mRNA_H-paniculata_contig1307.1922.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1307.1922.1
Unique NamemRNA_H-paniculata_contig1307.1922.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1307.1922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1307contigH-paniculata_contig1307:11547..14418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2040
Cds size1917
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1307.1922.1prot_H-paniculata_contig1307.1922.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1307 11547..14297 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929033.4059148-CDS-H-paniculata_contig1307:11546..129891622929033.4059148-CDS-H-paniculata_contig1307:11546..12989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1307 11547..12989 -
1691480706.610205-CDS-H-paniculata_contig1307:11546..129891691480706.610205-CDS-H-paniculata_contig1307:11546..12989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1307 11547..12989 -
1622929033.4207742-CDS-H-paniculata_contig1307:13351..135731622929033.4207742-CDS-H-paniculata_contig1307:13351..13573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1307 13352..13573 -
1691480706.620461-CDS-H-paniculata_contig1307:13351..135731691480706.620461-CDS-H-paniculata_contig1307:13351..13573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1307 13352..13573 -
1622929033.4353404-CDS-H-paniculata_contig1307:14045..142971622929033.4353404-CDS-H-paniculata_contig1307:14045..14297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1307 14046..14297 -
1691480706.6304786-CDS-H-paniculata_contig1307:14045..142971691480706.6304786-CDS-H-paniculata_contig1307:14045..14297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1307 14046..14297 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929033.4488397-UTR-H-paniculata_contig1307:14297..144181622929033.4488397-UTR-H-paniculata_contig1307:14297..14418Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1307 14298..14418 -
1691480706.6403-UTR-H-paniculata_contig1307:14297..144181691480706.6403-UTR-H-paniculata_contig1307:14297..14418Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1307 14298..14418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1307.1922.1

>prot_H-paniculata_contig1307.1922.1 ID=prot_H-paniculata_contig1307.1922.1|Name=mRNA_H-paniculata_contig1307.1922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=639bp
MSKSLAGALVPLASGKGSESTGSSALSGGLIPLAGRRNSSAAVAGGSTAT
FGRLIDSDGSDWDNDDEKNEGKAVTDSAFIEDNKSKRVSRRGRDTGRKKK
QGSNSRRETEADSSRSSKSRKEKTKRGDGENRRQKALMPDPVTDDDGDDD
YLFMGATAGAKGGRKSGTGMAEATALLLEGSDDSFSFATTSRTRKSKPLT
IDESLPRGTGLSGDISSTGSTSSMRTSETKTMNARTEDERGLYASTAFRH
DDSRSTTSHPGGVGHESGKPLNAFTGTSGKETSAFGRLSSGLAGPSTTIH
NSDEADALLRPTDPDALAGVATAASTTTPEIIPSQSGADARHDESRQSRF
TALSSSTVNVKDTRTIGWGQSTEAASKRRSPSPPSGARRARSESPQRSPR
RSLVSHGVTTSLSSDSAPAIGETAEQSKHERDNSVTEGVTDGTYASSRRS
EAASGNSGTIAEQTVGIGSVTEHSEHTSPSISSRGAVSATALTRGTMPRR
SALTAPNKPRRREGKVRGVSFDDDLGDLDALDVLPGSDDDAPTPSSAAAA
SRFSSSIDNVEKIPPTDIPSPSADDNTLSVVSTGKTFDRRTIAGEKRLDA
DGDAGQRPTSTRELATNLSFSTTSRSAQRSMPITAGLSP
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mRNA from alignment at H-paniculata_contig1307:11547..14418-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1307.1922.1 ID=mRNA_H-paniculata_contig1307.1922.1|Name=mRNA_H-paniculata_contig1307.1922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2872bp|location=Sequence derived from alignment at H-paniculata_contig1307:11547..14418- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAGTGATTCACTCTGTGACTGTTAAGTCATGTCTTCTCGTTACTCGGG
GCCAATCTAACCTATAATGTCTCCGCAGCATCCAAGATACAGATAAACCA
ACACCACCACAACAGCAGAACATGAGCAAGTCGTTGGCTGGTGCCCTCGT
GCCGCTTGCGAGCGGGAAGGGCTCGGAATCTACCGGGTCGAGTGCCCTCA
GTGGGGGCTTAATTCCATTGGCAGGTCGACGCAATTCATCTGCTGCCGTT
GCCGGAGGGTCAACGGCGACTTTCGGACGTCTTATCGATAGTGATGGGAG
CGATTGGGATAATGACGATGAAAAAAACGAAGGGAAGGCGGTCACAGACT
CTGCGTTTATTGAAGACAACAAAGTAAGAGGTTTGATGAATTGCCTGCCC
GTTGTGTATCCTCAGGATTGAAAAGGATCCACCTTGTTTTGGCGAATACC
AATTGACAGACGTAATCGCAAATTCAAAGCTCCTAATGTATGCTGCTACA
GGATCAAGCCCTTTACCTCACTATTATATGAAGCAACAAGTTAATTTCAA
GTATTGTCCAGTCCTGATTAACTGAGGCTTCAGCTATTTTAAGTTTGCAG
CCGACAATTGCTTACGCAACGCAATTGAAGGGTAGGCCGCCGAGAACACC
AGTCCGTCGTTGTTTATCTAAAGAATATGTACAACCCACCCAACGCACCC
CACCTTGGCGAGATACGTTTTGTTGTCCAAAAATGTGAGCCAATTCAACA
TCCCAACGGCCGCCAGTGCAAACACGATCCAGTCTCGATGACCCTGGCGA
GACTCTTCTTTTCGCATACTTTCGGAAATTTGCCATGTGGTGCAGAGCAA
GCGGGTCTCACGCCGTGGAAGAGATACGGGCCGGAAAAAGAAACAGGGCA
GCAACAGCAGGAGGGAAACAGAAGCGGACAGCTCACGCAGTAGTAAGTCA
AGGAAAGAAAAAACGAAGCGCGGTGATGGGGAGAACAGACGGCAGAAGGC
ACTGATGCCAGATCCAGTGACAGACGACGATGGAGACGACGACTACTTGT
TCATGGGAGCAACTGCGGTACGAAGTAACCTAACCAATGCACTCAGGATT
GGCAGTCTGTCACTGTATTGCAGCGTTTAATGTGGCGAGAGAGTTTAAAA
GCTCACGTTTATGTGCTGCCATGGAGCGTTGTTGGGCTATGGAATGAGAT
GTCTGTAATGAAGTCAGATGAACTAATCACGAAGATAAAATACAGCACAT
CGTGTTGCGGCAGGTGAAATCGTGCTCATGTAGAGCAGCAGCTGGGTGTG
TACCGGCCAAGAGGCTGGTTTGCCAATTATTCTTGATGCACCGTGTTGCA
CTCTGCACGCGGCATACCACGATCACGACCTCCAGCGACATTCCCTTTGT
TCACCTCCATGCTGTGTACTTACCTGAAGGGAGCCAAAGGCGGACGAAAG
AGTGGCACTGGAATGGCAGAGGCGACCGCCCTCCTATTGGAAGGATCTGA
TGACTCCTTCAGCTTTGCCACAACGAGCAGAACCAGAAAATCAAAACCGC
TGACCATAGATGAATCCCTACCAAGAGGCACTGGTCTCTCAGGAGACATT
TCATCTACTGGCAGCACCAGTAGCATGAGAACATCGGAAACTAAAACAAT
GAACGCAAGAACCGAAGACGAGAGAGGTTTGTACGCTTCGACCGCATTCA
GGCACGATGACTCCCGTTCTACTACGAGCCATCCCGGAGGTGTTGGACAC
GAGAGCGGAAAGCCATTGAACGCATTTACAGGCACGTCCGGAAAGGAGAC
TTCTGCGTTTGGAAGGCTCTCCTCCGGGCTAGCCGGTCCCAGCACAACCA
TCCATAATTCTGATGAGGCAGACGCGCTCCTGAGACCGACTGATCCCGAT
GCTCTCGCTGGCGTTGCCACTGCTGCCAGCACCACGACACCAGAAATTAT
ACCCTCCCAGAGTGGAGCAGACGCGCGACACGATGAATCACGTCAGAGTC
GTTTCACCGCGTTGTCCTCCTCCACTGTAAACGTAAAAGATACCAGGACC
ATCGGTTGGGGCCAATCAACAGAAGCAGCGTCGAAGCGCAGATCACCGTC
CCCGCCGTCCGGCGCCCGTAGGGCACGGTCAGAATCTCCTCAGAGAAGTC
CTCGCCGTAGTCTTGTCAGTCATGGTGTGACTACCTCACTCTCGAGTGAT
AGTGCTCCCGCTATCGGTGAGACAGCGGAACAATCAAAGCATGAACGTGA
TAACTCTGTAACAGAGGGCGTTACCGATGGTACTTACGCAAGTAGCAGAA
GAAGCGAGGCTGCTAGCGGCAATTCCGGCACCATTGCAGAACAAACAGTG
GGGATCGGAAGCGTGACTGAACATAGCGAACATACATCGCCCTCTATTAG
TAGCAGAGGAGCTGTCAGCGCAACAGCGTTGACTCGGGGCACGATGCCGC
GTCGTAGCGCGTTAACAGCACCGAATAAGCCTCGGAGACGTGAAGGCAAG
GTGCGTGGGGTAAGCTTCGACGACGACCTAGGTGATCTCGATGCATTGGA
TGTACTGCCCGGCAGCGATGACGATGCTCCTACCCCTTCATCTGCCGCCG
CTGCCTCTCGCTTTTCTTCCTCCATCGACAATGTAGAAAAGATACCACCG
ACTGACATTCCGAGTCCGTCGGCCGACGACAACACCCTCTCTGTAGTTTC
CACAGGCAAAACCTTTGACAGGCGAACTATTGCTGGAGAAAAACGGTTGG
ATGCCGATGGCGATGCTGGTCAGCGGCCAACTTCAACACGCGAGTTGGCG
ACGAACCTATCGTTTAGCACGACGAGTCGGAGTGCTCAGCGTTCGATGCC
TATCACTGCTGGACTCTCCCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1307:11547..14418-

>mRNA_H-paniculata_contig1307.1922.1 ID=mRNA_H-paniculata_contig1307.1922.1|Name=mRNA_H-paniculata_contig1307.1922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3834bp|location=Sequence derived from alignment at H-paniculata_contig1307:11547..14418- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCAAGTCGTTGGCTGGTGCCCTCGTGCCGCTTGCGAGCGGGAAGGG
CTCGGAATCTACCGGGTCGAGTGCCCTCAGTGGGGGCTTAATTCCATTGG
CAGGTCGACGCAATTCATCTGCTGCCGTTGCCGGAGGGTCAACGGCGACT
TTCGGACGTCTTATCGATAGTGATGGGAGCGATTGGGATAATGACGATGA
AAAAAACGAAGGGAAGGCGGTCACAGACTCTGCGTTTATTGAAGACAACA
AAATGAGCAAGTCGTTGGCTGGTGCCCTCGTGCCGCTTGCGAGCGGGAAG
GGCTCGGAATCTACCGGGTCGAGTGCCCTCAGTGGGGGCTTAATTCCATT
GGCAGGTCGACGCAATTCATCTGCTGCCGTTGCCGGAGGGTCAACGGCGA
CTTTCGGACGTCTTATCGATAGTGATGGGAGCGATTGGGATAATGACGAT
GAAAAAAACGAAGGGAAGGCGGTCACAGACTCTGCGTTTATTGAAGACAA
CAAAAGCAAGCGGGTCTCACGCCGTGGAAGAGATACGGGCCGGAAAAAGA
AACAGGGCAGCAACAGCAGGAGGGAAACAGAAGCGGACAGCTCACGCAGT
AGTAAGTCAAGGAAAGAAAAAACGAAGCGCGGTGATGGGGAGAACAGACG
GCAGAAGGCACTGATGCCAGATCCAGTGACAGACGACGATGGAGACGACG
ACTACTTGTTCATGGGAGCAACTGCGAGCAAGCGGGTCTCACGCCGTGGA
AGAGATACGGGCCGGAAAAAGAAACAGGGCAGCAACAGCAGGAGGGAAAC
AGAAGCGGACAGCTCACGCAGTAGTAAGTCAAGGAAAGAAAAAACGAAGC
GCGGTGATGGGGAGAACAGACGGCAGAAGGCACTGATGCCAGATCCAGTG
ACAGACGACGATGGAGACGACGACTACTTGTTCATGGGAGCAACTGCGGG
AGCCAAAGGCGGACGAAAGAGTGGCACTGGAATGGCAGAGGCGACCGCCC
TCCTATTGGAAGGATCTGATGACTCCTTCAGCTTTGCCACAACGAGCAGA
ACCAGAAAATCAAAACCGCTGACCATAGATGAATCCCTACCAAGAGGCAC
TGGTCTCTCAGGAGACATTTCATCTACTGGCAGCACCAGTAGCATGAGAA
CATCGGAAACTAAAACAATGAACGCAAGAACCGAAGACGAGAGAGGTTTG
TACGCTTCGACCGCATTCAGGCACGATGACTCCCGTTCTACTACGAGCCA
TCCCGGAGGTGTTGGACACGAGAGCGGAAAGCCATTGAACGCATTTACAG
GCACGTCCGGAAAGGAGACTTCTGCGTTTGGAAGGCTCTCCTCCGGGCTA
GCCGGTCCCAGCACAACCATCCATAATTCTGATGAGGCAGACGCGCTCCT
GAGACCGACTGATCCCGATGCTCTCGCTGGCGTTGCCACTGCTGCCAGCA
CCACGACACCAGAAATTATACCCTCCCAGAGTGGAGCAGACGCGCGACAC
GATGAATCACGTCAGAGTCGTTTCACCGCGTTGTCCTCCTCCACTGTAAA
CGTAAAAGATACCAGGACCATCGGTTGGGGCCAATCAACAGAAGCAGCGT
CGAAGCGCAGATCACCGTCCCCGCCGTCCGGCGCCCGTAGGGCACGGTCA
GAATCTCCTCAGAGAAGTCCTCGCCGTAGTCTTGTCAGTCATGGTGTGAC
TACCTCACTCTCGAGTGATAGTGCTCCCGCTATCGGTGAGACAGCGGAAC
AATCAAAGCATGAACGTGATAACTCTGTAACAGAGGGCGTTACCGATGGT
ACTTACGCAAGTAGCAGAAGAAGCGAGGCTGCTAGCGGCAATTCCGGCAC
CATTGCAGAACAAACAGTGGGGATCGGAAGCGTGACTGAACATAGCGAAC
ATACATCGCCCTCTATTAGTAGCAGAGGAGCTGTCAGCGCAACAGCGTTG
ACTCGGGGCACGATGCCGCGTCGTAGCGCGTTAACAGCACCGAATAAGCC
TCGGAGACGTGAAGGCAAGGTGCGTGGGGTAAGCTTCGACGACGACCTAG
GTGATCTCGATGCATTGGATGTACTGCCCGGCAGCGATGACGATGCTCCT
ACCCCTTCATCTGCCGCCGCTGCCTCTCGCTTTTCTTCCTCCATCGACAA
TGTAGAAAAGATACCACCGACTGACATTCCGAGTCCGTCGGCCGACGACA
ACACCCTCTCTGTAGTTTCCACAGGCAAAACCTTTGACAGGCGAACTATT
GCTGGAGAAAAACGGTTGGATGCCGATGGCGATGCTGGTCAGCGGCCAAC
TTCAACACGCGAGTTGGCGACGAACCTATCGTTTAGCACGACGAGTCGGA
GTGCTCAGCGTTCGATGCCTATCACTGCTGGACTCTCCCCGGGAGCCAAA
GGCGGACGAAAGAGTGGCACTGGAATGGCAGAGGCGACCGCCCTCCTATT
GGAAGGATCTGATGACTCCTTCAGCTTTGCCACAACGAGCAGAACCAGAA
AATCAAAACCGCTGACCATAGATGAATCCCTACCAAGAGGCACTGGTCTC
TCAGGAGACATTTCATCTACTGGCAGCACCAGTAGCATGAGAACATCGGA
AACTAAAACAATGAACGCAAGAACCGAAGACGAGAGAGGTTTGTACGCTT
CGACCGCATTCAGGCACGATGACTCCCGTTCTACTACGAGCCATCCCGGA
GGTGTTGGACACGAGAGCGGAAAGCCATTGAACGCATTTACAGGCACGTC
CGGAAAGGAGACTTCTGCGTTTGGAAGGCTCTCCTCCGGGCTAGCCGGTC
CCAGCACAACCATCCATAATTCTGATGAGGCAGACGCGCTCCTGAGACCG
ACTGATCCCGATGCTCTCGCTGGCGTTGCCACTGCTGCCAGCACCACGAC
ACCAGAAATTATACCCTCCCAGAGTGGAGCAGACGCGCGACACGATGAAT
CACGTCAGAGTCGTTTCACCGCGTTGTCCTCCTCCACTGTAAACGTAAAA
GATACCAGGACCATCGGTTGGGGCCAATCAACAGAAGCAGCGTCGAAGCG
CAGATCACCGTCCCCGCCGTCCGGCGCCCGTAGGGCACGGTCAGAATCTC
CTCAGAGAAGTCCTCGCCGTAGTCTTGTCAGTCATGGTGTGACTACCTCA
CTCTCGAGTGATAGTGCTCCCGCTATCGGTGAGACAGCGGAACAATCAAA
GCATGAACGTGATAACTCTGTAACAGAGGGCGTTACCGATGGTACTTACG
CAAGTAGCAGAAGAAGCGAGGCTGCTAGCGGCAATTCCGGCACCATTGCA
GAACAAACAGTGGGGATCGGAAGCGTGACTGAACATAGCGAACATACATC
GCCCTCTATTAGTAGCAGAGGAGCTGTCAGCGCAACAGCGTTGACTCGGG
GCACGATGCCGCGTCGTAGCGCGTTAACAGCACCGAATAAGCCTCGGAGA
CGTGAAGGCAAGGTGCGTGGGGTAAGCTTCGACGACGACCTAGGTGATCT
CGATGCATTGGATGTACTGCCCGGCAGCGATGACGATGCTCCTACCCCTT
CATCTGCCGCCGCTGCCTCTCGCTTTTCTTCCTCCATCGACAATGTAGAA
AAGATACCACCGACTGACATTCCGAGTCCGTCGGCCGACGACAACACCCT
CTCTGTAGTTTCCACAGGCAAAACCTTTGACAGGCGAACTATTGCTGGAG
AAAAACGGTTGGATGCCGATGGCGATGCTGGTCAGCGGCCAACTTCAACA
CGCGAGTTGGCGACGAACCTATCGTTTAGCACGACGAGTCGGAGTGCTCA
GCGTTCGATGCCTATCACTGCTGGACTCTCCCCG
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