATAAGATCGCGGTTCACAGCTTCCTCCGCTGGGTAGAGGAAAC
CCCCGGGCTAGCAGTCCCGCAAGTTCTATATTCGGCGGGAGTCACACACC
TTGGCTTGTCTGTATCCGCGTGCTTATGTATTGCTATAGGCTGTGACATT
CAAACGTTGGATGAAAAACATTGACACCTTCATATATTGGTACTCCAAGA
AATTTGATACGCAAGGGCAACTTTGATTTCTGGCAGAAATCGGGGAATGG
GACCGGCTGTACCTCTCGTCTCAGATGTCTCAACTCAGAGTTCCAAGAAA
TCCAACGGCATAACATGGGAAATCGATCTCTCGGAGTCGAAAAAATCGAA
AATCTGTATTTGACTGGAAAAATCCGACCCCAAAAGAGATGGCCTAAACA
GTTTAATGTTTGAATTGTTCACCTCATTTCAGAACAAAATAGGCGTTGAC
TTATGGATGTTTTTTACACGGTAAGACGATCTACGACATGTGAGAGGTAG
CGTAGCATGTGTCAAGGGTCATTATCAAACTTTTACAACTAAATTTCCAA
ATAAAAAGTCGACTTAGTCGATGAAGCTGACTAATTCCCGAAAGAGAAAC
CGACTATAAATATATTGGACTAATCTGACTAATTTCAAAACGTAAAATCA
ACTGTAGTCGACTAATCCAAAAAATTCCAAAACGTCAAACCGACTGTAGT
CCACTGAGTCGCTTAATTCCAAACTATAGTAGACGAAGCCGACTAATTCC
CAAACGTCGTACCGGCTCTAGGCGACTAAGCGGACTACTTCCCAAACATG
AAGCCGACTATAGTCGACTAAGCCGACAGTTTTCCAGACATGAAATCGAC
TATAGTTGACTAAAACGACTAATTTCCGAAACGAAACCGACTAATTTCCA
AACATGAAACCGGTTATAGTCGACTTAGCAGACTTATTCCCAAAACAGGA
AACCGACTAATTCTCGAAGGTGCTCATGACTAAGCAAATGAATCGACTAC
AACAAGAAGTCTGAGTATAACTCGTGGCATGTGTGCAAGGTTGCACATTT
CGACACTACCGCAGCAGTGGATAATAATATAGATTAACTGTTGTACAGTT
CAGTGTACAGTGTAGAGCTTTTGAAACGAGTCTGCGAACCATCCCGCACC
GCTAATGATGAGAAAGAGACGATCAGTCAACGAACAATGGGTGAGGTATG
TTTGGCTTTTGGACCCAACGCGAGTAGGACTTCAAAAGTACATATCTCTA
CCTACATCTGATGTCACATATGTCGATCGTTATAGTAATATTTTGTCCCA
CATCAGGGATAGGTTTCATCCCAATTTACAATTTACAAATGAAAAGCATA
CAGCTGTGAGGTATAACCAACAACGATTTTTTTAATTGTTATTATTGCGT
GCTGGAAATCGGGAAAATCTTAGTGATCTTAGACTCTCGATAGTATACTG
TCAACCCTGCAGCGCTCTAGTGCTAGATCGATGAGATAGAGTCACGGGCT
GTTCATCTGTATCATACCAGGAGAATGAATAAACAAGATGGTTATCCATG
GGGCATTATATATCAGATCACCCGTGGATCTGTGCGTACTCGTATGTTCA
GTCTACTTATATGGGGTTCGTAGCCACTATTTCAGATTGTGTAACATTCG
TACAAGGCATTATCTCGTCATTGGATGTCGCCTCATTCTGCTTGCCTCAC
GGTCGTTTTGCAGGCCTCGTGTGAGCGAAGTACTGCTGTGAGTTTGTGTA
CTCACTCTTTGTACGAGGCACCAGCGATACGTCTTTCCAGGCACTCATCG
CAAGCACACATTGTACAACTGCCTGTGCCAAGGAAACAGTATGATATTAC
AAACGTTTTCAAAGGAATGGTGGATGGCCATGCTACATGTTCGGAGTACG
CCGCGGAGAGCCGTGTTCCTGGAGGCTGGCTACACGCGTTCATGGGAGTG
GGGCAGCGGTAAACGCGATATTGCTCTGACTATAGCGCTCGTATGTACGC
TCTTGTTCACCGCAGTTTTCGTCGGAGGTCCTCTGACCAAGCTCAGGTGA
GCGGTATGCAGCAGCGACATAAGTGTGCACCGCTGCTTTCCATCGTCGTT
CTCCGTACTAAACATTGCATACATGCTGTAATTGGTGTTCCCGCAAAGCG
CACTTCGAGGTGTGGGTGGGATTGGTTATCAATTCAGCCCTCGCCGTCAA
TGACAGCGGCGGCAACATACGACAGCTTGCAGCAGTAGCAACAACAGCAG
CAGCTGAAGGTCGCGATCGCTGAGCAGCAATGAAGACTTCCAGCTGCTGC
TGCAAGGCTGCAGCCCCAGCTGTCACATCGGTGTCGTAGATCTACGTTGA
TTGTGTCAGCTACACAATTGTTGTGTGTGAGGTGCGATGGGTGCGTGTTG
CGACATGTACGGCGATTGGATATTATCGTGAGTGCTACCCTCGCCATGTT
TTCATGTAATCGTGGAGCAAACCCTCAACCCAAAATATGAAGATTCGGCA
CTTGACCTCTGGATTTTTTTAACGTTTATTATTCACCTGTTTAAGTCTAA
CCCACATCGACACCCCGCCGTCCACTCTGTATTCCCTGAACTAACCAAGG
CTGGTTCACGTCAAGACGTCCGTCTGCGTTTCTCCAGCATCAAAGCTCGA
CCAAAGTCGTGATAGGATCAGGATAATCACTAATTATACTATGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1314:4421..8416-

>mRNA_H-paniculata_contig1314.1961.1 ID=mRNA_H-paniculata_contig1314.1961.1|Name=mRNA_H-paniculata_contig1314.1961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig1314:4421..8416- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATATTACAAACGTTTTCAAAGGAATGGTGGATGGCCATGCTACATGT
TCGGAGTACGCCGCGGAGAGCCGTGTTCCTGGAGGCTGGCTACACGCGTT
CATGGGAGTGGGGCAGCGGTAAACGCGATATTGCTCTGACTATAGCGCTC
GTATGTACGCTCTTGTTCACCGCAGTTTTCGTCGGAGGTCCTCTGACCAA
GCTCAGATGATATTACAAACGTTTTCAAAGGAATGGTGGATGGCCATGCT
ACATGTTCGGAGTACGCCGCGGAGAGCCGTGTTCCTGGAGGCTGGCTACA
CGCGTTCATGGGAGTGGGGCAGCGGTAAACGCGATATTGCTCTGACTATA
GCGCTCGTATGTACGCTCTTGTTCACCGCAGTTTTCGTCGGAGGTCCTCT
GACCAAGCTCAGGCTGGTTCACGTCAAGACGTCCGTCTGCGTTTCTCCAG
CATCAAAGCTCGACCAAAGTCGTGATAGGATCAGGATAATCACTAATTAT
ACTATGGGAGCTGGTTCACGTCAAGACGTCCGTCTGCGTTTCTCCAGCAT
CAAAGCTCGACCAAAGTCGTGATAGGATCAGGATAATCACTAATTATACT
ATGGGA
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