mRNA_H-paniculata_contig12968.1860.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12968.1860.1
Unique NamemRNA_H-paniculata_contig12968.1860.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12968.1860.1 vs. uniprot
Match: D7FSA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA7_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.670e-12
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 DGDVAAQNGHLELLMSGQAKEFSSSAMDLXXXXXXXEVVQWLHANRSEGCT 153
            DGDVAAQ G L++L SGQAKEFS+ AMDL       EVVQWLH +R EGCT
Sbjct:    4 DGDVAAQKGQLDVLKSGQAKEFSTQAMDLAAANGHQEVVQWLHDHRKEGCT 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12968.1860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSA7_ECTSI2.670e-1266.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12968contigH-paniculata_contig12968:708..7191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-05_000680.1
Exons4
Model size552
Cds size552
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12968.1860.1prot_H-paniculata_contig12968.1860.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12968 708..7191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.8292184-CDS-H-paniculata_contig12968:707..8961622929022.8292184-CDS-H-paniculata_contig12968:707..896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12968 708..896 -
1691480703.1119895-CDS-H-paniculata_contig12968:707..8961691480703.1119895-CDS-H-paniculata_contig12968:707..896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12968 708..896 -
1622929022.8446372-CDS-H-paniculata_contig12968:3805..38891622929022.8446372-CDS-H-paniculata_contig12968:3805..3889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12968 3806..3889 -
1691480703.130611-CDS-H-paniculata_contig12968:3805..38891691480703.130611-CDS-H-paniculata_contig12968:3805..3889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12968 3806..3889 -
1622929022.8645835-CDS-H-paniculata_contig12968:4879..50061622929022.8645835-CDS-H-paniculata_contig12968:4879..5006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12968 4880..5006 -
1691480703.142377-CDS-H-paniculata_contig12968:4879..50061691480703.142377-CDS-H-paniculata_contig12968:4879..5006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12968 4880..5006 -
1622929022.8808312-CDS-H-paniculata_contig12968:7039..71911622929022.8808312-CDS-H-paniculata_contig12968:7039..7191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12968 7040..7191 -
1691480703.1516297-CDS-H-paniculata_contig12968:7039..71911691480703.1516297-CDS-H-paniculata_contig12968:7039..7191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12968 7040..7191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12968.1860.1

>prot_H-paniculata_contig12968.1860.1 ID=prot_H-paniculata_contig12968.1860.1|Name=mRNA_H-paniculata_contig12968.1860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp
DGDVAAQNGHLELLMSGQAKEFSSSAMDLAAANGHLEVVQWLHANRSEGC
TTAAMDEAAKNGHIDVVKFLHSNRQEGCTGGAMDMASRNGHLEMLKFLHE
NRSEGCSTLAVDFAAHNGHTEVVKWMFENRQEGCTPAAAEGAAGQGHDEI
VRYLKGHKRGRSVDYADVGSAIAQVQARRPSMK*
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mRNA from alignment at H-paniculata_contig12968:708..7191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12968.1860.1 ID=mRNA_H-paniculata_contig12968.1860.1|Name=mRNA_H-paniculata_contig12968.1860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6484bp|location=Sequence derived from alignment at H-paniculata_contig12968:708..7191- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGCGACGTGGCAGCGCAAAATGGGCATCTGGAACTGCTCATGAGCGG
TCAGGCCAAGGAATTCAGCTCAAGTGCAATGGACTTAGCCGCGGCGAACG
GTCACCTGGAGGTTGTGCAATGGCTTCATGCAAACCGTTCAGAAGGATGC
ACGTGAGCAGCAGTCTGCCGAAAGCGGTCGTAACATACCACAATTACTGT
AGTTATTCTCCAATACTGCGTATGCTACTAACTTATGCGTCATACTCTAC
TTACTGCACAGAGGATTTTGGTCGCAATATCCCTTATTTTTTTTTGTTTT
ACGCCGATGATGTATGCTGCTTGACTGCGCTGCTACATCATGCGTCACTA
CCTGATCCATGCATGAAAAGAGGATATAGTGCTCGCAAGAGATTTTCGAG
CATCAACGTAATCACAAGCTAATTTCGTGCGTCAAAAGGTCGAAAGAGTA
TGCTTTAGTTGGACGCCACAGATGGGCAGACATTACAATCTGTGCGCTTT
CAAAGATAGCCTTACTGGTTAGCGAACATATAAGTTGCCCTCTCGTTAAC
CCCGTAACTGCCTGTCTCACAACTCAAATCATCCTTACGCTGCTTCCAAC
TGAAAAAAAACAGTGGAAAATGACATCCAAATCATGATGACGAGGATGGA
CAGCGGTAGCTCATCTGGCACCCATTCCAGTACAGATATTACATGCAGTG
TAGAGAAGGAGTTGGCATGCTTCTCTGCCCAGAACGACTGACTGCAGAGC
TCGACATTAGGATCATTTGTTTTTTGTTCCGAAAGAGGTTCCGACGTCCG
CAGTCAAGTGTATTCTTTTCTTCGACAGTGTGCGGATAGGGACGGGTACG
TACTGGGTGTACTTACATACCGTAGTTCACGCGGTATTGTCACTGGAAAT
GATATTTTTACACAAGCCAATTTTCTTGAATAAGTACCGAACTTGTGCTG
GTGAAATTTGCGTCGTGTAAAATATCTCGGACGTTCGGACAGATCAGATC
AAAAAGACTATCTAATCGTACCAGAGGTTTTTATAGTGTGCTACTGAATT
GAGCAGAATGTTGTTTGCTGTCCTGTTGATTTAGTCGGCACAACGGCAGC
GTTCCTGCCCAGAACATGGCAATTATACCGAATTTAGTGTGCCTCTGAAG
TGAGCAGAACGTTGTATGCTATTCTGACGATTTAGTCGGCACGAGGGCAG
CGTTTCCATCCGCCCCCCATTTGATCTGCCCCGCATGCTGTTCTTCCGCT
TGCACCCCCGGAACTGGACAGCGAAGGGGATGCTGCTCTGTGTGTTCTGT
TTGCAGAAAGCCGAAACTTGATATTGAGATGTTTTATGAGATATATGTGC
CCCTTGTTTTTCTTCTCATTTCAGCAGTGTGGTCGTGTCTATAAAAAACT
GGAACTTGAAAAAGTTGTCATTCATGAGATGGTTGTTTCCATCGATTACT
GAATGCGCTGACGTGATGATATCGTTCTTGAGGGGTGGTTTGTGAGTCGG
GTACGTTATTGACGGGTCGAGTTTCACCATTTGGTCCTCAAATTTGCATT
TTTTCATTTTTTTTCATATTAAGATTGAAGTCGCGCTTTGGCGAGGGGGG
TCATTTGAGTCGATTTTTCTCTATTTTTGAGCCGATTTGGAAAGCAGCCA
GGCAAAATATATATTTCACCCTTCGGGGATGCGTGAGCGCATGCCATTCA
TGACGTTTTAAATTGAGGTTTGAAGCCGATTTGCGGATCGGTGCTCGTTA
AACATTTTACCTACCGCAGGCTTATTCCTTGCGCGGTTAGGGCCAAGCGG
ACGTAATCCAATCCAACTCAAACTCAAAACTAAATAACTCTGATCCATTA
AAGGAAATGCAGACACTCAGTAATCTTCGAAGAGTGGAAGCAGCGGAAAG
GGTTTTGCCTTAGCCTTCCGGGGGTTAAAAAAAAACAAAAAAAACTCAAA
ACTAACCCTAGTATCAGTCCTGTCACCGTCGCTGTGCCGATTGGAATCCG
GTAGTACCTAAGGCTGGCAAAACGCCGCGCCGCTGCGCGGCGGGCAATAA
GCAGGTATGAAATTTGGCGGCGGGAATGTCAACCGCACCACAGCGAAAGA
GAGTAGTACTCAAACATATAAAATTGAGGATGAACTGGGGTAAACTCTGC
TACTATGCTGATCTCTGGTGCGTGCCTGTTGGCAGGACCGCTGCGATGGA
CGAAGCGGCTAAGAATGGGCACATAGATGTGGTGAAGTTTCTACACTCAA
ATCGACAAGAAGGCTGCACCGGCGGCGCCATGGACATGGCCTCTAGAAAT
GGCCATCTTGAGGTCAGAATGTAATTCGATGTTCACCCCCATGTAGGATC
ATCGGAGCGAAGTGGGGTCGCTGGAGCCATCGTATATGAGTCGTTCAGAC
TACGTTTTTTGCTCTTTGCTTGGCGCAGCCAATTGATGTAGCAATACAGT
CACCGATACATATGTAATATATTGATGCAAGCGAAATGAGTCGGCCGCGC
GAAGCGCCAAGAGAACGCTTGACCGTGAGTCAAACGCCTCCCCCCTCCCC
CCTCTCCCCTCCCCTAAACGCGATTAGCATGTATTTTTGCTGGCACATGC
GAGGCGCAATCAGCGCTTTTATGTCTGTTTCAACCTTTTTTTTTTTTGTC
CTCAAGGGAGCGGCGGAAACTTTACCAAACACTTTCCCCGAAACCGGCTT
CGTGTGTCAGTTACCCACAGACCTGACTAGTCCACCTTGTGGCCGCCAGG
TGGGCTCTCACCCACTAAAAGCCCCTTTGGTGATTTCCTCGACTTGGTGT
AGGACAAGCACTGCTCTACTCGAATGAGCTTCGGCCTTAGATTCAATTCG
TTGCTTATATGTAGGGTACAGACCCGGTGTAGCTACGCATATTGGGGATT
AGATGCCGGATAAGTAATGATCAACCTGATTTTTCCTCGGATATGAAGGT
CACGGTACCATTGTTGATGGAAAATAACAGAGGCGGCGAGGGGCAGAAAC
AATATTTTTTTGAGAATAATTGATGCGCACGCAAGACAAAGCCGAACCAT
TCACTCGACATTTTGTTGCAAACTCAGAGTTCCCGGACTGTCTTGGACTT
TCGTCGTGTGTTCACTGGACATGCACGATATTTTTCGGAATGTTGGTTGG
TTTTGACTGGACATTCATGACAACGTTCTCAGATGCAACTTCTATTTTTG
ACTTAGTTTGTTGATGGTGTTCTTGGCTGCCACCACGTTATTTTGTTCTC
GTGCCGATTTCTGTTCGTCTCTGCGACACAATGCGATGCGATCGATGCGC
AGATGTTGAAATTCTTGCACGAAAATCGTAGCGAGGGGTGCAGCACGCTA
GCGGTCGACTTCGCAGCTCATAACGGGCATACAGAGGTGGGTAATGGGTT
GATTAGGAGGCGTTCTAAACGTTCTGATGATATGTGGGTCTGAGTAAGTG
GGCTGTCGAATGTTGTGCAAAAAAACAAGTACCTGAGAAAAAAAGATTGC
CAGCAAGTGCTCCAGTATGCTTTGTGTTTCTCTTTGTTTTCGCTTGATTT
AGATGTTTTTTTTAATCTCGAAGCATCGCGTTGGGTGGGTGGAAACTCGA
CGCGTTCTTTGAGCGCTATATTCGGCGAATATGCATCAATACGTCGTATA
TGCGTTGTGTTGGCTTCAGTTACCAAACCCTTGCGTTTTACCACTGTCCG
GCCGCTACTATACTGTACACTCTCAGACAGCTATTACCGCACCGTTTAAT
ACCGCCCATCTACTGAGGTCGGTCTCTGCTGTACCGTACAGTATCGTGGC
TGGTCGTTACCGTACCGTTCATTACCACGGTGTCACTGCGATATGCCAAT
ATCGGCCGTCCACGGTAAATGGCTGACTCATTTCACAGCTATTACCTTGT
TTTTCACATCGCTTTTCTGATACCGTGCCTTTTCGTCAATATCCACAAAA
AAACAGATATTTTCTTTTTCAAGTTATTTTTTTTTCATCGATTTTTTCTC
ATCAATTTATTTTTAATGCGGGGATAGTAACCCGCCTTGGATTATTTCGG
AGAAATGGAGAAAAAAGAACTATCGGAATTTAATATTGTAGCATAAATCG
CGCTTGCTCATTTTCTATTTTTCTTTCAAACCTCGAGAAAAATTTCGTCT
TTTTTTCAAAACTCAACAGAAGAACGCTCTCAATCAGGAAGGCGGTACGA
AGTGGACACCATCCCCACAGGATTGTCGTTATCCTATGGTATCAGTAGGC
CTACTTTGGGGTAGCTCGCAGGGTATGTCTTCTTCTCATGCCAGTCGGAT
CGTTCATACCCGCAATCAGAGAAACGACTCTTTTCGTCAGCGTCGAGGAA
ATGGATAATCGTAGAGGTCACACGCTGCGTGGGGTGGGTGGTAATATATG
GCGGCACGAGCCAGATGTAAGCTTTTGCATCGTTTTTAGTCTTAATTCAA
CAGAGTGTTTACGCAACGCATAACGAATTCCTTTCGTGAATTTCGATCTG
GTCTTGTAAAAGCCAACAGTGAGGCAGCTCCTCGTCCAGGACCCCAGTCG
ACCTGCACCTATATCTCGTCACAAAACGACTTTCTTTTCACAACCAGTAA
TTTTTGGTATCTCTCACGAAACGTAGAAATTTCGAAATGTAGTCTTTCAT
AACGAGATAGACGTTGGTGTGCGTGAGCTGGGTCCGAAGGGGGTCTTCGA
CGAGCAGTTTCACTATTGCTGTGTACGGCCAAACCGAAATGTACGAAATG
ATTTCTTTTTGCGCAAGCACCCTAATATATACAGGCTGTGCCCAGAAAGA
CAGGTTAATAACAGTGGATGGACCGAACAACACGAATTAATGCGTTCTGC
ACCGCAACTTTGGGGTTCCCTGCAACCGTAAGAGCATCTCGGCGTGTACC
TCAAGCTCGGGTCGGTCAGTTGGATACTTTGTTATTTCACCCTCTAATAC
AGCAGCGATTGTACGCCCAGTTAGTGGCTACTATGGGGAAGTTTAGTACA
GAATTCAAGATATCTGCGTTTATGTGCCCGATCGTCCTGAACATTTATGC
GCGTTTCGCCGATATTACAACGAAAACAGTCGTACTTCGACTCCCAATTC
ATCGGCGCTCAAAAATTATGACCAGCGCAAAATTGGGGAAAAGATCAATA
TAATATATAGATTTTAGAAGCCAGTCCTATGGGCGTATTCAATGGGTCAT
TTTCATTCGAATTTTTAGAATTTTGATCTGAAAAATGAGGAGTTCAACAT
ATGGTGCAGACGAAGGCGTTGCCAGTTTTCTTTTTCATGTCCCGAAGATG
TTTTTCCATTGATTATTCGGCTATTATCTGATTTTCAAACTGAAGTGCCC
AAGTTGGACTCGCGGGGTATTTCCCATTCCGATTTCGAAAGTTGAGACCT
GAATATTTTTAGATGATCGTATCGTGAATACCCAGAATTTTATTGGTTTA
GTATTTTTTGTTTAGGAGATATGGGCGGATTTGTAAACCTAAAAAAATTA
AAGCTTCCATATCTCACGATAAAACAAGAACAAAAAAAACAAACCCGAAT
AAGACCATTGACGGTATTCACGATGCGATTATTAAAAAATTGCAGGTCTC
CGACTCTCAAAATTCGAGTGAGAATGCTTTTCTTGTCTTGGTGAGCCCAG
CCTATACGCGACATGGGGAAGTAGAGGGCATGGATGCCGGAAAATGTTTC
GTGTGCTACAAGGGTGACAGTAAAAAATGTTTGCCGTCACCCGAGCATAA
AAATATAATATATCTGTTGTCGTGTTCTTGCGATCCGTTGACATCCATTT
TCGTTGTAATGTTGGCAAGGTTTGGCACTCGATTTTGGAGAGATGCGAAG
TCACAACGAGATTTTTTTTTCGCCTTCGGCGGCGCTTCCAGTGAGCCCCC
CTGACCCACAGGGGGGCACCGTGGCGGCTTCGCAGCCGCTGTGCTTCGTG
CCAGTATACCTATATACTAATTGTTGGCGCAGGGTATACTGACTGTCGGC
GCAGCCAGTGTATCTTGTACTGATGGACGCTGCCAGTAAGTAGCCCTAAT
AAACGGTGATGGTGTGCAATTCCCCCCCCCCCCCCCCAAACACTCAGTAG
TCTTGTGCAAATTACAGACGTTTGATATGGTGACCTGTAGTCGAACTGCA
CGAATCCCCTCGGGCGTATGCCCAAAACGTTGCTCTCAACGCGACCGAAA
TGTGGTGTAGTCCGAGTACCATATTGGTTTATCACTGATCATCTTTCCTC
TGTTTGTCGCCCTGAACACCTGCTCGCTAAACGCGCCGGTTACAGGTAGT
CAAATGGATGTTCGAGAACAGACAAGAGGGGTGTACCCCCGCCGCGGCCG
AGGGTGCAGCCGGGCAGGGTCATGATGAGATCGTGCGGTACCTCAAAGGA
CACAAGCGGGGCCGTAGTGTGGACTACGCTGACGTTGGCTCAGCTATTGC
ACAAGTGCAAGCCCGGCGACCGTCGATGAAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12968:708..7191-

>mRNA_H-paniculata_contig12968.1860.1 ID=mRNA_H-paniculata_contig12968.1860.1|Name=mRNA_H-paniculata_contig12968.1860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig12968:708..7191- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGCGACGTGGCAGCGCAAAATGGGCATCTGGAACTGCTCATGAGCGG
TCAGGCCAAGGAATTCAGCTCAAGTGCAATGGACTTAGCCGCGGCGAACG
GTCACCTGGAGGTTGTGCAATGGCTTCATGCAAACCGTTCAGAAGGATGC
ACGACGGCGACGTGGCAGCGCAAAATGGGCATCTGGAACTGCTCATGAGC
GGTCAGGCCAAGGAATTCAGCTCAAGTGCAATGGACTTAGCCGCGGCGAA
CGGTCACCTGGAGGTTGTGCAATGGCTTCATGCAAACCGTTCAGAAGGAT
GCACGACCGCTGCGATGGACGAAGCGGCTAAGAATGGGCACATAGATGTG
GTGAAGTTTCTACACTCAAATCGACAAGAAGGCTGCACCGGCGGCGCCAT
GGACATGGCCTCTAGAAATGGCCATCTTGAGGACCGCTGCGATGGACGAA
GCGGCTAAGAATGGGCACATAGATGTGGTGAAGTTTCTACACTCAAATCG
ACAAGAAGGCTGCACCGGCGGCGCCATGGACATGGCCTCTAGAAATGGCC
ATCTTGAGATGTTGAAATTCTTGCACGAAAATCGTAGCGAGGGGTGCAGC
ACGCTAGCGGTCGACTTCGCAGCTCATAACGGGCATACAGAGATGTTGAA
ATTCTTGCACGAAAATCGTAGCGAGGGGTGCAGCACGCTAGCGGTCGACT
TCGCAGCTCATAACGGGCATACAGAGGTAGTCAAATGGATGTTCGAGAAC
AGACAAGAGGGGTGTACCCCCGCCGCGGCCGAGGGTGCAGCCGGGCAGGG
TCATGATGAGATCGTGCGGTACCTCAAAGGACACAAGCGGGGCCGTAGTG
TGGACTACGCTGACGTTGGCTCAGCTATTGCACAAGTGCAAGCCCGGCGA
CCGTCGATGAAATGAGTAGTCAAATGGATGTTCGAGAACAGACAAGAGGG
GTGTACCCCCGCCGCGGCCGAGGGTGCAGCCGGGCAGGGTCATGATGAGA
TCGTGCGGTACCTCAAAGGACACAAGCGGGGCCGTAGTGTGGACTACGCT
GACGTTGGCTCAGCTATTGCACAAGTGCAAGCCCGGCGACCGTCGATGAA
ATGA
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