mRNA_H-paniculata_contig1298.1870.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1298.1870.1 vs. uniprot
Match: D7FTX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTX5_ECTSI) HSP 1 Score: 186 bits (473), Expect = 1.500e-48 Identity = 115/281 (40.93%), Postives = 143/281 (50.89%), Query Frame = 3 Query: 2997 EDDLWELSQGLAGTNGVCCRRGYAKRSSGNDEFPVTVVVMPKVGLRYAVRERLWRAFLAHRQLATGGCVMHSLGFADQDSEETLFYYEHIRARSVSVVLRGRQLAEGDLLFRHWSRCALVCLAQICEQSTFKMEQLVTSANLMVAGQGTILRLAGIRWGPELHGPDTAAAAAENSALEREAQLCTEFADILEELLGFAEQVKSRVAGELDKESAVP-----------SPILANILACLRLPPKSREEITLKTLKSHQYFAPLGADDLQGRLQSDWKELLRQ 3806 +DD WE+SQGLAG + CRRG A R + N+E PVTVV MPKV Y+ RE+LWRAFLAHRQLA G R AL C+AQ+ EQSTF +E+ +++ANLM+ QG +LRL G+RWG E+HG A E + R+ LC A+ LE LLGF G D A S +L N+L+ LRLP SRE ITLK L HQYFAPL D++ + S WK L+ Q Sbjct: 100 QDDPWEVSQGLAGREAISCRRGLANRPNSNEELPVTVVAMPKVETGYSAREKLWRAFLAHRQLALG-------------------------------------------------RGALACVAQLSEQSTFTLERRISTANLMIGEQGCVLRLGGLRWGAEIHGVGQAT---ETALRRRDTDLCLGLAETLEGLLGFGRSKDDDETGAEDNNPADSKELGSNTQDKMSLMLVNVLSWLRLPAGSREGITLKGLLGHQYFAPLRHTDVESEIPSAWKTLMDQ 328 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1298.1870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1298.1870.1 >prot_H-paniculata_contig1298.1870.1 ID=prot_H-paniculata_contig1298.1870.1|Name=mRNA_H-paniculata_contig1298.1870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp MPKVGLRYAVRERLWRAFLAHRQLATGGCVMHSLGFADQDSEETLFYYEHback to top mRNA from alignment at H-paniculata_contig1298:2..9980+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1298.1870.1 ID=mRNA_H-paniculata_contig1298.1870.1|Name=mRNA_H-paniculata_contig1298.1870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9979bp|location=Sequence derived from alignment at H-paniculata_contig1298:2..9980+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1298:2..9980+ >mRNA_H-paniculata_contig1298.1870.1 ID=mRNA_H-paniculata_contig1298.1870.1|Name=mRNA_H-paniculata_contig1298.1870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig1298:2..9980+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |