mRNA_H-paniculata_contig12973.1866.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig12973.1866.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA) HSP 1 Score: 147 bits (371), Expect = 4.430e-41 Identity = 73/176 (41.48%), Postives = 103/176 (58.52%), Query Frame = 1 Query: 1 SRMRKVYTLRQKSEALWTLKQFERDVARANGLWIKRLRSDQGGEYTGKPLRQFCAENGIKQEISAVYTPQQIGVAERSWRRIFEMARASMITANMGRRYLAGAVRSAVYCLNRAPTRPHNGGTPYKKWHGETSKLDHLRVFGCTAYFMFQSQQRRKLDDKAWAGVLLGYDEDSPSY 528 +RM VY L++KSE K F+ V +G IK LRSD+GGE+ FC E G++ +++ YTPQQ GV ER R + EMAR+ +I ++ +++ A AV +AVY LNR PT+ TP + W G+ +DH R+FGC Y Q+R KL++K G+ LGY S Y Sbjct: 20 TRMAWVYFLKEKSETFGIFKNFKLLVENQSGQKIKILRSDRGGEFNSCQFEDFCKEEGLEHQLTVAYTPQQNGVTERKNRTVMEMARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGY 195
BLAST of mRNA_H-paniculata_contig12973.1866.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY) HSP 1 Score: 154 bits (389), Expect = 3.720e-40 Identity = 78/171 (45.61%), Postives = 110/171 (64.33%), Query Frame = 1 Query: 16 VYTLRQKSEALWTLKQFERDVARANGLWIKRLRSDQGGEYTGKPLRQFCAENGIKQEISAVYTPQQIGVAERSWRRIFEMARASMITANMGRRYLAGAVRSAVYCLNRAPTRPHNGGTPYKKWHGETSKLDHLRVFGCTAYFMFQSQQRRKLDDKAWAGVLLGYDEDSPSY 528 +Y L++KSEAL L++F+ + +G ++K LRSD+GGEYT K +FC E+GI +++A YTPQQ GVAER R I +MAR+ + + R + A AVR AVY LNR PT+ TP + W G+ + HL++FGC AY Q R+KLDD+ + +GYDE S +Y Sbjct: 320 IYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAY 490
BLAST of mRNA_H-paniculata_contig12973.1866.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY) HSP 1 Score: 152 bits (385), Expect = 1.250e-39 Identity = 77/171 (45.03%), Postives = 108/171 (63.16%), Query Frame = 1 Query: 16 VYTLRQKSEALWTLKQFERDVARANGLWIKRLRSDQGGEYTGKPLRQFCAENGIKQEISAVYTPQQIGVAERSWRRIFEMARASMITANMGRRYLAGAVRSAVYCLNRAPTRPHNGGTPYKKWHGETSKLDHLRVFGCTAYFMFQSQQRRKLDDKAWAGVLLGYDEDSPSY 528 +Y L++KSEAL LK+F+ + +G ++K LRSD+GGEYT K +FC E+GI +++A YTPQQ GVAER R I +MAR+ + + R + A AVR AVY LNR PT+ TP + W G+ + H ++FGC AY R+KLDD+ + +GYDE S +Y Sbjct: 425 IYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAY 595
BLAST of mRNA_H-paniculata_contig12973.1866.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU) HSP 1 Score: 150 bits (379), Expect = 7.490e-39 Identity = 77/176 (43.75%), Postives = 109/176 (61.93%), Query Frame = 1 Query: 1 SRMRKVYTLRQKSEALWTLKQFERDVARANGLWIKRLRSDQGGEYTGKPLRQFCAENGIKQEISAVYTPQQIGVAERSWRRIFEMARASMITANMGRRYLAGAVRSAVYCLNRAPTRPHNGGTPYKKWHGETSKLDHLRVFGCTAYFMFQSQQRRKLDDKAWAGVLLGYDEDSPSY 528 SRM VY L QKSEA KQF+ +G +K LR+D+GGE+T ++C NGIK+E++A YTPQQ GVAER R I EMAR+ + ++ + A A+ +AV+ LNR+PT+ TP++ WH K+D ++FGCTAY SQ+R K D+K + +GY + S +Y Sbjct: 213 SRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAY 388
BLAST of mRNA_H-paniculata_contig12973.1866.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU) HSP 1 Score: 150 bits (379), Expect = 8.020e-39 Identity = 77/176 (43.75%), Postives = 109/176 (61.93%), Query Frame = 1 Query: 1 SRMRKVYTLRQKSEALWTLKQFERDVARANGLWIKRLRSDQGGEYTGKPLRQFCAENGIKQEISAVYTPQQIGVAERSWRRIFEMARASMITANMGRRYLAGAVRSAVYCLNRAPTRPHNGGTPYKKWHGETSKLDHLRVFGCTAYFMFQSQQRRKLDDKAWAGVLLGYDEDSPSY 528 SRM VY L QKSEA KQF+ +G +K LR+D+GGE+T ++C NGIK+E++A YTPQQ GVAER R I EMAR+ + ++ + A A+ +AV+ LNR+PT+ TP++ WH K+D ++FGCTAY SQ+R K D+K + +GY + S +Y Sbjct: 450 SRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAY 625
BLAST of mRNA_H-paniculata_contig12973.1866.1 vs. uniprot
Match: A0A2H9ZU53_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZU53_9ASPA) HSP 1 Score: 147 bits (370), Expect = 1.060e-38 Identity = 77/176 (43.75%), Postives = 109/176 (61.93%), Query Frame = 1 Query: 1 SRMRKVYTLRQKSEALWTLKQFERDVARANGLWIKRLRSDQGGEYTGKPLRQFCAENGIKQEISAVYTPQQIGVAERSWRRIFEMARASMITANMGRRYLAGAVRSAVYCLNRAPTRPHNGGTPYKKWHGETSKLDHLRVFGCTAYFMFQSQQRRKLDDKAWAGVLLGYDEDSPSY 528 +RM VY L+ KSEAL K F+ V R +G +IK LR+D+GGE+ + FC ENGI +E++A YTP+Q GVAER R I EMAR+ + + ++ A +V +AVY LN +PT+ T Y+ W G S++ HL++FGC AY S R KL+DK+ + +GY S +Y Sbjct: 214 TRMNWVYFLKNKSEALEAFKIFKAFVERQSGYFIKVLRTDRGGEFLSHEFKAFCEENGIHRELTAPYTPEQNGVAERKNRTIVEMARSLLKAKGIPNQFWAESVATAVYLLNISPTKAILNRTLYEVWKGRKSRISHLKIFGCIAYVYVNSHDRHKLEDKSEKCIFIGYCPQSKAY 389
BLAST of mRNA_H-paniculata_contig12973.1866.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 147 bits (371), Expect = 9.550e-38 Identity = 72/176 (40.91%), Postives = 105/176 (59.66%), Query Frame = 1 Query: 1 SRMRKVYTLRQKSEALWTLKQFERDVARANGLWIKRLRSDQGGEYTGKPLRQFCAENGIKQEISAVYTPQQIGVAERSWRRIFEMARASMITANMGRRYLAGAVRSAVYCLNRAPTRPHNGGTPYKKWHGETSKLDHLRVFGCTAYFMFQSQQRRKLDDKAWAGVLLGYDEDSPSY 528 +RM V+ L++KS+ +F+ V GL +KRLRSD G EYT ++FC + GI+ +++ YTPQQ GV+ER R + EMAR + + + + A AV ++VY LN PT+ G TP++ WHG T ++HL+VFGC Y + +R KLD K+ G+ LGY S Y Sbjct: 485 TRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGY 660
BLAST of mRNA_H-paniculata_contig12973.1866.1 vs. uniprot
Match: A0A4Y2Q9L4_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2Q9L4_ARAVE) HSP 1 Score: 146 bits (368), Expect = 1.780e-37 Identity = 78/176 (44.32%), Postives = 101/176 (57.39%), Query Frame = 1 Query: 1 SRMRKVYTLRQKSEALWTLKQFERDVARANGLWIKRLRSDQGGEYTGKPLRQFCAENGIKQEISAVYTPQQIGVAERSWRRIFEMARASMITANMGRRYLAGAVRSAVYCLNRAPTRPHNGGTPYKKWHGETSKLDHLRVFGCTAYFMFQSQQRRKLDDKAWAGVLLGYDEDSPSY 528 SR +Y L +K E L LK++ G +K LRSD GGEY GK ++ F E GI +++ Y+PQQ GV+ER R + EM R + AN+ +R+ A A +A Y NR PT+P G TPY+ W L H+RVFGC AY Q Q+R KLD KA G+ LGYD S Y Sbjct: 339 SRYSMIYLLSKKDEVLSKLKEYIAMTRNKFGRTLKVLRSDNGGEYIGKEIKDFLKEQGIVHQLTVPYSPQQNGVSERKNRTLIEMTRCLLSEANLPQRFWAEAAMTATYLQNRLPTKP-KGKTPYELWTNRKPNLSHIRVFGCKAYAYIQKQKRGKLDSKAVEGIFLGYDYRSKGY 513
BLAST of mRNA_H-paniculata_contig12973.1866.1 vs. uniprot
Match: A0A2K3KY79_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KY79_TRIPR) HSP 1 Score: 142 bits (359), Expect = 3.830e-36 Identity = 77/176 (43.75%), Postives = 104/176 (59.09%), Query Frame = 1 Query: 1 SRMRKVYTLRQKSEALWTLKQFERDVARANGLWIKRLRSDQGGEYTGKPLRQFCAENGIKQEISAVYTPQQIGVAERSWRRIFEMARASMITANMGRRYLAGAVRSAVYCLNRAPTRPHNGGTPYKKWHGETSKLDHLRVFGCTAYFMFQSQQRRKLDDKAWAGVLLGYDEDSPSY 528 SR VY L KS+A T K F+ V + L IK LR+D+GGE+T +++C NGIK++++A YTPQQ GVAER R + M R+ ++ N+ R++ A AV A Y LNR PT TP + W G + HLRVFGC AY +R KL+DK+ VL G E+S +Y Sbjct: 218 SRKAWVYFLAYKSDAFTTFKLFKALVEKETDLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTAAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLNRCPTSSVKEMTPVEAWCGVKPSVGHLRVFGCIAYAHVPDARRTKLEDKSRCCVLFGVSEESKAY 393
BLAST of mRNA_H-paniculata_contig12973.1866.1 vs. uniprot
Match: A0A5C7H2W6_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7H2W6_9ROSI) HSP 1 Score: 141 bits (356), Expect = 4.640e-36 Identity = 77/176 (43.75%), Postives = 106/176 (60.23%), Query Frame = 1 Query: 1 SRMRKVYTLRQKSEALWTLKQFERDVARANGLWIKRLRSDQGGEYTGKPLRQFCAENGIKQEISAVYTPQQIGVAERSWRRIFEMARASMITANMGRRYLAGAVRSAVYCLNRAPTRPHNGGTPYKKWHGETSKLDHLRVFGCTAYFMFQSQQRRKLDDKAWAGVLLGYDEDSPSY 528 SR VY L +KSEAL T K F++ V + IK LR+D+GGE+T + +FC ENGIK++++A YTPQQ GVAER R I + R+ + + + + AV VY LNR+PT TP + W G ++H RVFGC A+ +R KL+DK+ A VLLG E+S +Y Sbjct: 197 SRKTWVYFLVEKSEALVTFKHFKKYVEKEMDACIKCLRTDRGGEFTSQDFNEFCKENGIKRQLTAAYTPQQNGVAERKNRTIMNLVRSMLSEKKIPKTFWPEAVNWTVYILNRSPTLVVKNITPEEAWSGIKPSVEHFRVFGCLAHVHVPDAKRTKLEDKSIACVLLGVSEESKAY 372 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12973.1866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12973.1866.1 >prot_H-paniculata_contig12973.1866.1 ID=prot_H-paniculata_contig12973.1866.1|Name=mRNA_H-paniculata_contig12973.1866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp MRKVYTLRQKSEALWTLKQFERDVARANGLWIKRLRSDQGGEYTGKPLRQback to top mRNA from alignment at H-paniculata_contig12973:6409..6936+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12973.1866.1 ID=mRNA_H-paniculata_contig12973.1866.1|Name=mRNA_H-paniculata_contig12973.1866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=528bp|location=Sequence derived from alignment at H-paniculata_contig12973:6409..6936+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12973:6409..6936+ >mRNA_H-paniculata_contig12973.1866.1 ID=mRNA_H-paniculata_contig12973.1866.1|Name=mRNA_H-paniculata_contig12973.1866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig12973:6409..6936+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |