mRNA_H-paniculata_contig12961.1855.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: D7FS68_ECTSI (RNA-splicing ligase RtcB homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS68_ECTSI) HSP 1 Score: 199 bits (507), Expect = 2.600e-55 Identity = 101/170 (59.41%), Postives = 114/170 (67.06%), Query Frame = 1 Query: 1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEY 510 SIGLPDVHSGYGFA+GNVAAFDM+DP+AVVSPG GVGFDINCGVRLVRTNL+++D++PVK++LTQSLFDHIPVGVGTKG++PITAADLND LEMG+DWSIREGYAWVEDKEHCEEY Sbjct: 82 SIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPG-------------------------------------------------------GVGFDINCGVRLVRTNLTLDDVLPVKEELTQSLFDHIPVGVGTKGMVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEY 196
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: I4DRQ0_PAPPL (Simila to CG9987 n=1 Tax=Papilio polytes TaxID=76194 RepID=I4DRQ0_PAPPL) HSP 1 Score: 186 bits (471), Expect = 1.720e-52 Identity = 100/203 (49.26%), Postives = 122/203 (60.10%), Query Frame = 1 Query: 1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYSTESTLNIFSWPSTYAARSRRTKASIERVGDIG 609 SIGLPDVHSGYGFAIGN+AAFDMSDP ++VSPG GVGFDINCGVRL+RTNLS +D++P+K++L QSLFDHIPVGVG+KG+IP+ A DL +ALEMGMDWS+REGY W EDKEHCEEY LN PS + R++ K + ++G +G Sbjct: 83 SIGLPDVHSGYGFAIGNMAAFDMSDPKSIVSPG-------------------------------------------------------GVGFDINCGVRLLRTNLSEKDVLPIKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGR--MLNAD--PSKVSLRAK--KRGLPQLGTLG 224
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: V9IGC9_APICE (UPF0027 protein C22orf28 n=1 Tax=Apis cerana TaxID=7461 RepID=V9IGC9_APICE) HSP 1 Score: 181 bits (460), Expect = 7.500e-52 Identity = 99/198 (50.00%), Postives = 118/198 (59.60%), Query Frame = 1 Query: 1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYSTESTLNIFSWPSTYAARSRRTKASIER 594 S+GLPDVHSGYGFAIGN+AAFDM+DP ++VSPG GVGFDINCGVRL+RTNL ED+ PVK++L QS+FDHIPVGVG+KG+IP+ A DL +ALEMGMDWS+REGY W EDKEHCEEY LN S S + R+++T AS R Sbjct: 53 SVGLPDVHSGYGFAIGNMAAFDMNDPKSIVSPG-------------------------------------------------------GVGFDINCGVRLLRTNLFEEDVQPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR--MLNADS--SKVSMRAKKTWASTVR 191
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: K4HDB7_MALTE (Chromosome 22 open reading frame 28 (Fragment) n=2 Tax=Testudinoidea TaxID=8486 RepID=K4HDB7_MALTE) HSP 1 Score: 182 bits (461), Expect = 1.600e-51 Identity = 98/203 (48.28%), Postives = 121/203 (59.61%), Query Frame = 1 Query: 1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYSTESTLNIFSWPSTYAARSRRTKASIERVGDIG 609 SIGLPDVHSGYGFAIGN+AAFDMSDP+AVVSPG GVGFDINCGVRL+RTNL D+ PVK++L Q++FDHIPVGVG+KGVIP+ A DL +ALEMG+DWS+REGYAW EDKEHCEEY + P+ ++R++ K + ++G +G Sbjct: 27 SIGLPDVHSGYGFAIGNMAAFDMSDPDAVVSPG-------------------------------------------------------GVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQAD----PNKVSSRAK--KRGLPQLGTLG 168
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: A0A7J7JRD7_BUGNE (RNA-splicing ligase RtcB homolog n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JRD7_BUGNE) HSP 1 Score: 188 bits (477), Expect = 3.340e-51 Identity = 96/170 (56.47%), Postives = 111/170 (65.29%), Query Frame = 1 Query: 1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEY 510 S+GLPDVH+GYGFAIGN+AAFDMSDP+AVVSPG GVGFDINCGVRL+RTNLS +D++PVK++L QSLFDHIPVGVG+KGVIP++A DL +ALEMGMDWS+REGYAWVEDKEHCEEY Sbjct: 53 SVGLPDVHAGYGFAIGNMAAFDMSDPSAVVSPG-------------------------------------------------------GVGFDINCGVRLLRTNLSEKDVLPVKEQLAQSLFDHIPVGVGSKGVIPMSAQDLEEALEMGMDWSLREGYAWVEDKEHCEEY 167
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: A0A1B6GBD7_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Proconiini TaxID=565685 RepID=A0A1B6GBD7_9HEMI) HSP 1 Score: 184 bits (467), Expect = 3.820e-51 Identity = 100/203 (49.26%), Postives = 121/203 (59.61%), Query Frame = 1 Query: 1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYSTESTLNIFSWPSTYAARSRRTKASIERVGDIG 609 SIGLPDVHSGYGFAIGN+AAFDM DP +VVSPG GVGFDINCGVRL+RTNL +D++PVK++L QS+FDHIPVGVG+KG+IP+TA DL +ALEMGMDWS+REGY W EDKEHCEEY LN PS + R++ K + ++G +G Sbjct: 83 SIGLPDVHSGYGFAIGNMAAFDMGDPKSVVSPG-------------------------------------------------------GVGFDINCGVRLLRTNLMEKDVLPVKEQLAQSMFDHIPVGVGSKGIIPMTARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGR--MLNAD--PSKVSMRAK--KRGLPQLGTLG 224
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: A0A2G8KTU3_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KTU3_STIJA) HSP 1 Score: 187 bits (474), Expect = 4.580e-51 Identity = 99/203 (48.77%), Postives = 122/203 (60.10%), Query Frame = 1 Query: 1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYSTESTLNIFSWPSTYAARSRRTKASIERVGDIG 609 SIGLPD+HSGYGFAIGN+AAFDM DP AVVSPG GVGFDINCGVRL+RTNL ++D+IPVK++L Q++FDHIPVGVG+KG+IP+ A DL +ALEMGMDWS+REGYAW EDKEHCEEY + PS +AR++ K + ++G +G Sbjct: 84 SIGLPDIHSGYGFAIGNMAAFDMDDPQAVVSPG-------------------------------------------------------GVGFDINCGVRLLRTNLQMKDVIPVKEQLAQAMFDHIPVGVGSKGIIPMGARDLEEALEMGMDWSLREGYAWAEDKEHCEEYGRMLQAD----PSKVSARAK--KRGLPQLGTLG 225
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: A0A7S3BHP6_9VIRI (RNA-splicing ligase RtcB homolog n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S3BHP6_9VIRI) HSP 1 Score: 189 bits (479), Expect = 4.630e-51 Identity = 98/203 (48.28%), Postives = 122/203 (60.10%), Query Frame = 1 Query: 1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYSTESTLNIFSWPSTYAARSRRTKASIERVGDIG 609 S+GLPDVHSGYGFAIGNVAAFDM DP A+VSPG GVGFDINCGVRL+RTNL+ D++P+K++L QSLFDHIPVGVG++G+IP TA DLN+ LEMGMDWS+REG+AWVEDKEHCEEY T + P+ + R++ K + ++G +G Sbjct: 103 SVGLPDVHSGYGFAIGNVAAFDMDDPEAIVSPG-------------------------------------------------------GVGFDINCGVRLIRTNLTEADVLPIKEELAQSLFDHIPVGVGSQGIIPTTAGDLNEVLEMGMDWSVREGFAWVEDKEHCEEYGRMLTAD----PNKVSTRAK--KRGLPQMGTLG 244
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: A0A7S0SSY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSY3_9STRA) HSP 1 Score: 179 bits (453), Expect = 7.040e-51 Identity = 93/170 (54.71%), Postives = 103/170 (60.59%), Query Frame = 1 Query: 1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEY 510 S G+PDVHSGYGFAIGNVAAFDM DPNA+VSPG GVGFDINCGVRL+RTNL+ +D+ PV++ L QSLFDHIPVGVG+KGVIP T DL ALEMGMDWS+REGYAW EDKEHCEEY Sbjct: 80 SFGMPDVHSGYGFAIGNVAAFDMDDPNAIVSPG-------------------------------------------------------GVGFDINCGVRLLRTNLTEKDVGPVRENLAQSLFDHIPVGVGSKGVIPTTNDDLEAALEMGMDWSVREGYAWAEDKEHCEEY 194
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Match: Q5C6U4_SCHJA (SJCHGC04301 protein (Fragment) n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=Q5C6U4_SCHJA) HSP 1 Score: 181 bits (460), Expect = 7.720e-51 Identity = 94/203 (46.31%), Postives = 123/203 (60.59%), Query Frame = 1 Query: 1 SIGLPDVHSGYGFAIGNVAAFDMSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHVMCRCRLFLLWIVPPGGVGFDINCGVRLVRTNLSIEDIIPVKDKLTQSLFDHIPVGVGTKGVIPITAADLNDALEMGMDWSIREGYAWVEDKEHCEEYSTESTLNIFSWPSTYAARSRRTKASIERVGDIG 609 S+GLPDVHSGYGFAIGN+AAFD+++P +VVSPG GVGFDINCGVRL+RTNL+++D++PVK+KLTQ+LFDHIPVGVG+KG+IP+ A L +ALEMGMDWS+R+GY W EDKEHCEEY + PS ++R++ K + ++G +G Sbjct: 82 SVGLPDVHSGYGFAIGNMAAFDLANPKSVVSPG-------------------------------------------------------GVGFDINCGVRLIRTNLTLKDVLPVKEKLTQTLFDHIPVGVGSKGIIPMDAQALEEALEMGMDWSLRQGYVWAEDKEHCEEYGRMLQAD----PSKVSSRAK--KRGLPQLGTLG 223 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12961.1855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12961.1855.1 >prot_H-paniculata_contig12961.1855.1 ID=prot_H-paniculata_contig12961.1855.1|Name=mRNA_H-paniculata_contig12961.1855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp MSDPNAVVSPGRVLVLSLSCLILANAHVRLRSGTLYLLVVTVHASAAALHback to top mRNA from alignment at H-paniculata_contig12961:187..2522- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12961.1855.1 ID=mRNA_H-paniculata_contig12961.1855.1|Name=mRNA_H-paniculata_contig12961.1855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2336bp|location=Sequence derived from alignment at H-paniculata_contig12961:187..2522- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12961:187..2522- >mRNA_H-paniculata_contig12961.1855.1 ID=mRNA_H-paniculata_contig12961.1855.1|Name=mRNA_H-paniculata_contig12961.1855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig12961:187..2522- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |