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Homology
BLAST of mRNA_H-paniculata_contig12965.1857.1 vs. uniprot
Match: D8LBB8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBB8_ECTSI) HSP 1 Score: 424 bits (1090), Expect = 1.160e-135 Identity = 202/275 (73.45%), Postives = 226/275 (82.18%), Query Frame = 3
Query: 3 GRDSDVYVLTGLFDERTGMLPEGSFPRAVFGRSLRYLKSFAGRLDVHHVLLEAGIATGKDSAGIGEAWSGGGSQHPPERPGGARKVVAAPLRQGLGADKYFSRRHGRRDHNWQWNMDDSPWARSLMAKGRLALGVREEEADEFEEAGIIAFPGSVVKHKDSNKNGGYGKTIGTLVLRSPEQAFVCLQVQGKLLSKAIEAARERHIQLPPKFETKGRFKFAINELDAWGMVGGAARDEAEHAVVCGRSPIPRGEPGEGFVRLAFNMRWGWQEDPKV 827
GRD+DV+VLTGLFDE TG+LPE FP AVFG SLRY K G + H L EAG+ G S IGEAWSGGGS +PPERP GARKVVAAPLRQG GA+++FSR HGRRDHNWQW+M SPW+ LMAKGRLALGV EEEA+EFEEAGIIAFPG VVKHKDS KNGGYGKTIGTLVLRSPE AFVC+Q QG+ L +A+E A E ++LPP+ KGRFKFAINELDAW MVGG AR++AEHAVVCGR IP GEPGEGFVR+AFNMRWGWQ+D +V
Sbjct: 252 GRDADVFVLTGLFDELTGLLPENGFPYAVFGSSLRYFKGLIGSAEAKHALKEAGVTPGDRSGAIGEAWSGGGSMYPPERPAGARKVVAAPLRQGEGANRHFSRVHGRRDHNWQWDMLKSPWSLGLMAKGRLALGVSEEEANEFEEAGIIAFPGHVVKHKDSVKNGGYGKTIGTLVLRSPESAFVCVQGQGERLGRAVELAEELGVELPPRVAEKGRFKFAINELDAWAMVGGTARNDAEHAVVCGRKVIPAGEPGEGFVRVAFNMRWGWQDDRRV 526
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-27_004500.1 |
| Exons | 4 |
| Model size | 2655 |
| Cds size | 774 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12965.1857.1 >prot_H-paniculata_contig12965.1857.1 ID=prot_H-paniculata_contig12965.1857.1|Name=mRNA_H-paniculata_contig12965.1857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=258bp
MLPEGSFPRAVFGRSLRYLKSFAGRLDVHHVLLEAGIATGKDSAGIGEAW
SGGGSQHPPERPGGARKVVAAPLRQGLGADKYFSRRHGRRDHNWQWNMDD
SPWARSLMAKGRLALGVREEEADEFEEAGIIAFPGSVVKHKDSNKNGGYG
KTIGTLVLRSPEQAFVCLQVQGKLLSKAIEAARERHIQLPPKFETKGRFK
FAINELDAWGMVGGAARDEAEHAVVCGRSPIPRGEPGEGFVRLAFNMRWG
WQEDPKV* back to topmRNA from alignment at H-paniculata_contig12965:1042..4879+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig12965.1857.1 ID=mRNA_H-paniculata_contig12965.1857.1|Name=mRNA_H-paniculata_contig12965.1857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3838bp|location=Sequence derived from alignment at H-paniculata_contig12965:1042..4879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGGCGCGATTCTGACGTGTACGTGCTTACTGGCCTTTTCGACGAGCGG
ACGGGAATGCTGCCAGAGGGAAGCTTTCCGCGTGCAGTGTTCGGCCGTTC
TTTGAGGTACACTTTTTTATTTATCCTGCATTTTGTGTGATAAACGTGCG
CTACTGTTGTATGCATGACAGGTTGACAACGATGTGAGTCGGGATATGAA
GTCTTGGCGAAAGGGAACTCTGAGAAAGAGATCCTGAACATATGACGGGC
AGTTTTTTTGCTTTTTTTTTTTTTCCGAATGAAGTCGGCATCTTCTTTTG
TAATTTCCAATAGGTTCGAAATATGAAGTGTTGTGCTTTTCTTGGGTCCA
GTACAAAAAAATCCATACGAAATATGTGAAAAGTGTGTCACTTTGCTCGC
GAGGTTACGCTGACGGAACAATTAAATGGCGTGAAAATTACATGCACGGT
GGTTTCAGGTACCTGAAATCCTTCGCCGGGAGACTAGATGTACACCACGT
TTTGTTGGAGGCCGGGATCGCTACGGGGAAAGACAGCGCTGGTATTGGCG
AAGCATGGAGCGGGGGGGGCAGTCAGCACCCGCCTGAACGCCCGGGAGGT
GCGCGGAAAGTCGTTGCTGCCCCTCTACGACAAGGCCTCGGTGCTGACAA
GTACTTCTCTCGGCGCCACGGCCGGCGCGATCACAACTGGCAATGGAACA
TGGACGACAGTCCATGGGCTCGGAGTCTGATGGCCAAAGGTAAGCTCATG
TAAACGATCTACGATTTGCCCAGGGGGGCATATATGATGGAGATTTGGCT
TTTAGGCTATTTTTACGCTCATCATTCTGATGATGAGCGTAATTGCGTCT
TGGAGGGGCGGCGAACTGGAAGAAGGGAATCCATTGGCCTATATCTACTC
GTGGGATGGCCACATGTTTCTCTCTTCCGACGGCACATGTTGAAATTGAC
CGGGGTGATTGTTACCTGGAGTTTGCCCTCGCCTTCCCCCAAATCCATGC
TGCGTCTGCCCGAAGAAGAGCGTTCAATCAGTGGTCCAGTTTTTTGTGAT
CTAACGTTGGCCACCGCACTTCCCCGATCCCAAATGCGTGGGCGACTTGA
CTCCCTCAGGTCGTTTGGCGCTGGGAGTACGAGAGGAAGAGGCCGATGAG
TTCGAAGAGGCTGGGATTATCGCTTTTCCCGGTAGCGTGGTGAAACACAA
AGATTCCAACAAAAACGGGGGTTACGGCAAGACCATCGGCACGTTGGTAT
TGCGGTCACCGGAGCAAGCGTTTGTGTGTCTGCAGGTTCAGGGCAAACTA
CTCAGCAAAGCGATTGAGGCGGCGAGAGAGAGACATATACAATTGCCGCC
CAAGTTTGAGACGAAGGGAAGGTCAGTTGTTAGTGATGGAGGACGGCGCT
TTGTTTGTTCGGGGGGGGGGGGGGGGGCTGCTTGCTTGTGGGGATTAACT
CCCTAGCGGACCCTTCTCTGTTCCGTGCTCGTTGCGGACTAACGTGTTGC
CATCCAGCAATTTCGTTCGAACGGGAAACAAATAGATTGTTTTTCCAAAC
TGGACGTGATGGAGCTGTAGGTTATGTCTCACACGAGGTGCACGCGGCGT
GTCATGATATGAAGTCGTCCTTTAAAGTTTAAAATCGCTTTGGGCGGAGA
GGCTTTTGCTTTGACAGTTAATTCGTGGTATGCTGGGCTGTCTAGGCTTT
TACGGATTGTGCGGTATCCCCCCCGTAGATATTTCCCTGCAAGTCGACCA
GAGCAAAACTCGTAAGCTAAAGCTGCGTTTTCCACACCCTCCCTCCCTCC
CTCCCTCCCTCCTTGACTGTTGCCCGCGCCAGGTTCAAGTTTGCCATTAA
TGAGCTGGATGCCTGGGGAATGGTTGGCGGCGCCGCAAGAGACGAAGCGG
AGCACGCCGTCGTGTGTGGGCGGAGCCCCATCCCGAGAGGTGAACCTGGG
GAGGGTTTCGTGAGGCTCGCGTTCAACATGAGGTGGGGGTGGCAGGAGGA
CCCCAAGGTTTGATCATTTTTAATTGTCGTTTTGGGCACCCAACGAAGGC
GATGGGTCCCCATGTGTTGGTTGGTTGGTCGTCGTTGTTGGGTCGTCATT
GCCATGGTTACAACTCTCGCGCGCTGTCGTCTCTGACCGAGGTGACAGGG
AGGAGCGGTATGAAAAATTTGCTCCATCTCCTCCCCACTCCCATTCGTCG
GCGCAGAGAGTTAGCTAGTTGTTGAGTGGCACGTGGAGCATCAAGAGATG
GGAGCCGGGCCGCCCGCCTGTGTATTTTGACTGAGTAGTGCTATGCGGCC
CGCATCAAAAATTATGCGTAGTTTGTAGTCGGTTGATCCTTAGAGGACCA
GGGCGAACTGGTCACTGGTCGCAATCAACGCATCTTTATTCTAAATAGTC
AACTATCACTGAGGTCAGCGCTCGGTACTCGGAGGATGGTGTGGGAGGCA
GAGCCATGGTTTGAGTGCGTTCGCTGTTGGCTGTTGGCTGTTGGCTGTTG
GCTATTGTACATTCTGAAGAGTTGAGGTAATGTTAAAGAGGGTGCAGCAG
GGGTTGGAATGGATATATACACATATATAGAGAGAGATCTGTTGTCAGTG
GTTGTTCTGTCTTGGTTTGTTGGTTCGGCCTCCGCTGTCGTATTCGTCGT
ATTCGTCGTCTTGGCCGCTCTAGCGCTTTTTGTTTTTATTTTCATCGTAG
GCCTCTGGGCGATGAATCATTGTACCTAGTGTCAGTTGCGCCCCTGCGGT
GCGCTAGATCTGGATTATTAAGGGATTAGTTTCGTTGTTGTCGCTTTTGT
CTGTCTTGGTATCTCTTGGCTGTGGAATGTGTTCTCGCCGGGATGCAGTA
GTGCTGGATGTGCGTTGTATGTGAATTGCCCCCCCTGTCTTGCTGTGCAC
ATGCTCTCTTACGGGTAAGCATAGGCTGGCCGCGTTCAACTCGAGTAAGT
AGCATGTGCATCGATCAGTTTTCTTGCAAGAAACGTAAACACAACCCGCT
CGCAGTTGCTGAGTAGATATGCAAGAAGTTAAGTTGAGTTCTAGTAGAAC
CGTGGATCCGTAGCTTAACGAACTTGAAAGTGAGCATATGTGGAACATTG
AATGTTTGTGTTGTTTGAAGGACTGTATGTCTGCTGTTGCGTACACGAGT
GTCCGTGCTCTCAGAGGCCTCACTTCGATCGTAGGTTGCGTTCCGTATCG
GCCTGCATGTATTAGTTCCATGTGCGGTACACCGGGCGTCCTTTACAGAA
GTATAGTCCATAGCCATCCTGTAAAGTAGTTGTTAAGGCAGTTGTCTGAT
TTATGTTCGGTTCATTTTTGTTGAGAATGTATTGTAAACTTATTTACCGT
GTACTGCAGCTCAAGGGTATTGTACGAAGCGGTGACCTTGACTCTTCTCG
CTTGGTATTATGCGCTATTTTGGGCATATGCCAGTTTAGTGCTTCAGCCA
CGTAGGAGTATCTGACAACGGTGAATTGTCGATGTTGGTATGTGGAGCGG
GCGCTTGCGAGTTCCCACGTTCTACTGGGCCAAAAACACCGGCGTTTAAG
AGCTATTGGTCTGAGTCTGGTGGCGTGCTGTTGTTTTTCATCAAGTGGTG
ATCGCACTTGATTGTTTTGCGATGGCAAACGTTCGGTAGTGCTAGATGGA
TTAGTTACCTGTTGCGTGAGTAGGTTTCGTTGCTTGTTGTGCTGGTGGTA
TCGAAGTATATTTATATATTCGACTGCTTATTTTTTGCTCGTCGGTTCAT
TCCGGTAGGTCCGTGGCGACACGAGATTTGGTTGTGTTTCGTTACAACTT
ACTGAAGTTGGCGACTCGAAATGTGCGCCCATATCCTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig12965:1042..4879+ >mRNA_H-paniculata_contig12965.1857.1 ID=mRNA_H-paniculata_contig12965.1857.1|Name=mRNA_H-paniculata_contig12965.1857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at H-paniculata_contig12965:1042..4879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCCAGAGGGAAGCTTTCCGCGTGCAGTGTTCGGCCGTTCTTTGAG
ATGCTGCCAGAGGGAAGCTTTCCGCGTGCAGTGTTCGGCCGTTCTTTGAG
GTACCTGAAATCCTTCGCCGGGAGACTAGATGTACACCACGTTTTGTTGG
AGGCCGGGATCGCTACGGGGAAAGACAGCGCTGGTATTGGCGAAGCATGG
AGCGGGGGGGGCAGTCAGCACCCGCCTGAACGCCCGGGAGGTGCGCGGAA
AGTCGTTGCTGCCCCTCTACGACAAGGCCTCGGTGCTGACAAGTACTTCT
CTCGGCGCCACGGCCGGCGCGATCACAACTGGCAATGGAACATGGACGAC
AGTCCATGGGCTCGGAGTCTGATGGCCAAAGGTACCTGAAATCCTTCGCC
GGGAGACTAGATGTACACCACGTTTTGTTGGAGGCCGGGATCGCTACGGG
GAAAGACAGCGCTGGTATTGGCGAAGCATGGAGCGGGGGGGGCAGTCAGC
ACCCGCCTGAACGCCCGGGAGGTGCGCGGAAAGTCGTTGCTGCCCCTCTA
CGACAAGGCCTCGGTGCTGACAAGTACTTCTCTCGGCGCCACGGCCGGCG
CGATCACAACTGGCAATGGAACATGGACGACAGTCCATGGGCTCGGAGTC
TGATGGCCAAAGGTCGTTTGGCGCTGGGAGTACGAGAGGAAGAGGCCGAT
GAGTTCGAAGAGGCTGGGATTATCGCTTTTCCCGGTAGCGTGGTGAAACA
CAAAGATTCCAACAAAAACGGGGGTTACGGCAAGACCATCGGCACGTTGG
TATTGCGGTCACCGGAGCAAGCGTTTGTGTGTCTGCAGGTTCAGGGCAAA
CTACTCAGCAAAGCGATTGAGGCGGCGAGAGAGAGACATATACAATTGCC
GCCCAAGTTTGAGACGAAGGGAAGGTCGTTTGGCGCTGGGAGTACGAGAG
GAAGAGGCCGATGAGTTCGAAGAGGCTGGGATTATCGCTTTTCCCGGTAG
CGTGGTGAAACACAAAGATTCCAACAAAAACGGGGGTTACGGCAAGACCA
TCGGCACGTTGGTATTGCGGTCACCGGAGCAAGCGTTTGTGTGTCTGCAG
GTTCAGGGCAAACTACTCAGCAAAGCGATTGAGGCGGCGAGAGAGAGACA
TATACAATTGCCGCCCAAGTTTGAGACGAAGGGAAGGTTCAAGTTTGCCA
TTAATGAGCTGGATGCCTGGGGAATGGTTGGCGGCGCCGCAAGAGACGAA
GCGGAGCACGCCGTCGTGTGTGGGCGGAGCCCCATCCCGAGAGGTGAACC
TGGGGAGGGTTTCGTGAGGCTCGCGTTCAACATGAGGTGGGGGTGGCAGG
AGGACCCCAAGGTTTGAGTTCAAGTTTGCCATTAATGAGCTGGATGCCTG
GGGAATGGTTGGCGGCGCCGCAAGAGACGAAGCGGAGCACGCCGTCGTGT
GTGGGCGGAGCCCCATCCCGAGAGGTGAACCTGGGGAGGGTTTCGTGAGG
CTCGCGTTCAACATGAGGTGGGGGTGGCAGGAGGACCCCAAGGTTTGA back to top
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