mRNA_H-paniculata_contig13138.1959.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13138.1959.1
Unique NamemRNA_H-paniculata_contig13138.1959.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13138.1959.1 vs. uniprot
Match: D8LJH9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH9_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.240e-8
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = -1 
Query:  619 QMGILAMMVHEELSNQPYIINDLVGASYTFN 711
            QMGILAMM+HEE+SNQPYIINDL+ A YTFN
Sbjct:   76 QMGILAMMIHEEISNQPYIINDLLNAPYTFN 106
[Close]
BLAST of mRNA_H-paniculata_contig13138.1959.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 62.8 bits (151), Expect = 2.550e-8
Identity = 27/31 (87.10%), Postives = 31/31 (100.00%), Query Frame = -1 
Query:  619 QMGILAMMVHEELSNQPYIINDLVGASYTFN 711
            QMGILA+MVHEEL+N+PY+INDLVGASYTFN
Sbjct:  187 QMGILALMVHEELNNKPYVINDLVGASYTFN 217
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BLAST of mRNA_H-paniculata_contig13138.1959.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 62.4 bits (150), Expect = 3.230e-8
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = -1 
Query:  619 QMGILAMMVHEELSNQPYIINDLVGASYTFN 711
            QMGIL MMVHEELSNQPYI NDL+GASYTFN
Sbjct:  181 QMGILGMMVHEELSNQPYITNDLLGASYTFN 211
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BLAST of mRNA_H-paniculata_contig13138.1959.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.870e-8
Identity = 27/31 (87.10%), Postives = 31/31 (100.00%), Query Frame = -1 
Query:  619 QMGILAMMVHEELSNQPYIINDLVGASYTFN 711
            QMGILA+MVHEEL+N+PYIINDL+GASYTFN
Sbjct:  188 QMGILALMVHEELNNKPYIINDLLGASYTFN 218
[Close]
BLAST of mRNA_H-paniculata_contig13138.1959.1 vs. uniprot
Match: D7FWY5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY5_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 6.210e-8
Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = -1 
Query:  619 QMGILAMMVHEELSNQPYIINDLVGASYTFN 711
            QMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:  107 QMGILALMVHEELNNKPYVINDLLGAGYTFN 137
[Close]
BLAST of mRNA_H-paniculata_contig13138.1959.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 60.8 bits (146), Expect = 1.170e-7
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = -1 
Query:  619 QMGILAMMVHEELSNQPYIINDLVGASYTFN 711
            QMGILAMMVHE+LSNQPYIINDL GA+Y FN
Sbjct:  182 QMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212
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BLAST of mRNA_H-paniculata_contig13138.1959.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.480e-7
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = -1 
Query:  619 QMGILAMMVHEELSNQPYIINDLVGASYTFN 711
            QMGILAMM+HEE+SNQPYIINDL+ A YTFN
Sbjct:  176 QMGILAMMIHEEISNQPYIINDLLNAPYTFN 206
[Close]
BLAST of mRNA_H-paniculata_contig13138.1959.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 59.7 bits (143), Expect = 1.960e-7
Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = -1 
Query:  619 QMGILAMMVHEELSNQPYIINDLVGASYTFN 711
            QMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:  152 QMGILALMVHEELNNKPYVINDLLGASYNFN 182
[Close]
BLAST of mRNA_H-paniculata_contig13138.1959.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.450e-7
Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = -1 
Query:  619 QMGILAMMVHEELSNQPYIINDLVGASYTFN 711
            QMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:  191 QMGILALMVHEELNNKPYVINDLLGAGYTFN 221
[Close]
BLAST of mRNA_H-paniculata_contig13138.1959.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 59.7 bits (143), Expect = 3.160e-7
Identity = 25/31 (80.65%), Postives = 30/31 (96.77%), Query Frame = -1 
Query:  619 QMGILAMMVHEELSNQPYIINDLVGASYTFN 711
            QMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:  186 QMGILALMVHEELNNKPYVINDLLGASYNFN 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13138.1959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LJH9_ECTSI2.240e-883.87Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
FCPB_MACPY2.550e-887.10Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
FCPF_MACPY3.230e-890.32Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]
A0A6H5KCX6_9PHAE4.870e-887.10LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
D7FWY5_ECTSI6.210e-880.65Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
FCPE_MACPY1.170e-787.10Fucoxanthin-chlorophyll a-c binding protein E, chl... [more]
A0A6H5KBS3_9PHAE1.480e-783.87LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPD_MACPY1.960e-780.65Fucoxanthin-chlorophyll a-c binding protein D, chl... [more]
A0A6H5JHT6_9PHAE2.450e-780.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
FCPC_MACPY3.160e-780.65Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13138contigH-paniculata_contig13138:6128..6838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size713
Cds size105
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929038.5012562-UTR-H-paniculata_contig13138:6127..67331622929038.5012562-UTR-H-paniculata_contig13138:6127..6733Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13138 6128..6733 +
1691480708.629945-UTR-H-paniculata_contig13138:6127..67331691480708.629945-UTR-H-paniculata_contig13138:6127..6733Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13138 6128..6733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929038.52455-CDS-H-paniculata_contig13138:6733..68381622929038.52455-CDS-H-paniculata_contig13138:6733..6838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13138 6734..6838 +
1691480708.6391017-CDS-H-paniculata_contig13138:6733..68381691480708.6391017-CDS-H-paniculata_contig13138:6733..6838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13138 6734..6838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13138.1959.1prot_H-paniculata_contig13138.1959.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13138 6734..6838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13138.1959.1

>prot_H-paniculata_contig13138.1959.1 ID=prot_H-paniculata_contig13138.1959.1|Name=mRNA_H-paniculata_contig13138.1959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=35bp
MYASVERVRRADQVVDDVGLVRQLLVHHHSQDTHL
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mRNA from alignment at H-paniculata_contig13138:6128..6838+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13138.1959.1 ID=mRNA_H-paniculata_contig13138.1959.1|Name=mRNA_H-paniculata_contig13138.1959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=711bp|location=Sequence derived from alignment at H-paniculata_contig13138:6128..6838+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAGGGAGCAACCAACCTAGTAGCTTTCGTGGGAGCGACGACAAGACACT
GCAGTTCATCTGTAACTGCACGATAATATTTTCCCAAGAAACATCGTTCT
GGGGAATACAGCGCAAATTTCCCTGCTGTCCACAATGCACCGATAAAGCT
GGATGCACCTTGCGCATTCGTGTCACCTTCACAGCCAAGACGTCTTGAAT
TATACTGTCTAGTGAAAATTACGTCACTCTAGCACATGCAAAGAGTCTTC
GTTCCGACTACTGATTCTCCTTGCTCATGACGACAGTCGTTAGGCGGCTT
GACCAAACCATCACGGTACAATCAAACGACTGCTGTCCGTACTACCCTAG
CACCTGCAGAGCCCGGTAACATGGCACACGACTACGTAACGCCTCGAACG
TCCTAGCCCTCACCCCCCCCCTCCCCTCCCCGTGCCCATACCCAACACCA
CACGATACGACACCACATAAGCTCTATTCGAGAACGACTCATCTACGCTC
TCTTCTCTAGTCGAATTTCTATGCTTCTTCGACACACCCACCCACCCACA
AACGATCAACATGACCACATATTTACAACGTCCAAACTAAACCACCACCG
CTAATCATGTACGCTTCAGTTGAACGTGTACGACGCGCCGACCAGGTCGT
TGATGATGTAGGGCTGGTTCGACAACTCCTCGTGCACCATCATAGCCAGG
ATACCCATCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig13138:6128..6838+

>mRNA_H-paniculata_contig13138.1959.1 ID=mRNA_H-paniculata_contig13138.1959.1|Name=mRNA_H-paniculata_contig13138.1959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at H-paniculata_contig13138:6128..6838+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACGCTTCAGTTGAACGTGTACGACGCGCCGACCAGGTCGTTGATGA
TGTAGGGCTGGTTCGACAACTCCTCGTGCACCATCATAGCCAGGATACCC
ATCTGATGTACGCTTCAGTTGAACGTGTACGACGCGCCGACCAGGTCGTT
GATGATGTAGGGCTGGTTCGACAACTCCTCGTGCACCATCATAGCCAGGA
TACCCATCTG
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