mRNA_H-paniculata_contig12961.1855.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12961.1855.1
Unique NamemRNA_H-paniculata_contig12961.1855.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: D7FS68_ECTSI (RNA-splicing ligase RtcB homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS68_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 2.600e-55
Identity = 101/170 (59.41%), Postives = 114/170 (67.06%), Query Frame = 1
Query:    1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEY 510
            SIGLPDVHSGYGFA+GNVAAFDM+DP+AVVSPG                                                       GVGFDINCGVRLVRTNL+++D++PVK++LTQSLFDHIPVGVGTKG++PITAADLND LEMG+DWSIREGYAWVEDKEHCEEY
Sbjct:   82 SIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPG-------------------------------------------------------GVGFDINCGVRLVRTNLTLDDVLPVKEELTQSLFDHIPVGVGTKGMVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEY 196          
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: I4DRQ0_PAPPL (Simila to CG9987 n=1 Tax=Papilio polytes TaxID=76194 RepID=I4DRQ0_PAPPL)

HSP 1 Score: 186 bits (471), Expect = 1.720e-52
Identity = 100/203 (49.26%), Postives = 122/203 (60.10%), Query Frame = 1
Query:    1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYSTESTLNIFSWPSTYAARSRRTKASIERVGDIG 609
            SIGLPDVHSGYGFAIGN+AAFDMSDP ++VSPG                                                       GVGFDINCGVRL+RTNLS +D++P+K++L QSLFDHIPVGVG+KG+IP+ A DL +ALEMGMDWS+REGY W EDKEHCEEY     LN    PS  + R++  K  + ++G +G
Sbjct:   83 SIGLPDVHSGYGFAIGNMAAFDMSDPKSIVSPG-------------------------------------------------------GVGFDINCGVRLLRTNLSEKDVLPIKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGR--MLNAD--PSKVSLRAK--KRGLPQLGTLG 224          
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: V9IGC9_APICE (UPF0027 protein C22orf28 n=1 Tax=Apis cerana TaxID=7461 RepID=V9IGC9_APICE)

HSP 1 Score: 181 bits (460), Expect = 7.500e-52
Identity = 99/198 (50.00%), Postives = 118/198 (59.60%), Query Frame = 1
Query:    1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYSTESTLNIFSWPSTYAARSRRTKASIER 594
            S+GLPDVHSGYGFAIGN+AAFDM+DP ++VSPG                                                       GVGFDINCGVRL+RTNL  ED+ PVK++L QS+FDHIPVGVG+KG+IP+ A DL +ALEMGMDWS+REGY W EDKEHCEEY     LN  S  S  + R+++T AS  R
Sbjct:   53 SVGLPDVHSGYGFAIGNMAAFDMNDPKSIVSPG-------------------------------------------------------GVGFDINCGVRLLRTNLFEEDVQPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR--MLNADS--SKVSMRAKKTWASTVR 191          
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: K4HDB7_MALTE (Chromosome 22 open reading frame 28 (Fragment) n=2 Tax=Testudinoidea TaxID=8486 RepID=K4HDB7_MALTE)

HSP 1 Score: 182 bits (461), Expect = 1.600e-51
Identity = 98/203 (48.28%), Postives = 121/203 (59.61%), Query Frame = 1
Query:    1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYSTESTLNIFSWPSTYAARSRRTKASIERVGDIG 609
            SIGLPDVHSGYGFAIGN+AAFDMSDP+AVVSPG                                                       GVGFDINCGVRL+RTNL   D+ PVK++L Q++FDHIPVGVG+KGVIP+ A DL +ALEMG+DWS+REGYAW EDKEHCEEY      +    P+  ++R++  K  + ++G +G
Sbjct:   27 SIGLPDVHSGYGFAIGNMAAFDMSDPDAVVSPG-------------------------------------------------------GVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQAD----PNKVSSRAK--KRGLPQLGTLG 168          
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: A0A7J7JRD7_BUGNE (RNA-splicing ligase RtcB homolog n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JRD7_BUGNE)

HSP 1 Score: 188 bits (477), Expect = 3.340e-51
Identity = 96/170 (56.47%), Postives = 111/170 (65.29%), Query Frame = 1
Query:    1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEY 510
            S+GLPDVH+GYGFAIGN+AAFDMSDP+AVVSPG                                                       GVGFDINCGVRL+RTNLS +D++PVK++L QSLFDHIPVGVG+KGVIP++A DL +ALEMGMDWS+REGYAWVEDKEHCEEY
Sbjct:   53 SVGLPDVHAGYGFAIGNMAAFDMSDPSAVVSPG-------------------------------------------------------GVGFDINCGVRLLRTNLSEKDVLPVKEQLAQSLFDHIPVGVGSKGVIPMSAQDLEEALEMGMDWSLREGYAWVEDKEHCEEY 167          
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: A0A1B6GBD7_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Proconiini TaxID=565685 RepID=A0A1B6GBD7_9HEMI)

HSP 1 Score: 184 bits (467), Expect = 3.820e-51
Identity = 100/203 (49.26%), Postives = 121/203 (59.61%), Query Frame = 1
Query:    1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYSTESTLNIFSWPSTYAARSRRTKASIERVGDIG 609
            SIGLPDVHSGYGFAIGN+AAFDM DP +VVSPG                                                       GVGFDINCGVRL+RTNL  +D++PVK++L QS+FDHIPVGVG+KG+IP+TA DL +ALEMGMDWS+REGY W EDKEHCEEY     LN    PS  + R++  K  + ++G +G
Sbjct:   83 SIGLPDVHSGYGFAIGNMAAFDMGDPKSVVSPG-------------------------------------------------------GVGFDINCGVRLLRTNLMEKDVLPVKEQLAQSMFDHIPVGVGSKGIIPMTARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGR--MLNAD--PSKVSMRAK--KRGLPQLGTLG 224          
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: A0A2G8KTU3_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KTU3_STIJA)

HSP 1 Score: 187 bits (474), Expect = 4.580e-51
Identity = 99/203 (48.77%), Postives = 122/203 (60.10%), Query Frame = 1
Query:    1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYSTESTLNIFSWPSTYAARSRRTKASIERVGDIG 609
            SIGLPD+HSGYGFAIGN+AAFDM DP AVVSPG                                                       GVGFDINCGVRL+RTNL ++D+IPVK++L Q++FDHIPVGVG+KG+IP+ A DL +ALEMGMDWS+REGYAW EDKEHCEEY      +    PS  +AR++  K  + ++G +G
Sbjct:   84 SIGLPDIHSGYGFAIGNMAAFDMDDPQAVVSPG-------------------------------------------------------GVGFDINCGVRLLRTNLQMKDVIPVKEQLAQAMFDHIPVGVGSKGIIPMGARDLEEALEMGMDWSLREGYAWAEDKEHCEEYGRMLQAD----PSKVSARAK--KRGLPQLGTLG 225          
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: A0A7S3BHP6_9VIRI (RNA-splicing ligase RtcB homolog n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S3BHP6_9VIRI)

HSP 1 Score: 189 bits (479), Expect = 4.630e-51
Identity = 98/203 (48.28%), Postives = 122/203 (60.10%), Query Frame = 1
Query:    1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYSTESTLNIFSWPSTYAARSRRTKASIERVGDIG 609
            S+GLPDVHSGYGFAIGNVAAFDM DP A+VSPG                                                       GVGFDINCGVRL+RTNL+  D++P+K++L QSLFDHIPVGVG++G+IP TA DLN+ LEMGMDWS+REG+AWVEDKEHCEEY    T +    P+  + R++  K  + ++G +G
Sbjct:  103 SVGLPDVHSGYGFAIGNVAAFDMDDPEAIVSPG-------------------------------------------------------GVGFDINCGVRLIRTNLTEADVLPIKEELAQSLFDHIPVGVGSQGIIPTTAGDLNEVLEMGMDWSVREGFAWVEDKEHCEEYGRMLTAD----PNKVSTRAK--KRGLPQMGTLG 244          
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: A0A7S0SSY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSY3_9STRA)

HSP 1 Score: 179 bits (453), Expect = 7.040e-51
Identity = 93/170 (54.71%), Postives = 103/170 (60.59%), Query Frame = 1
Query:    1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEY 510
            S G+PDVHSGYGFAIGNVAAFDM DPNA+VSPG                                                       GVGFDINCGVRL+RTNL+ +D+ PV++ L QSLFDHIPVGVG+KGVIP T  DL  ALEMGMDWS+REGYAW EDKEHCEEY
Sbjct:   80 SFGMPDVHSGYGFAIGNVAAFDMDDPNAIVSPG-------------------------------------------------------GVGFDINCGVRLLRTNLTEKDVGPVRENLAQSLFDHIPVGVGSKGVIPTTNDDLEAALEMGMDWSVREGYAWAEDKEHCEEY 194          
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: Q5C6U4_SCHJA (SJCHGC04301 protein (Fragment) n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=Q5C6U4_SCHJA)

HSP 1 Score: 181 bits (460), Expect = 7.720e-51
Identity = 94/203 (46.31%), Postives = 123/203 (60.59%), Query Frame = 1
Query:    1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYSTESTLNIFSWPSTYAARSRRTKASIERVGDIG 609
            S+GLPDVHSGYGFAIGN+AAFD+++P +VVSPG                                                       GVGFDINCGVRL+RTNL+++D++PVK+KLTQ+LFDHIPVGVG+KG+IP+ A  L +ALEMGMDWS+R+GY W EDKEHCEEY      +    PS  ++R++  K  + ++G +G
Sbjct:   82 SVGLPDVHSGYGFAIGNMAAFDLANPKSVVSPG-------------------------------------------------------GVGFDINCGVRLIRTNLTLKDVLPVKEKLTQTLFDHIPVGVGSKGIIPMDAQALEEALEMGMDWSLRQGYVWAEDKEHCEEYGRMLQAD----PSKVSSRAK--KRGLPQLGTLG 223          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS68_ECTSI2.600e-5559.41RNA-splicing ligase RtcB homolog n=2 Tax=Ectocarpu... [more]
I4DRQ0_PAPPL1.720e-5249.26Simila to CG9987 n=1 Tax=Papilio polytes TaxID=761... [more]
V9IGC9_APICE7.500e-5250.00UPF0027 protein C22orf28 n=1 Tax=Apis cerana TaxID... [more]
K4HDB7_MALTE1.600e-5148.28Chromosome 22 open reading frame 28 (Fragment) n=2... [more]
A0A7J7JRD7_BUGNE3.340e-5156.47RNA-splicing ligase RtcB homolog n=1 Tax=Bugula ne... [more]
A0A1B6GBD7_9HEMI3.820e-5149.26Uncharacterized protein (Fragment) n=2 Tax=Proconi... [more]
A0A2G8KTU3_STIJA4.580e-5148.77Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A7S3BHP6_9VIRI4.630e-5148.28RNA-splicing ligase RtcB homolog n=3 Tax=Eukaryota... [more]
A0A7S0SSY3_9STRA7.040e-5154.71Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
Q5C6U4_SCHJA7.720e-5146.31SJCHGC04301 protein (Fragment) n=1 Tax=Schistosoma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12961contigH-paniculata_contig12961:187..2522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.2
Seed ortholog evalue2.4e-40
Seed eggNOG ortholog2880.D7FS68
Preferred nameRTCB
KEGG koko:K14415
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000378,GO:0000394,GO:0000968,GO:0000971,GO:0001701,GO:0001890,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0003972,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0008033,GO:0008092,GO:0008150,GO:0008152,GO:0008380,GO:0008452,GO:0009790,GO:0009791,GO:0009792,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0016020,GO:0016070,GO:0016874,GO:0016886,GO:0017166,GO:0019219,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0031323,GO:0031325,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0040025,GO:0042175,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046483,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048569,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051704,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0072669,GO:0080090,GO:0090304,GO:0098827,GO:0140098,GO:1901360,GO:1903326,GO:1903328,GO:2000235,GO:2000237
EggNOG free text desc.RNA ligase (ATP) activity
EggNOG OGsCOG1690@1,KOG3833@2759
EC6.5.1.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons5
Model size1234
Cds size585
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.2844105-UTR-H-paniculata_contig12961:186..7231622929022.2844105-UTR-H-paniculata_contig12961:186..723Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12961 187..723 -
1691480702.8577085-UTR-H-paniculata_contig12961:186..7231691480702.8577085-UTR-H-paniculata_contig12961:186..723Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12961 187..723 -
1622929022.2958078-UTR-H-paniculata_contig12961:986..10321622929022.2958078-UTR-H-paniculata_contig12961:986..1032Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12961 987..1032 -
1691480702.8714228-UTR-H-paniculata_contig12961:986..10321691480702.8714228-UTR-H-paniculata_contig12961:986..1032Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12961 987..1032 -
1622929022.3669524-UTR-H-paniculata_contig12961:2456..25221622929022.3669524-UTR-H-paniculata_contig12961:2456..2522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12961 2457..2522 -
1691480702.9240174-UTR-H-paniculata_contig12961:2456..25221691480702.9240174-UTR-H-paniculata_contig12961:2456..2522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12961 2457..2522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.3093803-CDS-H-paniculata_contig12961:1032..11771622929022.3093803-CDS-H-paniculata_contig12961:1032..1177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12961 1033..1177 -
1691480702.8800092-CDS-H-paniculata_contig12961:1032..11771691480702.8800092-CDS-H-paniculata_contig12961:1032..1177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12961 1033..1177 -
1622929022.3224545-CDS-H-paniculata_contig12961:1521..15891622929022.3224545-CDS-H-paniculata_contig12961:1521..1589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12961 1522..1589 -
1691480702.8890715-CDS-H-paniculata_contig12961:1521..15891691480702.8890715-CDS-H-paniculata_contig12961:1521..1589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12961 1522..1589 -
1622929022.3355296-CDS-H-paniculata_contig12961:1754..19991622929022.3355296-CDS-H-paniculata_contig12961:1754..1999Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12961 1755..1999 -
1691480702.898332-CDS-H-paniculata_contig12961:1754..19991691480702.898332-CDS-H-paniculata_contig12961:1754..1999Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12961 1755..1999 -
1622929022.351877-CDS-H-paniculata_contig12961:2329..24561622929022.351877-CDS-H-paniculata_contig12961:2329..2456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12961 2330..2456 -
1691480702.9087615-CDS-H-paniculata_contig12961:2329..24561691480702.9087615-CDS-H-paniculata_contig12961:2329..2456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12961 2330..2456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12961.1855.1prot_H-paniculata_contig12961.1855.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12961 1033..2456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12961.1855.1

>prot_H-paniculata_contig12961.1855.1 ID=prot_H-paniculata_contig12961.1855.1|Name=mRNA_H-paniculata_contig12961.1855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALH
VMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLF
DHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYST
ESTLNIFSWPSTYAARSRRTKASIERVGDIGVAPKSSRLPPPSQ*
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mRNA from alignment at H-paniculata_contig12961:187..2522-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12961.1855.1 ID=mRNA_H-paniculata_contig12961.1855.1|Name=mRNA_H-paniculata_contig12961.1855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2336bp|location=Sequence derived from alignment at H-paniculata_contig12961:187..2522- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGATCGGATTGCCCGACGTTCACTCCGGCTACGGATTCGCAATCGGAAA TGTGGCTGCTTTCGACATGTCGGATCCGAACGCAGTGGTGTCTCCAGGTA GGGTTCTTGTCTTGTCCTTGTCTTGTCTCATACTTGCTAATGCTCACGTA CGTCTGAGGAGTGGTACGTTATATTTACTGGTAGTTACGGTGCGTGTTGC TTTTTTCTTGTTTTTGTCTCGAAGTGAAATGTTAGTGTTAGTGTTTGCGC ATGCGGTGCTGGCCATTTTGAGCTGCGTGTGCTTGTACGAGTGGCGTTGT ATTTACTTATGTATGTATGTTATGTATAGATGTATAGACGTATGTTGTTT TATTGTCTTTCTGTGAACAATGAGCCTTTTTTTTTATTTTCCATTCATCG TTTTCGCTTTTTTCGATTTTTTTTGGTTCTATATGCTGTAATCCTTGCCG ACCTCTTTGAAAAGCAAGTGATAAACCAAACAATAATACTTGCGTCTGCC TTCCTGCTATACCCACAAGAAAGATGCTTCTGCGGCTGCTCTTCATGTAA TGTGCCGCTGTCGTTTGTTTTTATTATGGATTGTTCCACCAGGGGGGGTA GGTTTCGACATAAACTGTGGCGTGCGGTTGGTGCGGACGAACCTGTCCAT CGAAGACATCATACCTGTGAAAGACAAGCTGACCCAGTCGCTATTCGATC ATATCCCCGTCGGTGTAGGAACAAAGGGCGTCATCCCAATCACCGCTGCA GACCTCAACGATGCCCTGGTGCGTTTATTATTTAAATAGGACTTTTAGTT GTATGAAAAGAAAAGCTAACCTCGTGATGTGTCGTTTCTCGTCTCTCTCG TATCTTGACATACGTATATTGTCTCTGTTGCGTGCTTGCTGCATGTATGG CCTGCCATAAACATTTCCGCGATTTTTCCGCAGGAGATGGGGATGGACTG GTCGATCCGAGAGGGATACGCTTGGGTGGAGGACAAGGAGCACTGCGAGG AGTACGGCAGGATGCTACAGGCCGATCCTAATAAGGCAAGATTTCACGAG AAAAGAGCACGATAAACAGCTTTAGTGGGCAATCTTGAATCGTGTAATTG ACAGTCTCAACACGAAGAGATACCTATTAATATGAGATACTATTAATATT ACCTATCTGAAAACAATGTGGAGCGCTGCAGTCGTTGTCGGTAGAGTGAT ATCTACTACCTGCATGCGCTGTATATACAGTGCATGTATTGTCTGTACTA GACTATGTATACCTGCGCAGCAGTGGATCTTTTCCCCCACATCGTGTCGT ACTGTATATCGTTTCCCCCTGCTTTTGAGGTGAGTGATCGGACAGGTATT CTACTGAATCGACCCTGAATATTTTCAGTTGGCCATCTACATACGCCGCA CGTTCGCGGAGGACGAAGGCATCAATTGAGAGGGTTGGAGATATTGGAGT TGCGCCGAAGAGTTCACGCTTGCCTCCACCGTCCCAGTGACAACTGCAAG CGATGGTTGATATTGCTGCTGCGCTTTCCCGCGACCGTGTGGGTCTGAGA TTATATGATAGTTTGTGTGGAGAAAACGTACTGTGCAATATTTTAATTGG GCTTGTTCTAAGGGTTAGGCGTTTTTTTCTCAACCATTTCAACCATCTCA AGCATTCGAACCCTTAGAGGCCAAAAAAGAAACCCACTCGCACACTCGTT CACACCCTGGTCCTCACCCTAGCCATAGCCCTCCGTACTCCTCAATGATT GCTGTGCTGATGTTCCTGCTGCCGTCATGGAATGCTTGGAACTGCGCAGG TCAGCAGACGCGCCAAGATCCGTGGCTTGCCCCAGCTCGGCACATTAGGC GCGGGCAACCATTATGCGGAGATCCAGGTCGTGGACGAGGTGTTCAACGA ACAGGCCGCGAAGAAGATGGGGATCGACCGCGTGGGGCAGGTGGAATGGA TTGTACATAACGGAGTATATATATGTAATATTTATATACGTGCATGTTTG TGGTTGGCGGATGACAAGCCGATTTGACCCGCCTTGAATATGGTTTGACC TTAAATAGGAATGCTTGAGTCGAGGTACCCACTGTAGTGTAGGGTTAATG GTCGCGATTTGCTCAGGTCGCCGCGCAGATCGCCCCCAAGAACAAATGCT TCCAGTTCGAGTCACAAGAACGGGTTAAGTGGCAAATATTTAAACCTTTA ATGTCTGACAATAATATTATTTCTGTTACCCTATAATCTGTTTTATAATT GTTTAACAAAAAATACCAATCTCACGGGTATGTACAATACAATACCTTAT AAAAATAGCTCGATAATAAAGAGTAAACCTCCAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12961:187..2522-

>mRNA_H-paniculata_contig12961.1855.1 ID=mRNA_H-paniculata_contig12961.1855.1|Name=mRNA_H-paniculata_contig12961.1855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig12961:187..2522- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGATCCGAACGCAGTGGTGTCTCCAGGTAGGGTTCTTGTCTTGTC
CTTGTCTTGTCTCATACTTGCTAATGCTCACGTACGTCTGAGGAGTGGTA
CGTTATATTTACTGGTAGTTACGGTGCATGTCGGATCCGAACGCAGTGGT
GTCTCCAGGTAGGGTTCTTGTCTTGTCCTTGTCTTGTCTCATACTTGCTA
ATGCTCACGTACGTCTGAGGAGTGGTACGTTATATTTACTGGTAGTTACG
GTGCATGCTTCTGCGGCTGCTCTTCATGTAATGTGCCGCTGTCGTTTGTT
TTTATTATGGATTGTTCCACCAGGGGGGGTAGGTTTCGACATAAACTGTG
GCGTGCGGTTGGTGCGGACGAACCTGTCCATCGAAGACATCATACCTGTG
AAAGACAAGCTGACCCAGTCGCTATTCGATCATATCCCCGTCGGTGTAGG
AACAAAGGGCGTCATCCCAATCACCGCTGCAGACCTCAACGATGCCCTGA
TGCTTCTGCGGCTGCTCTTCATGTAATGTGCCGCTGTCGTTTGTTTTTAT
TATGGATTGTTCCACCAGGGGGGGTAGGTTTCGACATAAACTGTGGCGTG
CGGTTGGTGCGGACGAACCTGTCCATCGAAGACATCATACCTGTGAAAGA
CAAGCTGACCCAGTCGCTATTCGATCATATCCCCGTCGGTGTAGGAACAA
AGGGCGTCATCCCAATCACCGCTGCAGACCTCAACGATGCCCTGGAGATG
GGGATGGACTGGTCGATCCGAGAGGGATACGCTTGGGTGGAGGACAAGGA
GCACTGCGAGGAGAGATGGGGATGGACTGGTCGATCCGAGAGGGATACGC
TTGGGTGGAGGACAAGGAGCACTGCGAGGAGTATTCTACTGAATCGACCC
TGAATATTTTCAGTTGGCCATCTACATACGCCGCACGTTCGCGGAGGACG
AAGGCATCAATTGAGAGGGTTGGAGATATTGGAGTTGCGCCGAAGAGTTC
ACGCTTGCCTCCACCGTCCCAGTGAGTATTCTACTGAATCGACCCTGAAT
ATTTTCAGTTGGCCATCTACATACGCCGCACGTTCGCGGAGGACGAAGGC
ATCAATTGAGAGGGTTGGAGATATTGGAGTTGCGCCGAAGAGTTCACGCT
TGCCTCCACCGTCCCAGTGA
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