mRNA_H-paniculata_contig13045.1908.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13045.1908.1
Unique NamemRNA_H-paniculata_contig13045.1908.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13045.1908.1 vs. uniprot
Match: A0A6H5JV32_9PHAE (Selenoprotein O n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV32_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 2.120e-76
Identity = 121/141 (85.82%), Postives = 134/141 (95.04%), Query Frame = 1 
Query:    1 RWEVQFKGAGLTPYSRTADGRKVLRSSIREFLCSEAMHFLGIPSTRAATLVTSDTKVRRDVYYTGNVIQEKASIVTRVAPTFLRFGSFEIFKSRDERSGREGPSYGNDALRKRMLDYAVRQFFPAAAAAGPEGSKARYLAM 423
            RWE+QFKGAGLTPYSR+ADGRKVLRSSIREFLCSEAMHFLGIP+TRAA LVTSDTKVRRDV+YTGNVIQE+ASIVTR+APTFLRFGSFEIFK RD R+GR+GPS GNDALR +ML+YA+ +FFP AAAAGP+GSKARYLAM
Sbjct:  220 RWEIQFKGAGLTPYSRSADGRKVLRSSIREFLCSEAMHFLGIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRLAPTFLRFGSFEIFKPRDPRTGRDGPSAGNDALRLQMLEYAIGRFFPGAAAAGPKGSKARYLAM 360
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BLAST of mRNA_H-paniculata_contig13045.1908.1 vs. uniprot
Match: A0A7S2V3H2_9STRA (Selenoprotein O n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3H2_9STRA)

HSP 1 Score: 203 bits (516), Expect = 4.240e-59
Identity = 102/141 (72.34%), Postives = 114/141 (80.85%), Query Frame = 1 
Query:    1 RWEVQFKGAGLTPYSRTADGRKVLRSSIREFLCSEAMHFLGIPSTRAATLVTSDTKVRRDVYYTGNVIQEKASIVTRVAPTFLRFGSFEIFKSRDERSGREGPSYGNDALRKRMLDYAVRQFFPAAAAAGPEGSKARYLAM 423
            RWE+QFKGAG TPYSR ADGRKVLRSSIREFLCSEA HFLGIP+TRA TLVTS+TKV RDVYYTGN I EKASIV R+AP+FLRFGSFEIFK  D  +GR+GPS GN AL  ++LD+A+ Q+FP  AAA    S   Y AM
Sbjct:  180 RWEIQFKGAGKTPYSRRADGRKVLRSSIREFLCSEANHFLGIPTTRAGTLVTSNTKVVRDVYYTGNPILEKASIVLRIAPSFLRFGSFEIFKPSDALTGRKGPSVGNTALLHQLLDFAIAQYFPEVAAAHAPASVESYAAM 320
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BLAST of mRNA_H-paniculata_contig13045.1908.1 vs. uniprot
Match: A0A836CN66_9STRA (Selenoprotein O n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN66_9STRA)

HSP 1 Score: 199 bits (505), Expect = 5.460e-58
Identity = 101/143 (70.63%), Postives = 117/143 (81.82%), Query Frame = 1 
Query:    1 RWEVQFKGAGLTPYSRTADGRKVLRSSIREFLCSEAMHFLGIPSTRAATLVTSDTKVRRDVYYTGNVIQEKASIVTRVAPTFLRFGSFEIFKSRDERSGREGPSYGNDALRKRMLDYAVRQFFP--AAAAAGPEGSKARYLAM 423
            RWE+QFKGAG TPYSR  DGRKVLRSSIREFLCSEAMH+LGIP+TRAA++VTSDT V+RD++YTG+VI E+A+IV R+APTFLRFGSFEIFK  D  +GR GPS GN  L K+ML Y++  FFP  AAAAAGP G  A  L M
Sbjct:  123 RWEMQFKGAGPTPYSRRGDGRKVLRSSIREFLCSEAMHYLGIPTTRAASMVTSDTLVQRDLFYTGDVINERATIVLRIAPTFLRFGSFEIFKGTDPTTGRRGPSEGNVDLLKKMLHYSLSTFFPEAAAAAAGPGGLPAGTLMM 265
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BLAST of mRNA_H-paniculata_contig13045.1908.1 vs. uniprot
Match: A0A0S7K1U9_9TELE (Selenoprotein O (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7K1U9_9TELE)

HSP 1 Score: 188 bits (478), Expect = 5.880e-58
Identity = 87/124 (70.16%), Postives = 104/124 (83.87%), Query Frame = 1 
Query:    1 RWEVQFKGAGLTPYSRTADGRKVLRSSIREFLCSEAMHFLGIPSTRAATLVTSDTKVRRDVYYTGNVIQEKASIVTRVAPTFLRFGSFEIFKSRDERSGREGPSYGNDALRKRMLDYAVRQFFP 372
            RWE+Q KGAG TP+SR ADGRKVLRSSIREFLCSEAM FLGIP+TRA ++VTSD+KV RD+YY+GN   EK S+V R+APTFLRFGSFEIFK  DE +GR+GPSYG + +R +MLDY +  F+P
Sbjct:   26 RWEIQVKGAGQTPFSRKADGRKVLRSSIREFLCSEAMFFLGIPTTRAGSVVTSDSKVVRDIYYSGNPCYEKCSVVLRIAPTFLRFGSFEIFKPADEFTGRQGPSYGREEIRGQMLDYVIEMFYP 149
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BLAST of mRNA_H-paniculata_contig13045.1908.1 vs. uniprot
Match: G3PJI5_GASAC (Selenoprotein O n=1 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3PJI5_GASAC)

HSP 1 Score: 194 bits (493), Expect = 7.010e-57
Identity = 89/124 (71.77%), Postives = 104/124 (83.87%), Query Frame = 1 
Query:    1 RWEVQFKGAGLTPYSRTADGRKVLRSSIREFLCSEAMHFLGIPSTRAATLVTSDTKVRRDVYYTGNVIQEKASIVTRVAPTFLRFGSFEIFKSRDERSGREGPSYGNDALRKRMLDYAVRQFFP 372
            RWE+Q KGAGLTPYSR ADGRKVLRSSIREFLCSE MHFLG+P+TRAA +VTSDT+V RDVYY+GN   E+ S V R+APTFLRFGSFEIFK  DE +GR+GPSYG D +R +M+DY +  F+P
Sbjct:  127 RWEMQVKGAGLTPYSRQADGRKVLRSSIREFLCSEVMHFLGVPTTRAACVVTSDTRVVRDVYYSGNPRNERCSAVVRIAPTFLRFGSFEIFKQADEHTGRQGPSYGRDEIRGQMMDYVIEMFYP 250
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BLAST of mRNA_H-paniculata_contig13045.1908.1 vs. uniprot
Match: G3PJH3_GASAC (Selenoprotein O n=1 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3PJH3_GASAC)

HSP 1 Score: 194 bits (493), Expect = 1.120e-56
Identity = 89/124 (71.77%), Postives = 104/124 (83.87%), Query Frame = 1 
Query:    1 RWEVQFKGAGLTPYSRTADGRKVLRSSIREFLCSEAMHFLGIPSTRAATLVTSDTKVRRDVYYTGNVIQEKASIVTRVAPTFLRFGSFEIFKSRDERSGREGPSYGNDALRKRMLDYAVRQFFP 372
            RWE+Q KGAGLTPYSR ADGRKVLRSSIREFLCSE MHFLG+P+TRAA +VTSDT+V RDVYY+GN   E+ S V R+APTFLRFGSFEIFK  DE +GR+GPSYG D +R +M+DY +  F+P
Sbjct:  139 RWEMQVKGAGLTPYSRQADGRKVLRSSIREFLCSEVMHFLGVPTTRAACVVTSDTRVVRDVYYSGNPRNERCSAVVRIAPTFLRFGSFEIFKQADEHTGRQGPSYGRDEIRGQMMDYVIEMFYP 262
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BLAST of mRNA_H-paniculata_contig13045.1908.1 vs. uniprot
Match: A0A3Q1BB36_AMPOC (Selenoprotein O n=2 Tax=Pomacentridae TaxID=30863 RepID=A0A3Q1BB36_AMPOC)

HSP 1 Score: 193 bits (491), Expect = 2.150e-56
Identity = 88/124 (70.97%), Postives = 106/124 (85.48%), Query Frame = 1 
Query:    1 RWEVQFKGAGLTPYSRTADGRKVLRSSIREFLCSEAMHFLGIPSTRAATLVTSDTKVRRDVYYTGNVIQEKASIVTRVAPTFLRFGSFEIFKSRDERSGREGPSYGNDALRKRMLDYAVRQFFP 372
            RWE+Q KGAGLTPYSR ADGRKVLRSSIREFLCSEAMHFLG+P+TRA ++VTSD++V RDVYY+GN   E+ S+V R+APTFLRFGSFEIFK  DE +GR+GPSYG D +R +M+DY +  F+P
Sbjct:   52 RWEIQVKGAGLTPYSRQADGRKVLRSSIREFLCSEAMHFLGVPTTRAGSVVTSDSRVIRDVYYSGNPRHERCSVVLRIAPTFLRFGSFEIFKQADEFTGRQGPSYGRDEIRGQMMDYVIDMFYP 175
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BLAST of mRNA_H-paniculata_contig13045.1908.1 vs. uniprot
Match: G3PJH9_GASAC (Selenoprotein O n=4 Tax=Gasterosteidae TaxID=69291 RepID=G3PJH9_GASAC)

HSP 1 Score: 194 bits (493), Expect = 2.740e-56
Identity = 89/124 (71.77%), Postives = 104/124 (83.87%), Query Frame = 1 
Query:    1 RWEVQFKGAGLTPYSRTADGRKVLRSSIREFLCSEAMHFLGIPSTRAATLVTSDTKVRRDVYYTGNVIQEKASIVTRVAPTFLRFGSFEIFKSRDERSGREGPSYGNDALRKRMLDYAVRQFFP 372
            RWE+Q KGAGLTPYSR ADGRKVLRSSIREFLCSE MHFLG+P+TRAA +VTSDT+V RDVYY+GN   E+ S V R+APTFLRFGSFEIFK  DE +GR+GPSYG D +R +M+DY +  F+P
Sbjct:  166 RWEMQVKGAGLTPYSRQADGRKVLRSSIREFLCSEVMHFLGVPTTRAACVVTSDTRVVRDVYYSGNPRNERCSAVVRIAPTFLRFGSFEIFKQADEHTGRQGPSYGRDEIRGQMMDYVIEMFYP 289
[Close]
BLAST of mRNA_H-paniculata_contig13045.1908.1 vs. uniprot
Match: A0A4Z2HSQ3_9TELE (Selenoprotein O n=2 Tax=Cottales TaxID=1490021 RepID=A0A4Z2HSQ3_9TELE)

HSP 1 Score: 194 bits (492), Expect = 1.160e-55
Identity = 89/124 (71.77%), Postives = 104/124 (83.87%), Query Frame = 1 
Query:    1 RWEVQFKGAGLTPYSRTADGRKVLRSSIREFLCSEAMHFLGIPSTRAATLVTSDTKVRRDVYYTGNVIQEKASIVTRVAPTFLRFGSFEIFKSRDERSGREGPSYGNDALRKRMLDYAVRQFFP 372
            RWE+Q KGAGLTPYSR ADGRKVLRSSIREFLCSE MHFLG+P+TRA ++VTSDTKV RDVYYTGN   E+ S+V R+APTFLRFGSFEIFK  DE +GR+GPS G D +R +M+DY +  F+P
Sbjct:  170 RWEIQVKGAGLTPYSRQADGRKVLRSSIREFLCSEVMHFLGVPTTRAGSVVTSDTKVVRDVYYTGNPRLERCSVVVRIAPTFLRFGSFEIFKRADEHTGRQGPSCGRDEIRGQMMDYVIEMFYP 293
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BLAST of mRNA_H-paniculata_contig13045.1908.1 vs. uniprot
Match: UPI00159C7B41 (selenoprotein O1 n=2 Tax=Hippoglossus TaxID=8266 RepID=UPI00159C7B41)

HSP 1 Score: 194 bits (492), Expect = 1.220e-55
Identity = 89/124 (71.77%), Postives = 106/124 (85.48%), Query Frame = 1 
Query:    1 RWEVQFKGAGLTPYSRTADGRKVLRSSIREFLCSEAMHFLGIPSTRAATLVTSDTKVRRDVYYTGNVIQEKASIVTRVAPTFLRFGSFEIFKSRDERSGREGPSYGNDALRKRMLDYAVRQFFP 372
            RWE+Q KGAGLTPYSR ADGRKVLRSSIREFLCSEAM FLG+P+TRA ++VTSD++V RDVYY+GN  QE+ S+V R+APTFLRFGSFEIFK  DE +GR+GPSYG D +R +MLDY +  F+P
Sbjct:  170 RWEIQVKGAGLTPYSRQADGRKVLRSSIREFLCSEAMFFLGVPTTRAGSVVTSDSRVVRDVYYSGNPRQERCSVVLRIAPTFLRFGSFEIFKRADESTGRQGPSYGRDEIRGQMLDYVIEMFYP 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13045.1908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV32_9PHAE2.120e-7685.82Selenoprotein O n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A7S2V3H2_9STRA4.240e-5972.34Selenoprotein O n=1 Tax=Fibrocapsa japonica TaxID=... [more]
A0A836CN66_9STRA5.460e-5870.63Selenoprotein O n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A0S7K1U9_9TELE5.880e-5870.16Selenoprotein O (Fragment) n=1 Tax=Poeciliopsis pr... [more]
G3PJI5_GASAC7.010e-5771.77Selenoprotein O n=1 Tax=Gasterosteus aculeatus Tax... [more]
G3PJH3_GASAC1.120e-5671.77Selenoprotein O n=1 Tax=Gasterosteus aculeatus Tax... [more]
A0A3Q1BB36_AMPOC2.150e-5670.97Selenoprotein O n=2 Tax=Pomacentridae TaxID=30863 ... [more]
G3PJH9_GASAC2.740e-5671.77Selenoprotein O n=4 Tax=Gasterosteidae TaxID=69291... [more]
A0A4Z2HSQ3_9TELE1.160e-5571.77Selenoprotein O n=2 Tax=Cottales TaxID=1490021 Rep... [more]
UPI00159C7B411.220e-5571.77selenoprotein O1 n=2 Tax=Hippoglossus TaxID=8266 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13045contigH-paniculata_contig13045:1238..2218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score253.4
Seed ortholog evalue6.1e-65
Seed eggNOG ortholog2880.D8LIY8
Preferred nameSELENOO
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Uncharacterized ACR, YdiU/UPF0061 family
EggNOG OGsCOG0397@1,KOG2542@2759
Ec32 ortholog descriptionselenoprotein O homolog, but not a selenoprotein itself
Ec32 orthologEc-20_002060.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929030.4591436-CDS-H-paniculata_contig13045:1237..14441622929030.4591436-CDS-H-paniculata_contig13045:1237..1444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13045 1238..1444 -
1691480705.8910463-CDS-H-paniculata_contig13045:1237..14441691480705.8910463-CDS-H-paniculata_contig13045:1237..1444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13045 1238..1444 -
1622929030.472724-CDS-H-paniculata_contig13045:1999..22181622929030.472724-CDS-H-paniculata_contig13045:1999..2218Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13045 2000..2218 -
1691480705.9033153-CDS-H-paniculata_contig13045:1999..22181691480705.9033153-CDS-H-paniculata_contig13045:1999..2218Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13045 2000..2218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13045.1908.1prot_H-paniculata_contig13045.1908.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13045 1238..2218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13045.1908.1

>prot_H-paniculata_contig13045.1908.1 ID=prot_H-paniculata_contig13045.1908.1|Name=mRNA_H-paniculata_contig13045.1908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
RWEVQFKGAGLTPYSRTADGRKVLRSSIREFLCSEAMHFLGIPSTRAATL
VTSDTKVRRDVYYTGNVIQEKASIVTRVAPTFLRFGSFEIFKSRDERSGR
EGPSYGNDALRKRMLDYAVRQFFPAAAAAGPEGSKARYLAM*
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mRNA from alignment at H-paniculata_contig13045:1238..2218-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13045.1908.1 ID=mRNA_H-paniculata_contig13045.1908.1|Name=mRNA_H-paniculata_contig13045.1908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=981bp|location=Sequence derived from alignment at H-paniculata_contig13045:1238..2218- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGGAAGTCCAGTTTAAAGGCGCGGGGCTGACACCGTACAGCCGAAC
CGCGGACGGTCGCAAAGTGCTGCGCTCGTCCATTCGGGAGTTCCTTTGCT
CCGAGGCGATGCATTTTCTAGGAATTCCCTCGACCCGCGCCGCTACGCTT
GTGACATCGGACACTAAAGTCCGGCGAGATGTGTATTACACAGGAAACGT
TATCCAGGAGAAGGCGTCGGTATGTGTTTTTTTAGTGCTTTTGGTGCCCG
TTTTTTTATTTTTTTGCAGTTGAAAATGTCAGTTCGTAAAAAAAATTCTA
CCTCGTGGTGTGGGTTGTTGTCGCCGTGGTCATTGGTTGTTTCGCGGGGC
ATGTTTTCGTATTTGCAACCATTGACGAAGAGATTGTGCGCTTAGGGAGG
ATACCTGACTGCCTCCATGATGGTAATTATATTTACGTTTGACTGTTTTA
CGTATTTTGCCGCATATATGCCGCGTTTTTGTCGATTCTTAATTCGTTTT
TGGCATCTTTATTAATGTAAATTTGATAACATGTTGCACATAAGTGAAGG
TTAAGGCCAACTACATAACCTCAAAATGAGTACGATGATGAAGGCTATTG
GACTGTCTTTTGTCATCGTTTTAATCACTGTGGTCCTTGGGTTGACTTGT
GACGGGTGCTTCCTTGGGGCAGGTGAATGGGTTGTTTTATTTCTCTTATC
CGTTCGCGTAGAAGAAAATCATCCTCCCGCCTCCATCCCTTCCTCTGTTA
CAACATAAACACGCCCCGGTCTAGATCGTAACACGCGTGGCACCAACTTT
CCTGAGGTTCGGGTCGTTTGAGATATTCAAGTCCAGGGACGAGCGATCAG
GTCGTGAGGGGCCGAGTTATGGCAACGACGCCCTCCGCAAGCGCATGCTG
GATTATGCGGTACGGCAGTTCTTCCCCGCAGCGGCGGCAGCGGGGCCTGA
GGGCTCCAAGGCACGATATTTGGCAATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13045:1238..2218-

>mRNA_H-paniculata_contig13045.1908.1 ID=mRNA_H-paniculata_contig13045.1908.1|Name=mRNA_H-paniculata_contig13045.1908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig13045:1238..2218- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGGAAGTCCAGTTTAAAGGCGCGGGGCTGACACCGTACAGCCGAAC
CGCGGACGGTCGCAAAGTGCTGCGCTCGTCCATTCGGGAGTTCCTTTGCT
CCGAGGCGATGCATTTTCTAGGAATTCCCTCGACCCGCGCCGCTACGCTT
GTGACATCGGACACTAAAGTCCGGCGAGATGTGTATTACACAGGAAACGT
TATCCAGGAGAAGGCGTCGAGGTGGGAAGTCCAGTTTAAAGGCGCGGGGC
TGACACCGTACAGCCGAACCGCGGACGGTCGCAAAGTGCTGCGCTCGTCC
ATTCGGGAGTTCCTTTGCTCCGAGGCGATGCATTTTCTAGGAATTCCCTC
GACCCGCGCCGCTACGCTTGTGACATCGGACACTAAAGTCCGGCGAGATG
TGTATTACACAGGAAACGTTATCCAGGAGAAGGCGTCGATCGTAACACGC
GTGGCACCAACTTTCCTGAGGTTCGGGTCGTTTGAGATATTCAAGTCCAG
GGACGAGCGATCAGGTCGTGAGGGGCCGAGTTATGGCAACGACGCCCTCC
GCAAGCGCATGCTGGATTATGCGGTACGGCAGTTCTTCCCCGCAGCGGCG
GCAGCGGGGCCTGAGGGCTCCAAGGCACGATATTTGGCAATGTGAATCGT
AACACGCGTGGCACCAACTTTCCTGAGGTTCGGGTCGTTTGAGATATTCA
AGTCCAGGGACGAGCGATCAGGTCGTGAGGGGCCGAGTTATGGCAACGAC
GCCCTCCGCAAGCGCATGCTGGATTATGCGGTACGGCAGTTCTTCCCCGC
AGCGGCGGCAGCGGGGCCTGAGGGCTCCAAGGCACGATATTTGGCAATGT
GA
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