mRNA_H-paniculata_contig12966.1859.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12966.1859.1
Unique NamemRNA_H-paniculata_contig12966.1859.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12966.1859.1 vs. uniprot
Match: D8LRQ5_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ5_ECTSI)

HSP 1 Score: 356 bits (914), Expect = 5.260e-111
Identity = 173/217 (79.72%), Postives = 191/217 (88.02%), Query Frame = 1 
Query:    1 QEPWALRAHPELGYLTAMALGTEKTWLVVGTSRGFVMLWDLRFQILARLWRHSSGGSVHKLATCSRLPPPDAALGPHVIVAAGRNEAAIWDLSKSGACKQCFRVVPSTDGPVPPQPRSRNQGSN---VMPPGADLPVLEEVSPPSHPKAPALSLGSQLSAVREFSDSAPQAAGEPTIRALVGRISRSERDSYLITGGTDRCIRYWDFQAASRCYLVS 642
            +EPWALRAHPELG+LT +ALGTEKTWLVVGTSRGFVMLWDLRFQ+LARLWRHSSGG +HKLATCSRLPPPDAA GPHVIVAAGRNEAAIWD+S  GACKQCFRVVP ++GP P      ++G +   ++  GA+LPVLEEVS PSHP APALSLG+QLSAVR+FS  APQ  G+P IRALVGRISRSERDSYLITGGTDRCIRYWDFQAASRCY+VS
Sbjct: 1151 EEPWALRAHPELGFLTVIALGTEKTWLVVGTSRGFVMLWDLRFQVLARLWRHSSGGPIHKLATCSRLPPPDAAPGPHVIVAAGRNEAAIWDVSTGGACKQCFRVVPPSEGPPPSASSRSSRGQDPATIL--GAELPVLEEVSLPSHPNAPALSLGAQLSAVRDFSSGAPQTGGDPAIRALVGRISRSERDSYLITGGTDRCIRYWDFQAASRCYMVS 1365
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BLAST of mRNA_H-paniculata_contig12966.1859.1 vs. uniprot
Match: A0A835YVX7_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVX7_9STRA)

HSP 1 Score: 188 bits (477), Expect = 2.010e-54
Identity = 103/230 (44.78%), Postives = 141/230 (61.30%), Query Frame = 1 
Query:    1 QEPWALRAHPELGYLTAMALGTEKTWLVVGTSRGFVMLWDLRFQILARLWRHSSGGSVHKLATCSRLP---------PPDAALGPHVIVAAGRNEAAIWDLSKSGACKQ--CFRVVPST-DGPVPPQPRSRNQGSNVMPPGADLPVLEEVSPPSHPKAPALSLGSQLSAVREFSD----SAPQAAGEPTIRALVGRISRSERDSYLITGGTDRCIRYWDFQAASRCYLVS 642
            +EPW L A PELG LTA+ALG ++ W+  GT+RG++ +WD+R  +LARLWRHS+ G +H+L+TC+RLP         P     GPHV +AAG +E A+WDL  +G  +   CFRV P+  DG   P                 +P L+ ++ P+HP+AP L + +  +  R   +    SA +  G  +IRA+VGRIS+   +SYLITGG+DR IRYWDFQ  SRCY VS
Sbjct:  148 REPWRLAAPPELGALTAVALGPDRHWVCAGTARGYLAMWDVRLPLLARLWRHSARGPIHRLSTCARLPGDTNAAAPTPEAGGAGPHVFIAAGDDETAVWDLRGAGTLRPRYCFRVAPAGFDGQQAP-----------------VPSLDSIALPAHPRAPLLPMHAAFADARLGGNAGAVSAERLRGTSSIRAIVGRISQ-HGNSYLITGGSDRHIRYWDFQVPSRCYTVS 359
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BLAST of mRNA_H-paniculata_contig12966.1859.1 vs. uniprot
Match: A0A7S2WQI5_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQI5_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.560e-48
Identity = 96/218 (44.04%), Postives = 128/218 (58.72%), Query Frame = 1 
Query:    1 QEPWALRAHPELGYLTAMALGT--EKTWLVVGTSRGFVMLWDLRFQILARLWRHSSGGSVHKLATCSRLPPP--DAALGPHVIVAAGRNEAAIWDLSKSGACKQCFRVVPSTDGPVPPQPRSRNQGSNVMPPGADLPVLEEVSPPSHPKAPALSLGSQLSAVREFSDSAPQAAGEPTIRALVGRISRSERDSYLITGGTDRCIRYWDFQAASRCYLVS 642
            +E W+L   PELG+ T +A+G+  +K W+  GTSRGFV LWDLRFQ++A+LWRHSS   + +LATC+RLP     +   P   VAAG NE A+W+L+    C++CFR +      V P                 LP LE VS P+HP  P  S   QL  +     SA    G  T+RA++GRIS S  +SY+ITG +DR IR+WDF   S+C+ VS
Sbjct:  218 REAWSLDLPPELGFQTVLAVGSGSDKQWMCAGTSRGFVALWDLRFQLMAKLWRHSSKAPIQRLATCARLPEDGDSSPAQPLAFVAAGGNEVAVWNLATGAQCRRCFRCLSPQHHGVAPDA---------------LPTLEPVSLPAHPAVPIFSASQQLDML---GSSAAATNGPHTVRAIMGRIS-SHGNSYVITGSSDRHIRFWDFTTPSKCFTVS 416
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BLAST of mRNA_H-paniculata_contig12966.1859.1 vs. uniprot
Match: A0A7S3JYX0_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYX0_9STRA)

HSP 1 Score: 172 bits (437), Expect = 5.290e-46
Identity = 101/222 (45.50%), Postives = 136/222 (61.26%), Query Frame = 1 
Query:   10 WALRAHPELGYLTAMALGTEKTWLVVGTSRGFVMLWDLRFQ-ILARLWRHSSGGSVHKLATCSRLP--PPDAALGPHVIVAAGRNEAAIWDLSKSGACKQCFRVVPSTDGPVPPQPRSRNQGSNVMPPGAD----LPVLEEVSPPSHPKAPALSLGSQLSAVREFSDSAP--QAAGE--PTIRALVGRISRSERDSYLITGGTDRCIRYWDFQAASRCYLVS 642
            W L A  ELG LTA+ALG ++ W   GTSRGF+ LWD+R+     +LWRHS+   +H+LATC+RLP    DA   P   VAAG N+ A+WDL+  GAC+QCFR V ++      Q    ++   V P  A     LP LE +S  +HP+  A SL ++   + +     P  Q AGE  PT+RA++GRIS +  +SYL+TGGTD  +RYWDF + SRC+ VS
Sbjct: 1404 WKLEAPAELGLLTAVALGNDRNWCCAGTSRGFLALWDVRYGGSFVKLWRHSTKSCIHRLATCARLPLSSADAPPAPLAFVAAGANQVAVWDLANGGACRQCFRAVRTSK-----QDYDIHKTQLVDPALAANNWALPTLEPISIAAHPQRRAASLCAKTGYLDDLMRPPPLSQLAGEDAPTVRAIMGRIS-AHGNSYLLTGGTDCHVRYWDFLSPSRCFTVS 1619
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BLAST of mRNA_H-paniculata_contig12966.1859.1 vs. uniprot
Match: A0A7S2HH45_9STRA (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HH45_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.340e-43
Identity = 93/222 (41.89%), Postives = 135/222 (60.81%), Query Frame = 1 
Query:    4 EPWALRAHPELGYLTAMALGTEKTWLVVGTSRGFVMLWDLRFQILARLWRHSSGGSVHKLATC-SRLPPPDAALG-------PHVIVAAGRNEAAIWDLSKSGACKQCFRVVPSTDGPVPPQPRSRNQGSNVMPPGAD-LPVLEEVSPPSHPKAPALSLGSQLSAVREFSDSAPQAAGEPTIRALVGRISRSERDSYLITGGTDRCIRYWDFQAASRCYLVS 642
            EP++L   PELGYLT+MA+G ++ WLV GT+RG++ LWD+RFQ++ +LW+HSS   V +LAT  ++LP    A G       P + +  G NEA+++D+S +G+C+ CFRV+          P       + +P     LP LE+V  P+ P+   LS GS LS +     + P    EP++ A+ GR+ R+   +YLITGG+DR IRYW F  AS+CY VS
Sbjct:  234 EPFSLSIRPELGYLTSMAVGDDRNWLVAGTNRGYLALWDVRFQMMVKLWQHSSAAPVSRLATSFTQLPVDKDAPGNPTDDARPLIFMGCGPNEASVFDVS-NGSCRHCFRVL---------DPELSYVDQSSLPLSCSTLPTLEDVKIPTSPRDRILSAGSALSGIVSERLTPP----EPSVYAMSGRVGRTG-SNYLITGGSDRAIRYWSFNDASKCYNVS 440
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BLAST of mRNA_H-paniculata_contig12966.1859.1 vs. uniprot
Match: A0A7S1YUM8_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YUM8_9STRA)

HSP 1 Score: 155 bits (392), Expect = 5.630e-40
Identity = 87/214 (40.65%), Postives = 124/214 (57.94%), Query Frame = 1 
Query:    4 EPWALRAHPELGYLTAMALGTEKTWLVVGTSRGFVMLWDLRFQILARLWRHSSGGSVHKLATCSRLPPPDAALGPHVIVAAGRNEAAIWDLSKSGACKQCFRVVPSTDGPVPPQPRSRNQGSNVMPPGAD-LPVLEEVSPPSHPKAPALSLGSQLSAVREFSDSAPQAAGEPTIRALVGRISRSERDSYLITGGTDRCIRYWDFQAASRCYLVS 642
            EP+ L   PELGYLT+MA+G ++ WLV GT+RG++ LWD+RFQ++ +LWRHSSG  V +LAT     P      P + +  G NEA+++D+S  G+C+QCFRV+          P       + +P     LP L+ V  PS  +   L+ G+ +S +            EP+I  L GR+  S ++ YLITGG+DR IRYW F   ++CY VS
Sbjct: 1102 EPFCLNIKPELGYLTSMAVGDDRNWLVAGTNRGYLALWDVRFQMMVQLWRHSSGAPVSRLATSFAQLPSTGEARPLIFMGCGPNEASVFDVS-DGSCQQCFRVL---------DPELSYVDQSSLPLSCSTLPALQNVRIPSISQDRILAAGTAISGITN----GRLTPTEPSIYGLSGRVGTSGQN-YLITGGSDRTIRYWSFSDVAKCYNVS 1300
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BLAST of mRNA_H-paniculata_contig12966.1859.1 vs. uniprot
Match: A0A7S3HPN9_9STRA (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPN9_9STRA)

HSP 1 Score: 150 bits (380), Expect = 8.890e-39
Identity = 87/230 (37.83%), Postives = 127/230 (55.22%), Query Frame = 1 
Query:    1 QEPWALRAHPELGYLTAMALGTEKTWLVVGTSRGFVMLWDLRFQILARLWRHSSGGSVHKLATCSRLPPPDAAL------------GPHVIVAAGRNEAAIWDLSKSGACKQCFRVVP--STDGPVPPQPRSRNQGSNVMPPGADLPVLEEVSPPSHPKAPALSLGSQLSAVREFSDSAPQAAG--EPTIRALVGRISRSERDSYLITGGTDRCIRYWDFQAASRCYLVS 642
            +E   L   PELGY T+M +  ++ W+ +GTS+GFV L+D+R+ + ++LWRHSS  ++H+LA C     P AA             G  + VAAG NEAA+W + + G C +CFR V   ++ GPV P                 LP LEE++ P  P AP             F DS    +   + +++A++GRIS+S + SYL+T GTDR IR+WDF A +RC+ +S
Sbjct:  366 KEAMHLPMRPELGYATSMTISPDRNWICMGTSKGFVSLFDIRYNVPSKLWRHSSHSAIHRLACCKA---PKAASNAGASAGMPQSEGAFLFVAAGNNEAAVWGIPEGGECCKCFRSVSLDASRGPVAP-----------------LPWLEEINLPRRPNAPI-----------RFQDSVQTYSNPRDDSVKAIIGRISQSNQ-SYLVTAGTDRSIRFWDFAAPNRCFTIS 563
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BLAST of mRNA_H-paniculata_contig12966.1859.1 vs. uniprot
Match: A0A7S4D9X1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9X1_HETAK)

HSP 1 Score: 141 bits (356), Expect = 2.670e-38
Identity = 68/154 (44.16%), Postives = 96/154 (62.34%), Query Frame = 1 
Query:    1 QEPWALRAHPELGYLTAMALGTEKTWLVVGTSRGFVMLWDLRFQILARLWRHSSGGSVHKLATCSRLPPPDAALG----PHVIVAAGRNEAAIWDLSKSGACKQCFRVVPSTDGPVPPQPRSRN---QGSNVMPPG----ADLPVLEEVSPPSH 429
            +E + ++  PE GY+T+MA+GT+K WL+VGT+RG+V++WD+RF +L++ WRHSS G +H+LA C+RLP     L     P V +AAG NEAA WD++  G C+QCFRV+P   GP      +R    +   + PPG       P L    PP H
Sbjct:   65 REAFCMKVEPEFGYITSMAIGTDKNWLIVGTNRGYVLIWDMRFHVLSKAWRHSSYGPIHRLAPCARLPFDVIQLANKPLPRVFIAAGANEAAAWDVAAGGTCRQCFRVLPLPRGPADAAVDTRLPTLEDVRLAPPGPAGAGPTPALPLDFPPDH 218
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BLAST of mRNA_H-paniculata_contig12966.1859.1 vs. uniprot
Match: A0A7S1BKV4_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKV4_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.490e-37
Identity = 87/229 (37.99%), Postives = 124/229 (54.15%), Query Frame = 1 
Query:    4 EPWALRAHPELGYLTAMALGTEKTWLVVGTSRGFVMLWDLRFQILARLWRHSSGGSVHKLATC-SRLPPP---DAALGPHVIVAAGRNEAAIWDLSKSGACKQCFRVVPSTDGPVPPQPRSRNQGSNVMPPGADLPVLEEVSPPSHPKAPALSLGS-----------QLSAVRE-FSDSAPQAAGEPTIRALVGRISRSERDSYLITGGTDRCIRYWDFQAASRCYLVS 642
            EP+ ++  PELGY+T +A G ++ W V GTS G++ LWD+RFQ+L +LW+H S   V +LAT  +RLP     D +  P++    G NEA+I+DL+  GAC+QCFR +              N          DLP  ++    S P    + LG+               VR  +S ++ +A     ++ L+GRIS     SYLITGG+DRCIRYWDFQ   +CY +S
Sbjct: 1413 EPFKMKLRPELGYITTLACGNDRNWCVCGTSLGYIALWDIRFQLLLKLWKHESNLPVSRLATSFTRLPQDNNTDTSHKPYIFAGCGMNEASIFDLT-DGACRQCFRTI--------------NDAQYYFRDQKDLPDSQK----SIPSLRTVELGAGRHGHDCRMLHASEVVRNIYSQNSTRATLGSGVKGLMGRISTDGGPSYLITGGSDRCIRYWDFQYPEKCYTIS 1622
[Close]
BLAST of mRNA_H-paniculata_contig12966.1859.1 vs. uniprot
Match: A0A4D9CUX4_9STRA (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUX4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.290e-36
Identity = 92/239 (38.49%), Postives = 126/239 (52.72%), Query Frame = 1 
Query:    1 QEPWALRAHPELGYLTAMALGTEK-TWLVVGTSRGFVMLWDLRFQILARLWRHSSGGSVHKLATCSRLPPPD------------------AALG-PHVIVAAGRNEAAIWDLSKSGACKQCFRV-----VPSTDGPVPPQPRSRNQGSNVMPPGADLPVLEEVSPPSHPKAPALSLGSQLSAVREFSDSAPQAAGEPTIRALVGRISRSERDSYLITGGTDRCIRYWDFQAASRCYLVS 642
            +E W L+A  ELG+LTAM LGT++  WLV GT+RG+++L+DLRF +L ++WRHSS G +++LA  +RLP                     A +G P + VAAG NE  +WDL K G C+QCFR      V   +G    +   R +G      G +  V E +           +   Q  A+R  S     A   P +RA++GRIS +   SYLITG TD  IR WDF + + C  VS
Sbjct:  156 REAWVLKAPRELGFLTAMTLGTDRHAWLVCGTNRGYLLLYDLRFLLLVKVWRHSSHGPIYRLAAATRLPAARGRAEGGGERYQVQQSTSLAPMGRPLLFVAAGANEVGVWDLEKGGKCEQCFRAEMREEVRRKEGGTEGRRGQRVRGREGN--GENTGVSESL---------VRNRRGQSEALRSLSMHHSTA---PAVRAIMGRISTNTATSYLITGSTDHHIRSWDFASPADCLTVS 380
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12966.1859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ5_ECTSI5.260e-11179.72Non-specific serine/threonine protein kinase n=1 T... [more]
A0A835YVX7_9STRA2.010e-5444.78Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S2WQI5_9STRA2.560e-4844.04Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S3JYX0_9STRA5.290e-4645.50Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S2HH45_9STRA1.340e-4341.89Non-specific serine/threonine protein kinase (Frag... [more]
A0A7S1YUM8_9STRA5.630e-4040.65Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S3HPN9_9STRA8.890e-3937.83Non-specific serine/threonine protein kinase (Frag... [more]
A0A7S4D9X1_HETAK2.670e-3844.16Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1BKV4_9STRA1.490e-3737.99Non-specific serine/threonine protein kinase n=1 T... [more]
A0A4D9CUX4_9STRA1.290e-3638.49Non-specific serine/threonine protein kinase (Frag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12966contigH-paniculata_contig12966:663..6794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.5
Seed ortholog evalue4.5e-96
Seed eggNOG ortholog2880.D8LRQ5
KEGG koko:K08333
KEGG Pathwayko04136,ko04138,ko04140,ko04371,map04136,map04138,map04140,map04371
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005768,GO:0005770,GO:0005942,GO:0006464,GO:0006468,GO:0006605,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019898,GO:0030242,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034271,GO:0034272,GO:0034613,GO:0035032,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0061695,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071561,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098796,GO:0140096,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG1240@1,KOG1240@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Exons5
Model size642
Cds size642
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12966.1859.1prot_H-paniculata_contig12966.1859.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12966 663..6794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.7272363-CDS-H-paniculata_contig12966:662..7941622929022.7272363-CDS-H-paniculata_contig12966:662..794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12966 663..794 +
1691480703.0553885-CDS-H-paniculata_contig12966:662..7941691480703.0553885-CDS-H-paniculata_contig12966:662..794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12966 663..794 +
1622929022.7378428-CDS-H-paniculata_contig12966:1969..21371622929022.7378428-CDS-H-paniculata_contig12966:1969..2137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12966 1970..2137 +
1691480703.073932-CDS-H-paniculata_contig12966:1969..21371691480703.073932-CDS-H-paniculata_contig12966:1969..2137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12966 1970..2137 +
1622929022.7504723-CDS-H-paniculata_contig12966:4794..49051622929022.7504723-CDS-H-paniculata_contig12966:4794..4905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12966 4795..4905 +
1691480703.0847936-CDS-H-paniculata_contig12966:4794..49051691480703.0847936-CDS-H-paniculata_contig12966:4794..4905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12966 4795..4905 +
1622929022.7688196-CDS-H-paniculata_contig12966:5846..59741622929022.7688196-CDS-H-paniculata_contig12966:5846..5974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12966 5847..5974 +
1691480703.094512-CDS-H-paniculata_contig12966:5846..59741691480703.094512-CDS-H-paniculata_contig12966:5846..5974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12966 5847..5974 +
1622929022.7803097-CDS-H-paniculata_contig12966:6691..67941622929022.7803097-CDS-H-paniculata_contig12966:6691..6794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12966 6692..6794 +
1691480703.1030843-CDS-H-paniculata_contig12966:6691..67941691480703.1030843-CDS-H-paniculata_contig12966:6691..6794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12966 6692..6794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12966.1859.1

>prot_H-paniculata_contig12966.1859.1 ID=prot_H-paniculata_contig12966.1859.1|Name=mRNA_H-paniculata_contig12966.1859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=214bp
QEPWALRAHPELGYLTAMALGTEKTWLVVGTSRGFVMLWDLRFQILARLW
RHSSGGSVHKLATCSRLPPPDAALGPHVIVAAGRNEAAIWDLSKSGACKQ
CFRVVPSTDGPVPPQPRSRNQGSNVMPPGADLPVLEEVSPPSHPKAPALS
LGSQLSAVREFSDSAPQAAGEPTIRALVGRISRSERDSYLITGGTDRCIR
YWDFQAASRCYLVS
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mRNA from alignment at H-paniculata_contig12966:663..6794+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12966.1859.1 ID=mRNA_H-paniculata_contig12966.1859.1|Name=mRNA_H-paniculata_contig12966.1859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6132bp|location=Sequence derived from alignment at H-paniculata_contig12966:663..6794+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAACCTTGGGCATTGCGAGCTCACCCGGAGCTTGGGTATCTAACAGC
GATGGCACTAGGAACGGAGAAGACGTGGCTGGTCGTGGGCACTAGCAGGG
GTTTCGTAATGCTGTGGGATTTGCGATTTCAGGTCGGTGGGATGTTATTA
ACTAAATGGCTCATTCTGGAAAAGTTGAAAAAAAATAAAAAAATCCCTCC
TTGATCGAGCGATTTGGTGCTGTGTCATGTTCCAGATGGAATTTCAAGGG
AGAAAGGTGTCAGCGCGATGCACCTGCTGCCACAGGCGTGTTATGTGGTG
GGTGGTTTGTTTGTCCTACGTAAAGTGTTGCCTCGTCGAGAAACGTTTGA
ATGATTGGACTCGTGTGATGTAGAGTAACAAGATGACCCCGCCCCACGTC
AGGAAAGTAGTGGATAATGACCAGAGACTACTCGGTTGGCAGTGTTATAC
TCGGGCGGTGGGGGATATTTTCCACAGTACGATGTTTGTATGTTTAACTC
GTTTTTTAAGTTCGTCCCCAGACATGTACAGCATGAGTATCAAATGGTCC
CCTCGTCTGGAAGAGGGCAACAGCCATTACCAGAGCTATTAAGTACAATT
CCACCTCCCAGCTTGTTTGTTAGGGACGCCTGAACTCGAATAAAGAGCGT
TTGCTAGCCGCGAAGATGTGTGATCGACTGTAAAAAATTAGAAGATGTGT
GGCAAACATTGAAGTAACGCCACACCTTGATGTAGTCTTGACGATCATTT
CCTTTGATATTTAGGTTTCAGGGATTAGTCATGTTCCAAAAGATGTTGCA
CACCTGGCCAGTAATTGAAGGCAAATCACGCTACATACGAGCATTTTGTC
AAGTTACAAATAGTCTTTTTTTCCCGATCAGCCCATTTAATTGTATTTAA
AAAAAATAGTTCAATGTTGCGAAGACTTCGTTTTCCTGATTCTTATAAAG
GTAGTGGAGTCCTTCATAAAGACGAAGTAATAACAACAAAAGAAGGTAAA
AAAACATACTGCGTAGGTCTATAATTTAAAAATATGAAAAGAAAAATAAA
TAATTTTGTTTTACATAAAAGGTTATTTAGGTCCATTTTTTTCTTTTTTG
AAGTGAAAATTCATTATACCCCTTTATCGTTGGTGTTAGGGATAATTATT
ATTTAATTAATTGTCTTCACCCTTTAAAGTCGGATTTAACCGTGTTAGAA
GATTTAATAAAAAAGAATATGCACAGGTTGACATCTAGCCCCCCATGAGT
GATGTCCGTTATTAGTCCCCACCGCCGCTGCCACACGCCAATGGGTTACT
ACCTCAGATCTTAGCGCGGCTGTGGAGACATTCCTCTGGTGGCTCTGTAC
ACAAGTTGGCCACCTGCAGTCGTCTTCCTCCGCCGGATGCGGCGTTGGGT
CCTCACGTTATCGTGGCGGCGGGGAGGAACGAGGCAGCTATATGGGACTT
GTCCAAGAGCGGAGCGTGTAAGCAGGTAGGCAATGCTTTGATGGTATGGT
ATGGTATGGTATGGTATGGTATAGGTATGGTGTGTTCTTGATTGAAATTT
AGTGTACTCACGAGAGCTTGCAAGTACCTGTGTTTTTACATAAGGTAGCT
GTTGAGAAATGGCGTGGCAGGTGGGTGGCAGCGTTGAGTGTTGTTGTGCA
CCGAGTGTTGAGGTGACGTCGTACGCACCTGTTCTTGGTGTGTGGTATAC
GGTCGCCAGCTTCTCACTTATTGTGAAGACTGAAAGACTGTGTGTGGGGT
GGAAGATGTTCAGCAGTAGGTATTATTCCCAGTACAGTATAATACTTGGT
ATACTCTTTACTGGGTGGCGTGTCCTGCACTCGGTTTGCTTCAGTACCGT
CAATACCATGAGCCCAAAATATTCGCTGTTTTTTGCAGTACCGTCAGTAA
CACTATTACGGAGGAACATAATAATCAGGAGCATTTTTGTTTTTTTGTTT
TTTTGTTTTTCTTCGGAAACTGAATTTTGTTTTTCTCCGTTGATCTACAG
ATTTTCGCTTCTAGCTGAAAACAAAAACACACTCTAAAAACACTTGCACA
GACAGGCATGCAAATGCAGCAACCGATTGGTGCATATCGTATTGCATTAG
TTACACCTCAAAATGTCAATTTTCTAATTTGCTCCTGATTATTATGTTCC
TCCGTAATAGCAGATGTACCCCAAAATATGAAGTGGGATTCTGATGACGT
CATCAGTATAGTGTGGGCCCACCGAAAACACGGAAAATGTTCCACAGGCC
AAATTTCACCATCCAAAATATAATTACTACAAACGTGGGATTGCCTCCAA
CCGTGTAAGCACCACGGAGTGCGCCGCGCGCTCTGAATGGCCATCCGGGC
ACTTTTAGGGTTTCAAAGTATATGGCGATTCGAAATATACACTATTTACT
AGCGGTTATTTTCCAAATGTGTTGGTGCAAAAGTCAAGTATATTACATTT
GTGCCTGATTCATTTCGTGCCCAGTTGTTGTTCTCAAGATTGGTGTGTCT
ATTGATTGCTCACACCACGACGAAAACTGTGATATCGGTTTGGGATCCCA
ACTCGCCACCGTTCCAATGTTGTGGCTGGAGCAAAATTGGGGTATAATAC
CTACGTTTTTTGTTTGGAATTAGGACGTACATAACACTTGTACAACACGG
GTATATCTCGCATTTGGTTTTTTGGAGGTCGAACATTATTTTTTTTTGTT
TTCGGAGGCCTTCAAAGATTATAATATTTGGTCATGAGGGATAGAGGTAG
CATGTTTGACATTATGCTGTAGGTTGGTCTCTTCTTGGAGGATTCAAATG
ATTGGTGGCGCGGATGAATCGAGCGCGTAGAGGCATCGCGACAAATGAAG
CACAAGTAAGGGTGATACAAATGAGATCTCAAGTTATTGCCCAAATAATT
GTTCCGAATTTCTACGTGCAGTTGCGGCACTCAAAAGCCCGTGTTATTCT
ACTTTCCAAGGCCTGCGAATTAGAAAGTTTAGGAATTTATGATATGTTTT
TGCTTTCTGTTCTCAGGGTTGTTGGAAGAAGGTTCATTTTTCACGTTGTT
TTGATGCTCAGGAGCCAGTCCTGAGATATTTTCCGTTCTGCCCCCAAAGA
AACGCGTTTGGTAGTCTGCTAATTTTGCGTTATTTGCCCTGAATGATGAT
GGTGATGATGGTGGTGGTGGTGTGTGCACCCGCCGAAGGTAAAAGAAAGA
TGGCCAGAGGGCTGACACCTTCATCGCTTTAAGGTAAGAACTATTCCGTT
CTCTCGTTGGCTTCGTATGCCTCTCACAGCTACAGCAAGTTTCCAAGCCT
GTCCTTTCCTGAATAAAATCCCGACGATTTCATATTTTCGGGTATTTCAT
ACCCACTAACTGTGTTCTACCGCAGTACTATAGTATTACAACATTGTCAC
TTTAGAGTATGACCACGGCTAGTACTACGGCCGGGCTGTCATACTACAGT
TTTTTTTGCCCCGATAATGATTCGTTTTGCAGAATTTACATGGTTATAGA
ATAAAAAAATTATTCCAGAATGACCTTCACCTTTACCGAGTAGATAATGA
CAGAGGACACCTCGCTTTCTGTCGGCGATGCACTGGCTTTTCTCGTGGCC
ATATGTACAATGTAAAGGGACAGCAGCCGTATAGTCAGCGTTGAAAAATG
GCGTCTTGGTTTATTACATATCATACAGTATGGACCCGATGATACAAAAC
TCTTTTATCGGGTGAGGCTCGAAGCTTTACTTTGGCGCGAATCGCGAACA
GCACTGTTTCTCACTTTTATGTAGGAATTAGTGTGAGGACACATATTGAT
TCCAATTTCTTGAACAGATTCTCATGCTTCAATGGAAATTGAGCCTTAAC
TTGTTTGGTAAATTTATTGTCAGCGTGTCCGTACTGTACTCTATCCATGT
GGATCGCAGGCAGATCGTGATACTTCAGCGTGTGTGACTATTATATGTAG
CTGCCGCCGCCACTTCGCCACTGTACAATTGTATAGCTCTACCGCTGCAG
CCCGCCCTCAATGTTGCTGGTTGTAACTGGTGTGTTGGTATATCATGCGG
CCTCGCCGCACATGTGCGTCGTCATTCTCCATTTCATGCACGTTCTGTTC
TTCTTTTCTTTTTTACATATGTTCCGCTTCAGTGCTTTCGAGTCGTCCCA
TCGACGGACGGGCCCGTTCCTCCTCAGCCCCGAAGTCGGAATCAGGGGTC
CAATGTTATGCCGCCGGGCGCTGATTTGCCAGTTTTGGAAGAGGTGAGCG
AGTGAGTGTGTGAACTAGTAACCACCACGGACCTACGCCCAAACGGGTAG
GGTAGCTCGTGAACTGAGCATGACTGGGAGTCTAGTCAGTGGTCTTTTAG
TGGGTGCAACCCACCCCCACACTGCCTACTTAGTTCGGCCCAACCGAGGT
GGCGCCTACCCCGCAGAGGAATAAACACTCTGTTCTGTTAATGGAAATGT
AGAAATACTTTGGTAAAATACTCAAGTATGGAAGCATCGGTAAAGGTTTT
TGCCTCAGCCTTCCGGGGGTTAAAAAAACAAACAAAAAAAACTAGTAACC
CGACTGGCACGATGGTAGTTTTTCGCTTTATGGGCACAAGTACAGGTGGG
TTTAAGTCATCATTATTTTGTGTTCAAAACATGGAGCGTTTCGCAGAGAG
ATGGTTGTATACGGCGTTGTTTTCCCGGGTGAGCTGAGGCTAGGCCATCG
TTCACTGTAGAACGAGGAGAGTGGATGGGTATCCTGGTAATGCTGTTTCA
CTTGGAGTGCGCGCTGAAATCCCTTCGGATGCCGCACTGGTCAAAATATA
ATAGGGGCTGTGTACAATAGTTAGGTCTGATCAGCAAGTGTTTATGTCTA
GGTGTCGCCTGCTCGTCCCAGGCTCGTGCCTATAATGTTGGACGCGTCGC
TGCTTTTCATGAGGTATACACATAAGGCACACTGGTGAGGGACGGGGTAG
TTCGCGCGTTGTATTCAACGTTGAAATTTTTCGGTCATGTCACAGTAACC
TCGTCTCTAGTATCCTTCCCCCGCGTTCGTGCCGGCATCGGGAAAAAATA
GTAATTCCCAGTATCCAATAAATCTCAGCTGCCTCGCTTGTGCAGCATTA
GAAGCCACCCTCACAGTTGTGTGTGCTGCTTTCGGCTGGTCATTCTAATC
GTTCGCACACGCTATGGTCATTATTTTTTTACAGGTATCACCACCAAGCC
ACCCGAAGGCCCCGGCGTTATCGTTAGGATCCCAGCTGTCAGCAGTCCGG
GAATTCTCAGATAGTGCACCACAGGCCGCTGGGGAGCCCACCATTCGGGC
CCTGGTTGGGAGGTGATTGGCTAGTGTGCTAGCGTGCCAGTGCTTCTTAA
CCGTAGTCGATTAGTAGCTGTGCGATGTGCCCTTCCTAGCACTGACGTGT
ACCCAGTACGGAGCTACATTACACCGGGTATTTGCCCATGGTGAGCTTGC
TTGTTTGGTGCCCCCGTTAATCAGTAGCAACGAGTATGCCAGGCTTGGGC
GGAAGACTTGGCATTGGGCTTGTGCGGTCTGCTAAATAGGGGCACTTTTT
TTTGTTGATTTTTTTCACTGCTGCCATGATGGTACTATCAATTGCCTGAG
GATGTCGCCTCGTGGAGATTGGATGTAGTTTCGTCTGCGATAAGTCCGTG
GACTGGACAGCCCGCCGTTCATTTTCAACGGTTAGCCTTGTGCCCCTGAG
ACCTTCCTTGCTCTATTCCTAAGGGGGGTATAGTTAGGGTGTAAGTGTAA
GCAAACCATCTCGTACTCTAGTTCGTGTTGCGTGCGAAGTGTCGCTGTAG
CATGTTGCCGGACCACGATTGCCCACCACCGAAAATCGAAGATGTTGTAG
CCGCTGTGAGATTGGTGCGGACTAACGAAAAAAATGGTTGACTCGTCAGT
CAGCGGTGATACTATGTCTTGGAGGCCACCATAGATGGTATAATTGCCCA
AATATTCACCTGTAGGTATTTTGCCGACGATACGCTGCCCTAATTTCCTC
CATTTCTCCCCCGTCTTTGTTGGAATTAGGATATCTCGATCAGAGCGCGA
TTCTTACCTCATCACCGGGGGAACGGATCGTTGCATTCGATACTGGGACT
TCCAGGCGGCCTCTCGCTGTTACTTGGTGAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig12966:663..6794+

>mRNA_H-paniculata_contig12966.1859.1 ID=mRNA_H-paniculata_contig12966.1859.1|Name=mRNA_H-paniculata_contig12966.1859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at H-paniculata_contig12966:663..6794+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAACCTTGGGCATTGCGAGCTCACCCGGAGCTTGGGTATCTAACAGC
GATGGCACTAGGAACGGAGAAGACGTGGCTGGTCGTGGGCACTAGCAGGG
GTTTCGTAATGCTGTGGGATTTGCGATTTCAGCAGGAACCTTGGGCATTG
CGAGCTCACCCGGAGCTTGGGTATCTAACAGCGATGGCACTAGGAACGGA
GAAGACGTGGCTGGTCGTGGGCACTAGCAGGGGTTTCGTAATGCTGTGGG
ATTTGCGATTTCAGATCTTAGCGCGGCTGTGGAGACATTCCTCTGGTGGC
TCTGTACACAAGTTGGCCACCTGCAGTCGTCTTCCTCCGCCGGATGCGGC
GTTGGGTCCTCACGTTATCGTGGCGGCGGGGAGGAACGAGGCAGCTATAT
GGGACTTGTCCAAGAGCGGAGCGTGTAAGCAGATCTTAGCGCGGCTGTGG
AGACATTCCTCTGGTGGCTCTGTACACAAGTTGGCCACCTGCAGTCGTCT
TCCTCCGCCGGATGCGGCGTTGGGTCCTCACGTTATCGTGGCGGCGGGGA
GGAACGAGGCAGCTATATGGGACTTGTCCAAGAGCGGAGCGTGTAAGCAG
TGCTTTCGAGTCGTCCCATCGACGGACGGGCCCGTTCCTCCTCAGCCCCG
AAGTCGGAATCAGGGGTCCAATGTTATGCCGCCGGGCGCTGATTTGCCAG
TTTTGGAAGAGTGCTTTCGAGTCGTCCCATCGACGGACGGGCCCGTTCCT
CCTCAGCCCCGAAGTCGGAATCAGGGGTCCAATGTTATGCCGCCGGGCGC
TGATTTGCCAGTTTTGGAAGAGGTATCACCACCAAGCCACCCGAAGGCCC
CGGCGTTATCGTTAGGATCCCAGCTGTCAGCAGTCCGGGAATTCTCAGAT
AGTGCACCACAGGCCGCTGGGGAGCCCACCATTCGGGCCCTGGTTGGGAG
GTATCACCACCAAGCCACCCGAAGGCCCCGGCGTTATCGTTAGGATCCCA
GCTGTCAGCAGTCCGGGAATTCTCAGATAGTGCACCACAGGCCGCTGGGG
AGCCCACCATTCGGGCCCTGGTTGGGAGGATATCTCGATCAGAGCGCGAT
TCTTACCTCATCACCGGGGGAACGGATCGTTGCATTCGATACTGGGACTT
CCAGGCGGCCTCTCGCTGTTACTTGGTGAGTGATATCTCGATCAGAGCGC
GATTCTTACCTCATCACCGGGGGAACGGATCGTTGCATTCGATACTGGGA
CTTCCAGGCGGCCTCTCGCTGTTACTTGGTGAGT
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