mRNA_H-paniculata_contig12960.1854.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12960.1854.1
Unique NamemRNA_H-paniculata_contig12960.1854.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12960.1854.1 vs. uniprot
Match: D8LI28_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI28_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 4.550e-32
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:    1 RGFYNELPIRLDNVPAEAQ----NNETITTVVTGSYREGFVDPATGNLRRVPLEILRVEKRGNAPIYGAARNT 207
            RGFYNELPIR D VPAEAQ    NNETI+TVV+GSYREGFVDPATG+LRR+PLEILRV +RGNAP+YGAARNT
Sbjct:  255 RGFYNELPIRYDGVPAEAQVGSDNNETISTVVSGSYREGFVDPATGSLRRLPLEILRVGRRGNAPVYGAARNT 327
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BLAST of mRNA_H-paniculata_contig12960.1854.1 vs. uniprot
Match: A0A6H5KQ41_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ41_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.490e-30
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    1 RGFYNELPIRLDNVPAEAQ----NNETITTVVTGSYREGFVDPATGNLRRVPLEILRVEKRGNAPIYGAARNT 207
            RGFYNELPIR D VPAEAQ    NNETI+TVV+GSYREGFVDPATG LRR+PLEILRV ++GN P+YGAARNT
Sbjct:  407 RGFYNELPIRFDGVPAEAQVGSDNNETISTVVSGSYREGFVDPATGTLRRLPLEILRVGRKGNVPVYGAARNT 479
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BLAST of mRNA_H-paniculata_contig12960.1854.1 vs. uniprot
Match: A0A836CJU1_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.040e-18
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 RGFYNELPIRLDNVPAEAQNNETITTVVTGSYREGFVDPATGNLRRVPLEILRVE-KRGNAPIYGAARNT 207
            RGFYN LP+   N   +A  N T+   + G+YREGFVDP TGN+RR+PLE+LR + K GN P YGAARNT
Sbjct:  289 RGFYNGLPVSF-NATEDAGTNSTLQVAIGGTYREGFVDPITGNVRRLPLEVLRADPKSGNVPFYGAARNT 357
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BLAST of mRNA_H-paniculata_contig12960.1854.1 vs. uniprot
Match: A0A6I5NVV2_9CYAN (Peptidylprolyl isomerase n=1 Tax=Leptolyngbya sp. SIOISBB TaxID=2607771 RepID=A0A6I5NVV2_9CYAN)

HSP 1 Score: 51.2 bits (121), Expect = 8.680e-6
Identity = 28/65 (43.08%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:    1 RGFYNELPIRLDNVPAEAQNNETITTVVTGSYREGFVDPATGNLRRVPLEILRVEKRGNAPIYGA 195
            RGFY+++P         A++N  + T        GF+DPATG  R VPLEIL   K   AP YGA
Sbjct:  214 RGFYDDMPF------TRAEDNYVLQTGDPAGPENGFIDPATGEYRAVPLEIL--VKGDEAPTYGA 270
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BLAST of mRNA_H-paniculata_contig12960.1854.1 vs. uniprot
Match: A0A0G4FZ17_VITBC (Peptidylprolyl isomerase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FZ17_VITBC)

HSP 1 Score: 51.2 bits (121), Expect = 8.930e-6
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   43 PAEAQNNE---TITTVVTGSYREGFVDPATGNLRRVPLEILRVE 165
            P E+  NE   +  TV+ G Y+EGFVDP+TG LR+VPLE++R +
Sbjct:  409 PDESAINERPVSFQTVIGGRYKEGFVDPSTGRLRKVPLEVMRFD 452
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BLAST of mRNA_H-paniculata_contig12960.1854.1 vs. uniprot
Match: A0A7R9Y8S6_9STRA (Peptidylprolyl isomerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8S6_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 9.160e-5
Identity = 25/71 (35.21%), Postives = 35/71 (49.30%), Query Frame = 1 
Query:    1 RGFYNELPIRLDNVPAEAQNNETITTVVTGSYREGFVDPATGNLRRVPLEILR--VEKRGNAPIYGAARNT 207
            R +YN L         +  +   +  ++ G Y  GFVDP TG LR +PLE+LR   +        GAARN+
Sbjct:  131 RNYYNGLGFNYTLAVPDGNSEGGVPVLLGGLYNPGFVDPITGKLRLLPLEVLRQSTDSSKRTIAVGAARNS 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12960.1854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LI28_ECTSI4.550e-3282.19Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KQ41_9PHAE1.490e-3079.45Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC... [more]
A0A836CJU1_9STRA1.040e-1858.57Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A6I5NVV2_9CYAN8.680e-643.08Peptidylprolyl isomerase n=1 Tax=Leptolyngbya sp. ... [more]
A0A0G4FZ17_VITBC8.930e-652.27Peptidylprolyl isomerase n=1 Tax=Vitrella brassica... [more]
A0A7R9Y8S6_9STRA9.160e-535.21Peptidylprolyl isomerase n=1 Tax=Pinguiococcus pyr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12960contigH-paniculata_contig12960:6310..6931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue6e-26
Seed eggNOG ortholog2880.D8LI28
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGs2SRDI@2759,COG0652@1
Ec32 ortholog descriptionPeptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
Ec32 orthologEc-04_003010.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.229742-CDS-H-paniculata_contig12960:6309..64591622929022.229742-CDS-H-paniculata_contig12960:6309..6459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12960 6310..6459 -
1691480702.8365998-CDS-H-paniculata_contig12960:6309..64591691480702.8365998-CDS-H-paniculata_contig12960:6309..6459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12960 6310..6459 -
1622929022.2437503-CDS-H-paniculata_contig12960:6874..69311622929022.2437503-CDS-H-paniculata_contig12960:6874..6931Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12960 6875..6931 -
1691480702.8464615-CDS-H-paniculata_contig12960:6874..69311691480702.8464615-CDS-H-paniculata_contig12960:6874..6931Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12960 6875..6931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12960.1854.1prot_H-paniculata_contig12960.1854.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12960 6310..6931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12960.1854.1

>prot_H-paniculata_contig12960.1854.1 ID=prot_H-paniculata_contig12960.1854.1|Name=mRNA_H-paniculata_contig12960.1854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
RGFYNELPIRLDNVPAEAQNNETITTVVTGSYREGFVDPATGNLRRVPLE
ILRVEKRGNAPIYGAARNT
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mRNA from alignment at H-paniculata_contig12960:6310..6931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12960.1854.1 ID=mRNA_H-paniculata_contig12960.1854.1|Name=mRNA_H-paniculata_contig12960.1854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=622bp|location=Sequence derived from alignment at H-paniculata_contig12960:6310..6931- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGGATTCTACAACGAGCTTCCGATCCGGTTGGATAACGTGCCGGCCGA
GGCTCAGGTGAATCCCTTTATTGTCTTGTCCATATATATGTATATATATA
TATATTAACAATCAATGTTCTGTGTGGTGGGATTTTTTATTTTTATTTTT
AATCCCCGGAAGGCTGAGTGGTGGGAGATAGGTCGTGCTAGAGAGGGAGA
AAGCCCCTACAAGTGAGGCACAGGTCACCGAATAGAGATGGTAGTCGTTT
AGTATGTTTGGTGTTTTTTTAATAACGCCCTTGCTGTCGTCGTCGTCGTC
GTCGTCGTCGTTGTTGTTGTTGTTGTTCGTTTCTTCGTGTTTGTGTATGT
GTGTGTATGTGTGTGTATGTGTTTGTATGTGTGTGTTTTCCTTCTCTATT
TTCTCCTTTTCCCTTTTTCCTTTACACCGGAATGAATACATGTGCTATGG
CACAAGCAAGGTCGGTGCAGAGAACAACGAGACGATTACGACAGTGGTGA
CCGGTTCCTACAGGGAGGGTTTCGTTGACCCCGCCACCGGCAATCTGCGC
AGAGTGCCGCTGGAAATTCTGCGCGTTGAAAAGAGGGGGAACGCTCCGAT
CTATGGCGCGGCGCGCAATACC
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Coding sequence (CDS) from alignment at H-paniculata_contig12960:6310..6931-

>mRNA_H-paniculata_contig12960.1854.1 ID=mRNA_H-paniculata_contig12960.1854.1|Name=mRNA_H-paniculata_contig12960.1854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig12960:6310..6931- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGGATTCTACAACGAGCTTCCGATCCGGTTGGATAACGTGCCGGCCGA
GGCTCAGAGGGGATTCTACAACGAGCTTCCGATCCGGTTGGATAACGTGC
CGGCCGAGGCTCAGAACAACGAGACGATTACGACAGTGGTGACCGGTTCC
TACAGGGAGGGTTTCGTTGACCCCGCCACCGGCAATCTGCGCAGAGTGCC
GCTGGAAATTCTGCGCGTTGAAAAGAGGGGGAACGCTCCGATCTATGGCG
CGGCGCGCAATACCAACAACGAGACGATTACGACAGTGGTGACCGGTTCC
TACAGGGAGGGTTTCGTTGACCCCGCCACCGGCAATCTGCGCAGAGTGCC
GCTGGAAATTCTGCGCGTTGAAAAGAGGGGGAACGCTCCGATCTATGGCG
CGGCGCGCAATACC
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