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Homology
BLAST of mRNA_H-paniculata_contig12985.1875.1 vs. uniprot
Match: D8LAV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV2_ECTSI) HSP 1 Score: 246 bits (628), Expect = 3.710e-67 Identity = 149/256 (58.20%), Postives = 177/256 (69.14%), Query Frame = 1
Query: 1 QSAMESLLRDKSLRGQRVFECRNGGYVMFVAKVDFVPDIIMKLARKEIIEGGGSGDEGSSGEVGGNEGDDVGSS-GRPSSPGFSEKTDFAWVPASSLLRAMRESRHRSTRKVVVKLGGCRHLCLFHKFVISLWGLNLPSVIKAASTPLRRRKRPLPAPRVLLLKAKTPSASTAAFSRIDKSGAASHRLGFSNDGDKASEEQQLGEEENEDASDASPLVGGMMKGGAVVRTCAIRGIDCVRPSFLSGRKRTSLGIID 765
Q+ M S LRD SLRG+RVFECRNGGYVMFVA+VDFVPD+++ LARKEI+ G++GS + G +G+ GS G+ SSPGFSEKTDFAWVPAS LLRAMRESR+RSTRKVVVKLGGCR+L LFHKFVISLWGL+L +VI+AASTPL+ R+ LP PR LL+K+ + SR D S + + G E ++ A+ A R AIRGIDCVRPSFLSGRKRTSLGIID
Sbjct: 467 QATMSSALRDPSLRGKRVFECRNGGYVMFVAEVDFVPDLMINLARKEIV-----GEDGSGPDAVGVQGECWGSGQGQASSPGFSEKTDFAWVPASVLLRAMRESRNRSTRKVVVKLGGCRYLRLFHKFVISLWGLDLAAVIQAASTPLQGRRASLPRPRTLLVKS-----NAEPISRCD------------------SNQDETGGESSDGATSAE-------------RCAAIRGIDCVRPSFLSGRKRTSLGIID 681
BLAST of mRNA_H-paniculata_contig12985.1875.1 vs. uniprot
Match: A0A6H5JSG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG8_9PHAE) HSP 1 Score: 236 bits (601), Expect = 2.310e-63 Identity = 148/262 (56.49%), Postives = 172/262 (65.65%), Query Frame = 1
Query: 1 QSAMESLLRDKSLRGQRVFECRNGGYVMFVAKVDFVPDIIMKLARKEIIEGGGSGDE--GSSGEVGGNEGDDVGSSGRPSSPGFSEKTDFAWVPASSLLRAMRESRHRSTRKVVVKLGGCRHLCLFHK-----FVISLWGLNLPSVIKAASTPLRRRKRPLPAPRVLLLKAKTPSASTAAFSRIDKSGAASHRLGFSNDGDKASEEQQLGEEENEDASDASPLVGGMMKGGAVVRTCAIRGIDCVRPSFLSGRKRTSLGIID 765
Q+ M S LRD SLRG+RVFECRNGGYVMFVA+VDFVPD+++ LARKEI+ SG + G GE GG+ G+ SSPGFSEKTDFAWVPAS LLRAMRESR+RSTRKVVVKLGGCR+L LFHK FVISLWGL+L +VI+AASTP+ R LP PR+LL+K+ + SR D S Q G E ++ A+ A + AIRGIDCVRPSFLSGRKRTSLGIID
Sbjct: 465 QATMSSALRDPSLRGKRVFECRNGGYVMFVAEVDFVPDLMINLARKEIVGEDDSGSDAVGVQGEHGGS------GQGQASSPGFSEKTDFAWVPASVLLRAMRESRNRSTRKVVVKLGGCRYLRLFHKASRFSFVISLWGLDLAAVIQAASTPVHGRAASLPRPRILLVKS-----NAEPISRRD------------------SNRDQTGGESSDGATSAE-------------QCAAIRGIDCVRPSFLSGRKRTSLGIID 684
BLAST of mRNA_H-paniculata_contig12985.1875.1 vs. uniprot
Match: A0A7S3XND0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XND0_HETAK) HSP 1 Score: 72.0 bits (175), Expect = 1.600e-9 Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query: 241 GFSEKTDFAWVPASSLLRAMRESRHRSTRKVVVKLGGCRHLCLFHKFVISLWGLNLPSVI 420
G SEK DFAWVPA SL++ + E+ +RS RKV ++LGGCR +FHKFV SL+ +L +++
Sbjct: 273 GDSEKLDFAWVPAQSLVKTLEENANRSRRKVSLRLGGCRVFRMFHKFVFSLYSADLAAIV 332
BLAST of mRNA_H-paniculata_contig12985.1875.1 vs. uniprot
Match: A0A7S2UYN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYN6_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 2.130e-9 Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 250 EKTDFAWVPASSLLRAMRESRHRSTRKVVVKLGGCRHLCLFHKFVISLWGLNLPSVIKA 426
EK DFAWVPA L + +R RH+S R V +++G CR LFHKFV SL+ L+L V+ A
Sbjct: 11 EKVDFAWVPARDLAQELRRCRHKSRRGVCLRMGRCRVFRLFHKFVFSLYSLDLEQVLDA 69
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-27_006290.1 |
| Exons | 3 |
| Model size | 2242 |
| Cds size | 1368 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12985.1875.1 >prot_H-paniculata_contig12985.1875.1 ID=prot_H-paniculata_contig12985.1875.1|Name=mRNA_H-paniculata_contig12985.1875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=456bp
MESLLRDKSLRGQRVFECRNGGYVMFVAKVDFVPDIIMKLARKEIIEGGG
SGDEGSSGEVGGNEGDDVGSSGRPSSPGFSEKTDFAWVPASSLLRAMRES
RHRSTRKVVVKLGGCRHLCLFHKFVISLWGLNLPSVIKAASTPLRRRKRP
LPAPRVLLLKAKTPSASTAAFSRIDKSGAASHRLGFSNDGDKASEEQQLG
EEENEDASDASPLVGGMMKGGAVVRTCAIRGIDCVRPSFLSGRKRTSLGI
IDEPSPRLRRGDAYWGGASTSKSQNQRMGGSQGREDTVSDCGPVCGVGCT
NSGIPGAHCARGGVGDYDKLKEAWWSAGDVREHVDATSATPCVLAERTGS
GTGSGTAAGIGAAPHLTAWAAISGNAGGSSSSVRAAAENGVKKRRGKKSG
AACRKRRRRCKEARRLKAASMAAALGAGIDRAAAVNLVPADASSVASDAV
AGGVA* back to topmRNA from alignment at H-paniculata_contig12985:3504..6812- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig12985.1875.1 ID=mRNA_H-paniculata_contig12985.1875.1|Name=mRNA_H-paniculata_contig12985.1875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3309bp|location=Sequence derived from alignment at H-paniculata_contig12985:3504..6812- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCAGCAATGGAATCGCTCCTTCGTGACAAGTCCCTGAGGGGCCAGCG
GGTGTTCGAGTGTCGCAATGGTGGGTACGTTATGTTCGTTGCAAAGGTGG
ACTTCGTTCCTGACATCATCATGAAGCTCGCCAGAAAGGAGATCATTGAG
GGCGGCGGCAGCGGCGATGAGGGCAGCAGCGGCGAAGTCGGCGGAAACGA
AGGCGATGATGTCGGTAGTTCAGGTGTGCTCGCCGTTGCAATAGCAGCTT
TCGTCGCTTCGCGTGTCTTCGCAGCTTGAGCGCTCTCTGCTATTCATCTG
TTCATCGTTGTCCTGATTCTCTAAACGGCAGGGCAAATGTTTAGTCGGCC
TTCTTGACCGTTGCACTACTGTATACGCTGACCTCCCACGGTCATGTTTT
GTTGTGTGTGTTTCGTTGGCTCGTTTAAATTGGAAGTTCGGATGTGTATT
GGTTCGTACCCACGTTTTCCAACACGCGGTAGAGTGATACAGCGATAGGA
GTTGTGTGTATCGTCGACCGAGCTTGCTACCCACAACAATAAGAGTCGAG
AGCCATTTCTGCACGTAGTCGAACATGCATTGGCCTCCTTCTGAGCACAC
ACTAGTTTATTGAACCAGATGTCTTCAACACAATAGTGTTGATTCGTTGA
TTATGTTGTTTATTGGCGGGGCCCTGAGTGATGGGTCCATTGTTTTGGAG
TCGGGAAAATACATGGTAGTGGTGGTGGTGGTAGTGGTATTGCTGTTTCT
GGTGCTGGCGTTGTGTTGTTGCTTGTCGTAATCCTATTGTTGGGAATAAT
TGACTCCTTCGTCTCTTCTTGTACCTCGGTCGTTACAGGCAGACCTTCAT
CGCCGGGGTTCAGCGAAAAGACGGACTTTGCGTGGGTGCCGGCGTCGAGC
CTTCTACGAGCGATGCGAGAGAGCCGTCACCGGTCCACGAGAAAGGTGGT
TGTCAAGCTGGGAGGCTGCCGGCATCTCTGCCTATTTCACAAGGTGATTG
TCAATGTGGTCATGATTCATTGTTGTTGTTGTTGGTAGTTTGTCCTTCTT
GACGCATATGTCAATGCATCCGATCAGCTAGCTCCATTTATGCAATTACG
GCGATAAATGTGGGAGGGGCATGCGGTTGATGTTGCGCACCTCCGCCTGC
CTGGTACCCAGAAATGCAAAGACTACGATGGACGTAAATAGGAAGGCTGT
TAGTCCGTGCTATGTTGCTGTACTTATGCTGTAGTTTTCTCCCATGGAAA
AGTCACAAGCATGATCAAGTCCCTTTCTATTGCTCACTGGTGGAAGCTGA
GTCCATACAGTGAACGTTGTTGAAAAATGAACCGTTCTTTGCGAGGTTCC
GTTTTTGCCCCTTTTTCTCAGCTCGTCCCATCTCCATGTCCCACCGTGCT
TGTCGCCACCGCATGATGTTTCCCTCCTCTCTAAATGCTTTGCAGTTTGT
CATTTCGCTCTGGGGACTGAACCTACCATCAGTCATCAAGGCGGCTTCCA
CGCCGCTACGTCGTAGAAAAAGGCCATTACCGGCTCCCCGCGTTCTCCTC
TTGAAGGCCAAAACTCCCTCTGCCTCCACCGCGGCTTTTAGCCGTATTGA
CAAATCGGGCGCTGCATCGCACCGACTGGGATTCAGCAATGACGGCGATA
AGGCGTCCGAAGAGCAGCAGCTGGGCGAAGAAGAGAACGAGGACGCCAGC
GATGCTTCCCCCTTGGTGGGGGGTATGATGAAGGGCGGGGCGGTAGTTAG
AACCTGCGCCATTAGGGGGATCGACTGCGTACGACCCTCGTTTCTGTCGG
GTCGCAAGCGAACGAGCCTAGGAATTATCGACGAGCCTTCACCTCGATTG
CGTCGCGGCGATGCATACTGGGGTGGTGCATCCACCTCAAAATCGCAAAA
TCAACGAATGGGAGGAAGCCAGGGTCGGGAGGACACAGTTTCGGATTGCG
GACCAGTTTGCGGTGTTGGGTGTACCAATAGCGGTATCCCTGGTGCTCAT
TGCGCACGTGGTGGAGTCGGAGATTACGACAAATTAAAAGAAGCGTGGTG
GAGCGCGGGAGACGTCCGTGAACACGTCGATGCTACTAGCGCGACCCCTT
GTGTGCTGGCCGAGAGGACAGGTTCTGGCACAGGTTCAGGTACAGCTGCG
GGCATAGGAGCAGCACCGCATCTTACCGCTTGGGCAGCAATTAGCGGGAA
TGCCGGCGGCAGTAGCAGTAGCGTTCGCGCAGCGGCGGAAAACGGGGTTA
AGAAACGCCGCGGGAAAAAGAGCGGCGCGGCGTGTAGGAAAAGACGGCGG
CGATGCAAAGAAGCTCGGCGGCTGAAGGCAGCGTCGATGGCCGCGGCTCT
GGGAGCAGGGATAGATAGGGCGGCAGCAGTCAATTTAGTCCCGGCTGATG
CGTCCTCCGTTGCCAGCGATGCTGTCGCGGGAGGAGTCGCGTAAAAGGAA
AGTATGCACGACCGGTACTCGAAAACGCGGGTGATTGAACAACAATAGTT
TTTTATTCGATTTGTTGACGAATGTAAATGATCGTAATTTTTTTCAGATA
GAATGATCTATTTTGTTCATATACGAACTTCGGCAAGCAGTTCCGTGTGC
GTGTGGTCTATTTTTGGCGCCAATCAGGCGACTGCTTGAAAAATTTGGAC
CAATCAGATTACATTGCATGTGAACTGTTATGTACAGTACTTGATGAGGT
GGAGGGTGCCAGGAGTCATGAGATGAAGACAACTGGAGTTTGATACAGCA
GCAGGAGAGTCTGTAGACGGTGACACGACCCTGCCTGGTGGAGGCTGGGG
GCGCAACACACGACCAAAGTTCTGTTTTTGCCGCCGAGTTCCTATCGTGG
TATGCGGAGGGTGCGCGTGTGCGGTTTGTAAATAATAGCTTCGAGGATTC
GCCTCTCTGCATTGTAAGTATATAGGCTAATAGAGATACTGTAGTCCTTC
TCTATACACTGCTCGATGGACGCCGCAACTCGTCCCACCGTTGCGGTGAG
TAGTTAACAGCGGTCGCAATTGGCTTTGAGTGCGTGATGGCAAGTTGTGC
TGTCACAAAAAATGTCCTTGTACGTAGTAGTATATTCAGAGACTTATAGG
GGTTGTAATACGTTACGATATTTACCCTTGCCACGACTAGTGATACGTGC
AGTACACAAGCCGGAAGTAAATGTGCTGCCGTCCGCTCAATAAGCAAAAT
GGTGTCGAATTTTTAGTGTGCTATTCTGCAACTGTGGTGCACTTGGCCTC
GGACTTGACTTCTAGCAGGGTAAAGCGTGTATACAAAGTTATTGTGTTTT
ATAATGGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig12985:3504..6812- >mRNA_H-paniculata_contig12985.1875.1 ID=mRNA_H-paniculata_contig12985.1875.1|Name=mRNA_H-paniculata_contig12985.1875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2736bp|location=Sequence derived from alignment at H-paniculata_contig12985:3504..6812- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAATCGCTCCTTCGTGACAAGTCCCTGAGGGGCCAGCGGGTGTTCGA
GTGTCGCAATGGTGGGTACGTTATGTTCGTTGCAAAGGTGGACTTCGTTC
CTGACATCATCATGAAGCTCGCCAGAAAGGAGATCATTGAGGGCGGCGGC
AGCGGCGATGAGGGCAGCAGCGGCGAAGTCGGCGGAAACGAAGGCGATGA
TGTCGGTAGTTCAGATGGAATCGCTCCTTCGTGACAAGTCCCTGAGGGGC
CAGCGGGTGTTCGAGTGTCGCAATGGTGGGTACGTTATGTTCGTTGCAAA
GGTGGACTTCGTTCCTGACATCATCATGAAGCTCGCCAGAAAGGAGATCA
TTGAGGGCGGCGGCAGCGGCGATGAGGGCAGCAGCGGCGAAGTCGGCGGA
AACGAAGGCGATGATGTCGGTAGTTCAGGCAGACCTTCATCGCCGGGGTT
CAGCGAAAAGACGGACTTTGCGTGGGTGCCGGCGTCGAGCCTTCTACGAG
CGATGCGAGAGAGCCGTCACCGGTCCACGAGAAAGGTGGTTGTCAAGCTG
GGAGGCTGCCGGCATCTCTGCCTATTTCACAAGGCAGACCTTCATCGCCG
GGGTTCAGCGAAAAGACGGACTTTGCGTGGGTGCCGGCGTCGAGCCTTCT
ACGAGCGATGCGAGAGAGCCGTCACCGGTCCACGAGAAAGGTGGTTGTCA
AGCTGGGAGGCTGCCGGCATCTCTGCCTATTTCACAAGTTTGTCATTTCG
CTCTGGGGACTGAACCTACCATCAGTCATCAAGGCGGCTTCCACGCCGCT
ACGTCGTAGAAAAAGGCCATTACCGGCTCCCCGCGTTCTCCTCTTGAAGG
CCAAAACTCCCTCTGCCTCCACCGCGGCTTTTAGCCGTATTGACAAATCG
GGCGCTGCATCGCACCGACTGGGATTCAGCAATGACGGCGATAAGGCGTC
CGAAGAGCAGCAGCTGGGCGAAGAAGAGAACGAGGACGCCAGCGATGCTT
CCCCCTTGGTGGGGGGTATGATGAAGGGCGGGGCGGTAGTTAGAACCTGC
GCCATTAGGGGGATCGACTGCGTACGACCCTCGTTTCTGTCGGGTCGCAA
GCGAACGAGCCTAGGAATTATCGACGAGCCTTCACCTCGATTGCGTCGCG
GCGATGCATACTGGGGTGGTGCATCCACCTCAAAATCGCAAAATCAACGA
ATGGGAGGAAGCCAGGGTCGGGAGGACACAGTTTCGGATTGCGGACCAGT
TTGCGGTGTTGGGTGTACCAATAGCGGTATCCCTGGTGCTCATTGCGCAC
GTGGTGGAGTCGGAGATTACGACAAATTAAAAGAAGCGTGGTGGAGCGCG
GGAGACGTCCGTGAACACGTCGATGCTACTAGCGCGACCCCTTGTGTGCT
GGCCGAGAGGACAGGTTCTGGCACAGGTTCAGGTACAGCTGCGGGCATAG
GAGCAGCACCGCATCTTACCGCTTGGGCAGCAATTAGCGGGAATGCCGGC
GGCAGTAGCAGTAGCGTTCGCGCAGCGGCGGAAAACGGGGTTAAGAAACG
CCGCGGGAAAAAGAGCGGCGCGGCGTGTAGGAAAAGACGGCGGCGATGCA
AAGAAGCTCGGCGGCTGAAGGCAGCGTCGATGGCCGCGGCTCTGGGAGCA
GGGATAGATAGGGCGGCAGCAGTCAATTTAGTCCCGGCTGATGCGTCCTC
CGTTGCCAGCGATGCTGTCGCGGGAGGAGTCGCGTAATTTGTCATTTCGC
TCTGGGGACTGAACCTACCATCAGTCATCAAGGCGGCTTCCACGCCGCTA
CGTCGTAGAAAAAGGCCATTACCGGCTCCCCGCGTTCTCCTCTTGAAGGC
CAAAACTCCCTCTGCCTCCACCGCGGCTTTTAGCCGTATTGACAAATCGG
GCGCTGCATCGCACCGACTGGGATTCAGCAATGACGGCGATAAGGCGTCC
GAAGAGCAGCAGCTGGGCGAAGAAGAGAACGAGGACGCCAGCGATGCTTC
CCCCTTGGTGGGGGGTATGATGAAGGGCGGGGCGGTAGTTAGAACCTGCG
CCATTAGGGGGATCGACTGCGTACGACCCTCGTTTCTGTCGGGTCGCAAG
CGAACGAGCCTAGGAATTATCGACGAGCCTTCACCTCGATTGCGTCGCGG
CGATGCATACTGGGGTGGTGCATCCACCTCAAAATCGCAAAATCAACGAA
TGGGAGGAAGCCAGGGTCGGGAGGACACAGTTTCGGATTGCGGACCAGTT
TGCGGTGTTGGGTGTACCAATAGCGGTATCCCTGGTGCTCATTGCGCACG
TGGTGGAGTCGGAGATTACGACAAATTAAAAGAAGCGTGGTGGAGCGCGG
GAGACGTCCGTGAACACGTCGATGCTACTAGCGCGACCCCTTGTGTGCTG
GCCGAGAGGACAGGTTCTGGCACAGGTTCAGGTACAGCTGCGGGCATAGG
AGCAGCACCGCATCTTACCGCTTGGGCAGCAATTAGCGGGAATGCCGGCG
GCAGTAGCAGTAGCGTTCGCGCAGCGGCGGAAAACGGGGTTAAGAAACGC
CGCGGGAAAAAGAGCGGCGCGGCGTGTAGGAAAAGACGGCGGCGATGCAA
AGAAGCTCGGCGGCTGAAGGCAGCGTCGATGGCCGCGGCTCTGGGAGCAG
GGATAGATAGGGCGGCAGCAGTCAATTTAGTCCCGGCTGATGCGTCCTCC
GTTGCCAGCGATGCTGTCGCGGGAGGAGTCGCGTAA back to top
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