mRNA_H-paniculata_contig1296.1853.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 302 bits (773), Expect = 4.120e-96 Identity = 147/239 (61.51%), Postives = 181/239 (75.73%), Query Frame = 1 Query: 265 TEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDD-NCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYT---KEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEVL 969 TEAL+V P+ TVVS RPY V W GAS RFEIDL YCGSYS+CF++ CGF L N+C EG GC D V PEPLGG S+ GYR+RIA+VG DT RCSDDFYLMSS DAP GE+GGP+I+V++PT+D++AI+GE YTVEFDYDNGFG +GRFKIDLY ++GAGDCG WV S+CDKP GC D+ G+Y++V+P ++ GMY+IRVGLFGDD++Y+CS FEV+ Sbjct: 23 TEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVV 259
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 291 bits (744), Expect = 3.520e-92 Identity = 146/243 (60.08%), Postives = 179/243 (73.66%), Query Frame = 1 Query: 265 TEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFD--DNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEVLPLGEGV 987 TEALRV P+ TVVSD PY V W GASP RFEIDL YCGSYSFCF+ D CGF + NLC EG D C D V +PEP+ G S++GYRVRI KVG +T RCSD+FYLMSS DA ++ GP+++V++P+S ++A++G YTVEFDYDNGFG GRFKIDLY EG GDCG WV S+CDKP GC DT G+YDIV+P+ ++ GMY+IRVGLFGDDSV++CS FEV+P +G+ Sbjct: 22 TEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGD-DACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVG--TETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVPETQGL 258
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 283 bits (725), Expect = 4.400e-89 Identity = 135/243 (55.56%), Postives = 175/243 (72.02%), Query Frame = 1 Query: 265 TEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDD--NCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEVLPLGEGV 987 TEALRV P+ +V S RPY V W GA RFE+DL YCGSYSFCF + +CGF + N+C E D C + D V PEP+ G S+NGYRVRI++VG D RCS+DFYL++S D + GE GGP+++V++P ++++A++GE YTVEFDYDNGFG +GRFKIDLY EG GDCG WV S+CDKP GC+D+ G+YD+V+P ++ GMY+IRVGLFGDDS+Y+CS FE+ GV Sbjct: 22 TEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEAD-DACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVG--TDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGV 261
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 263 bits (672), Expect = 3.770e-81 Identity = 131/236 (55.51%), Postives = 168/236 (71.19%), Query Frame = 1 Query: 262 ATEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEVL 969 A AL V P+EG VV+ R YTVEWTG R+EIDL YCGS C +D CG + LC G DGC D +G YD++MPEP+ G S +GY+VR+A V + D+ CSD+FYLM+ +AP G+ GGP + V SP+S A +GEEYTVEFDYDNG G++VGRF IDLY+ G+GDCG ++ ++CDKP GCKD+ G+YD+ +P+ A+AGMY IRVG F DDSVY CS+EFE+L Sbjct: 4 AASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDECGDWVTALC-PYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 255 bits (652), Expect = 2.100e-78 Identity = 127/233 (54.51%), Postives = 163/233 (69.96%), Query Frame = 1 Query: 271 ALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEVL 969 AL V P+ G VVS R YTVEW+G RFEIDL YC S C +D CG + LC G DGC D +G YD++MPEP+ G S +GY+VR+A V + D+ CSD+FYLM+ DAP + GGP + V SP++ A +GEEYTVEFDYDNG G++VGRF IDLY G+GDCG ++ ++CDKP GCKD+ G+YD+ +P+ A+AGMY IRVG F D+SVY CS+EFE+L Sbjct: 20 ALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDECGEWVTALC-PYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVD-DEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL 247
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 249 bits (637), Expect = 4.870e-76 Identity = 126/235 (53.62%), Postives = 164/235 (69.79%), Query Frame = 1 Query: 262 ATEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEV 966 A AL+V+ PS+G+TV++DR YTVEWTG S RFEIDL YCGS C +D+CG + LC G DGC D +G YD++MPEP+ G S +GY+VR+ + D CSD+FYL++S +AP G+E GP+++V SP S +A + EYTVEFDYDNG G++V RF IDLY +G GDCG +V SICDKP GCKD+ G+YD+ +P AG Y+IRV F DDS+YSCS F + Sbjct: 16 AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALC-PYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEED-ADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 243 bits (619), Expect = 1.650e-73 Identity = 125/236 (52.97%), Postives = 161/236 (68.22%), Query Frame = 1 Query: 262 ATEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEVL 969 A AL V PS + VV+DR YTVEWTGA G RFEIDL +CGS C +D+CG + LC G +GC D +G YD++MPEP+ G S++GY+VR+ V + D++ CSD FYLM+S+DAP G E G + V SP A +GEEYTVEFDYDNG G+ V RF IDLY +G GDCG +V SICDKP+ GCKD+ G+YD+ +P +AG Y+IRVG F D+ +Y CS F ++ Sbjct: 16 AANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGS--MCMEDSCGDWVTALC-PYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVS-DEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 230 bits (587), Expect = 8.880e-69 Identity = 121/236 (51.27%), Postives = 161/236 (68.22%), Query Frame = 1 Query: 259 SATEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEV 966 SA AL V +P G++V++DR YTVEWTG + G RFEIDL YC S FC DD CG + LC G DGC D G YD+IMPEP+ G +S+GY+V + D + CSDDF L++S+DAP+ GE G S+ V SP+ A++GE YTVE+DY+NGFG++ RF +DLY G GDCG +V ++CD+P+ GC D+ G+YD+ +P AGMY IRVG+F D+ +Y CS+ FEV Sbjct: 15 SAANALEVVSPDGGISVLADRAYTVEWTGTTTG-RFEIDLYYCNS--FCMDDVCGDWVTALC-PYGADGCP-DSAGDYDIIMPEPMSG-TSSGYKVMVKNAEDESD-MGCSDDFTLIASEDAPEAGEMG-YSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 228 bits (582), Expect = 4.610e-68 Identity = 120/236 (50.85%), Postives = 159/236 (67.37%), Query Frame = 1 Query: 262 ATEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEVL 969 A AL V +P+ G VV+D YTVEWTGA+ G R++IDL YCGS C +D CG + LC G DGC D G YDV+MPEP+ G +S+GY+V + D CS DF L++S +AP + G + V SP+ A++G EYTVEFDYDNG G++V RF IDLY+ G+GDCG +V +ICDKP+ GCKD+ G+YD+V+P ++GMY IRVG+F DD VY CS+ FE++ Sbjct: 16 AANALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSV--CMEDECGDWVTALCPYGD-DGCP-DTQGDYDVVMPEPMDG-TSSGYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGAY-VSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 212 bits (539), Expect = 8.160e-62 Identity = 107/197 (54.31%), Postives = 138/197 (70.05%), Query Frame = 1 Query: 262 ATEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDT 852 A AL+V+ PS+G+TV++DR YTVEWTG S RFEIDL YCGS C +D+CG + LC G DGC D +G YD++MPEP+ G S +GY+VR+ + D CSD+FYL++S +AP G+E GP+++V SP S +A + EYTVEFDYDNG G+ V RF IDLY +G GDCG +V SICDKP GCKD+ Sbjct: 17 AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALC-PYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEED-ADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1296.1853.1 >prot_H-paniculata_contig1296.1853.1 ID=prot_H-paniculata_contig1296.1853.1|Name=mRNA_H-paniculata_contig1296.1853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp MTFSSAAIVAAVVSILTSATEALRVTAPSEGMTVVSDRPYTVEWTGASPGback to top mRNA from alignment at H-paniculata_contig1296:23142..26720+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1296.1853.1 ID=mRNA_H-paniculata_contig1296.1853.1|Name=mRNA_H-paniculata_contig1296.1853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3579bp|location=Sequence derived from alignment at H-paniculata_contig1296:23142..26720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1296:23142..26720+ >mRNA_H-paniculata_contig1296.1853.1 ID=mRNA_H-paniculata_contig1296.1853.1|Name=mRNA_H-paniculata_contig1296.1853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig1296:23142..26720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |