mRNA_H-paniculata_contig1296.1853.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1296.1853.1
Unique NamemRNA_H-paniculata_contig1296.1853.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 4.120e-96
Identity = 147/239 (61.51%), Postives = 181/239 (75.73%), Query Frame = 1
Query:  265 TEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDD-NCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYT---KEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEVL 969
            TEAL+V  P+   TVVS RPY V W GAS   RFEIDL YCGSYS+CF++  CGF L N+C EG   GC    D    V  PEPLGG S+ GYR+RIA+VG   DT RCSDDFYLMSS DAP  GE+GGP+I+V++PT+D++AI+GE YTVEFDYDNGFG  +GRFKIDLY    ++GAGDCG WV S+CDKP  GC D+ G+Y++V+P  ++ GMY+IRVGLFGDD++Y+CS  FEV+
Sbjct:   23 TEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVV 259          
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 3.520e-92
Identity = 146/243 (60.08%), Postives = 179/243 (73.66%), Query Frame = 1
Query:  265 TEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFD--DNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEVLPLGEGV 987
            TEALRV  P+   TVVSD PY V W GASP  RFEIDL YCGSYSFCF+  D CGF + NLC EG  D C    D    V +PEP+ G S++GYRVRI KVG   +T RCSD+FYLMSS DA    ++ GP+++V++P+S ++A++G  YTVEFDYDNGFG   GRFKIDLY  EG GDCG WV S+CDKP  GC DT G+YDIV+P+ ++ GMY+IRVGLFGDDSV++CS  FEV+P  +G+
Sbjct:   22 TEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGD-DACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVG--TETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVPETQGL 258          
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 4.400e-89
Identity = 135/243 (55.56%), Postives = 175/243 (72.02%), Query Frame = 1
Query:  265 TEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDD--NCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEVLPLGEGV 987
            TEALRV  P+   +V S RPY V W GA    RFE+DL YCGSYSFCF +  +CGF + N+C E   D C +  D    V  PEP+ G S+NGYRVRI++VG   D  RCS+DFYL++S D  + GE GGP+++V++P ++++A++GE YTVEFDYDNGFG  +GRFKIDLY  EG GDCG WV S+CDKP  GC+D+ G+YD+V+P  ++ GMY+IRVGLFGDDS+Y+CS  FE+     GV
Sbjct:   22 TEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEAD-DACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVG--TDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGV 261          
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 3.770e-81
Identity = 131/236 (55.51%), Postives = 168/236 (71.19%), Query Frame = 1
Query:  262 ATEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEVL 969
            A  AL V  P+EG  VV+ R YTVEWTG     R+EIDL YCGS   C +D CG  +  LC   G DGC  D +G YD++MPEP+ G S +GY+VR+A V  + D+  CSD+FYLM+  +AP  G+ GGP + V SP+S   A +GEEYTVEFDYDNG G++VGRF IDLY+  G+GDCG ++ ++CDKP  GCKD+ G+YD+ +P+ A+AGMY IRVG F DDSVY CS+EFE+L
Sbjct:    4 AASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDECGDWVTALC-PYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234          
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 2.100e-78
Identity = 127/233 (54.51%), Postives = 163/233 (69.96%), Query Frame = 1
Query:  271 ALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEVL 969
            AL V  P+ G  VVS R YTVEW+G     RFEIDL YC S   C +D CG  +  LC   G DGC  D +G YD++MPEP+ G S +GY+VR+A V  + D+  CSD+FYLM+  DAP   + GGP + V SP++   A +GEEYTVEFDYDNG G++VGRF IDLY   G+GDCG ++ ++CDKP  GCKD+ G+YD+ +P+ A+AGMY IRVG F D+SVY CS+EFE+L
Sbjct:   20 ALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDECGEWVTALC-PYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVD-DEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL 247          
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 4.870e-76
Identity = 126/235 (53.62%), Postives = 164/235 (69.79%), Query Frame = 1
Query:  262 ATEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEV 966
            A  AL+V+ PS+G+TV++DR YTVEWTG S   RFEIDL YCGS   C +D+CG  +  LC   G DGC  D +G YD++MPEP+ G S +GY+VR+  +    D   CSD+FYL++S +AP  G+E GP+++V SP S  +A +  EYTVEFDYDNG G++V RF IDLY  +G GDCG +V SICDKP  GCKD+ G+YD+ +P    AG Y+IRV  F DDS+YSCS  F +
Sbjct:   16 AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALC-PYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEED-ADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245          
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 1.650e-73
Identity = 125/236 (52.97%), Postives = 161/236 (68.22%), Query Frame = 1
Query:  262 ATEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEVL 969
            A  AL V  PS  + VV+DR YTVEWTGA  G RFEIDL +CGS   C +D+CG  +  LC   G +GC  D +G YD++MPEP+ G S++GY+VR+  V  + D++ CSD FYLM+S+DAP  G E G  + V SP     A +GEEYTVEFDYDNG G+ V RF IDLY  +G GDCG +V SICDKP+ GCKD+ G+YD+ +P   +AG Y+IRVG F D+ +Y CS  F ++
Sbjct:   16 AANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGS--MCMEDSCGDWVTALC-PYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVS-DEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245          
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 8.880e-69
Identity = 121/236 (51.27%), Postives = 161/236 (68.22%), Query Frame = 1
Query:  259 SATEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEV 966
            SA  AL V +P  G++V++DR YTVEWTG + G RFEIDL YC S  FC DD CG  +  LC   G DGC  D  G YD+IMPEP+ G +S+GY+V +       D + CSDDF L++S+DAP+ GE G  S+ V SP+    A++GE YTVE+DY+NGFG++  RF +DLY   G GDCG +V ++CD+P+ GC D+ G+YD+ +P    AGMY IRVG+F D+ +Y CS+ FEV
Sbjct:   15 SAANALEVVSPDGGISVLADRAYTVEWTGTTTG-RFEIDLYYCNS--FCMDDVCGDWVTALC-PYGADGCP-DSAGDYDIIMPEPMSG-TSSGYKVMVKNAEDESD-MGCSDDFTLIASEDAPEAGEMG-YSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242          
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 4.610e-68
Identity = 120/236 (50.85%), Postives = 159/236 (67.37%), Query Frame = 1
Query:  262 ATEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEEFEVL 969
            A  AL V +P+ G  VV+D  YTVEWTGA+ G R++IDL YCGS   C +D CG  +  LC  G  DGC  D  G YDV+MPEP+ G +S+GY+V +       D   CS DF L++S +AP   + G   + V SP+    A++G EYTVEFDYDNG G++V RF IDLY+  G+GDCG +V +ICDKP+ GCKD+ G+YD+V+P   ++GMY IRVG+F DD VY CS+ FE++
Sbjct:   16 AANALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSV--CMEDECGDWVTALCPYGD-DGCP-DTQGDYDVVMPEPMDG-TSSGYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGAY-VSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243          
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 8.160e-62
Identity = 107/197 (54.31%), Postives = 138/197 (70.05%), Query Frame = 1
Query:  262 ATEALRVTAPSEGMTVVSDRPYTVEWTGASPGARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMPEPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSIKVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGWVGSICDKPAAGCKDT 852
            A  AL+V+ PS+G+TV++DR YTVEWTG S   RFEIDL YCGS   C +D+CG  +  LC   G DGC  D +G YD++MPEP+ G S +GY+VR+  +    D   CSD+FYL++S +AP  G+E GP+++V SP S  +A +  EYTVEFDYDNG G+ V RF IDLY  +G GDCG +V SICDKP  GCKD+
Sbjct:   17 AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALC-PYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEED-ADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1296.1853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LEQ9_ECTSI4.120e-9661.51EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
D7FN59_ECTSI3.520e-9260.08EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KPZ5_9PHAE4.400e-8955.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LI46_ECTSI3.770e-8155.51EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFT9_9PHAE2.100e-7854.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRG9_9PHAE4.870e-7653.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI1.650e-7352.97EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
A0A6H5JY62_9PHAE8.880e-6951.27GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7G3E8_ECTSI4.610e-6850.85Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7FH21_ECTSI8.160e-6254.31Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1296contigH-paniculata_contig1296:23142..26720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size1564
Cds size783
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.083135-UTR-H-paniculata_contig1296:23141..233481622929022.083135-UTR-H-paniculata_contig1296:23141..23348Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1296 23142..23348 +
1691480702.7686417-UTR-H-paniculata_contig1296:23141..233481691480702.7686417-UTR-H-paniculata_contig1296:23141..23348Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1296 23142..23348 +
1622929022.1758816-UTR-H-paniculata_contig1296:26146..267201622929022.1758816-UTR-H-paniculata_contig1296:26146..26720Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1296 26147..26720 +
1691480702.8284142-UTR-H-paniculata_contig1296:26146..267201691480702.8284142-UTR-H-paniculata_contig1296:26146..26720Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1296 26147..26720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.095375-CDS-H-paniculata_contig1296:23348..234611622929022.095375-CDS-H-paniculata_contig1296:23348..23461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1296 23349..23461 +
1691480702.7788754-CDS-H-paniculata_contig1296:23348..234611691480702.7788754-CDS-H-paniculata_contig1296:23348..23461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1296 23349..23461 +
1622929022.1096764-CDS-H-paniculata_contig1296:24765..248561622929022.1096764-CDS-H-paniculata_contig1296:24765..24856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1296 24766..24856 +
1691480702.7883127-CDS-H-paniculata_contig1296:24765..248561691480702.7883127-CDS-H-paniculata_contig1296:24765..24856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1296 24766..24856 +
1622929022.1252236-CDS-H-paniculata_contig1296:25096..254021622929022.1252236-CDS-H-paniculata_contig1296:25096..25402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1296 25097..25402 +
1691480702.8050308-CDS-H-paniculata_contig1296:25096..254021691480702.8050308-CDS-H-paniculata_contig1296:25096..25402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1296 25097..25402 +
1622929022.142109-CDS-H-paniculata_contig1296:25594..257301622929022.142109-CDS-H-paniculata_contig1296:25594..25730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1296 25595..25730 +
1691480702.813116-CDS-H-paniculata_contig1296:25594..257301691480702.813116-CDS-H-paniculata_contig1296:25594..25730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1296 25595..25730 +
1622929022.1590405-CDS-H-paniculata_contig1296:26009..261461622929022.1590405-CDS-H-paniculata_contig1296:26009..26146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1296 26010..26146 +
1691480702.8209553-CDS-H-paniculata_contig1296:26009..261461691480702.8209553-CDS-H-paniculata_contig1296:26009..26146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1296 26010..26146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1296.1853.1prot_H-paniculata_contig1296.1853.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1296 23349..26146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1296.1853.1

>prot_H-paniculata_contig1296.1853.1 ID=prot_H-paniculata_contig1296.1853.1|Name=mRNA_H-paniculata_contig1296.1853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp
MTFSSAAIVAAVVSILTSATEALRVTAPSEGMTVVSDRPYTVEWTGASPG
ARFEIDLTYCGSYSFCFDDNCGFLLENLCIEGGVDGCALDLDGGYDVIMP
EPLGGGSSNGYRVRIAKVGGNLDTVRCSDDFYLMSSQDAPKGGEEGGPSI
KVLSPTSDSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTKEGAGDCGGW
VGSICDKPAAGCKDTTGNYDIVMPQVAKAGMYRIRVGLFGDDSVYSCSEE
FEVLPLGEGV*
back to top

mRNA from alignment at H-paniculata_contig1296:23142..26720+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1296.1853.1 ID=mRNA_H-paniculata_contig1296.1853.1|Name=mRNA_H-paniculata_contig1296.1853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3579bp|location=Sequence derived from alignment at H-paniculata_contig1296:23142..26720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTCAGTCGTCCGCGATCGACCTAGACACACACGCGACACCAAGAAGA ACGGCCGTAAAACACAGCACCACCCACAATCAGCACGGAAGATCGGAGAT CGAGAACATCAAGATTTCTTGGGCGTTTCTGTGCTTGCACACATCTCTCG CTGCAGCCTGCGACCAAATATTGCTGTGTGTATTTATTCCCTATCTCACA ACACAGCATGACTTTCTCGAGCGCGGCGATCGTGGCTGCCGTGGTGAGCA TACTGACTAGCGCTACTGAAGCACTGCGTGTTACGGCACCTTCGGAGGGT ATGACTGTGGTCTCGGACAGGTATGTGGTAGTGGGTCATAGGTCACGCAC GGTGTAAGAAAACGAAGATAGGCGTTGTTATTGTAGCGCTATTTCGTGTA GTGGAGTTCTGTATCGTAATTTGAGAACAGTTTTAGCGATTTATTTGGAC ACGTGTCGTACTGACTCATGTATGGGATAGGATTGCGTGGTGTGGTCTTT GGTACATCTGCGGCACCAATGTGAAGCTACATCTCGATTGCCTTTTTTGT CTCCTTGGGCTGTTGCTCGTATTGTAGTGGGATCACAGCTGTGAACGTCA CTTCGTCGACGTGTAGAAAGTGTAATATTTGGAAAAGAGCAAATCTCCTG TTGTTAGTGTAAGGGATCGTGTATCCCATTTTATATGCTTTTGGGACTTC CGCTTGGAGGAAAGACAAATGTCGACGGCCTATCCATTAGCTGCTTGTAC GTCGGATTCCTGCTATAGTTATCGTCCCTTGCTCAACCCTCGAGCGAAAG AGAAATGCGATGATGGGTGGTGGTTAACTAATCCCATGGTGCACACACTA CCCGGCACCACTTGACCCCTAGAGCGGGATCCTGTGATGTCCGAACGCTT TTTTTTTCGTTCAAATGTTTTAGATATATTACTGGTGAGCACTTTTCTCG GCAGAAATGGCGAAATCTGATAACCATGGAATCAGAGGCGTAACGCAAAA GAGAGAGCAAATTTCCGGATTTCAACATTCTCAAAGTGTTTCTTTCTGTT GATTGGTCCAAAGTTTCCGTTCGATCTTATCTCGAATTTCGAACTCCTTT TTTCTTTTTCCGCTTTTCGACGTTCCACTTCAAATTCCCGGACTTGGTTG TTTCAGTATTTCCGCCCAAAACGCGCTCTCTATTTATGGTGATGACCCTC AATAAATCGAACCAAAAGAAGAGCATATAACCATACATGAAAGCATTACA GGATCCCAAAGTTGTGTAAGGGCTATTTGGTCTAAACGGTTGGCATTTAG TACAGCAAAAGCCCCGGACGAGTCACGCATTGCAAGGGCGAAAGCAGTCG CGTCGCGAATCTCAGGGCTAGTTGCGTTCTTCAAAATGGAGTACAGACAT CATCACCCTGGAGAAGTCGTGGCCCTGTTCTAGTTTTTTTATATATCCTG TCCCCAATTTCTAATATCAAAATCATCGCCTAACTCTGATTTCGGGTGAC GTTGTACAGTAAGGTTCGAATCTTATCCCAGAAGGACTTCGTTTTTCATT TCATTGGGTCACGTACTGAATCATGTTCTTGAGCCCACCTTTGCCGCGTT ATTGCCTCTCCTGCTTGGTTACAGGCCGTACACAGTGGAGTGGACAGGCG CCTCGCCAGGCGCGCGATTCGAGATAGACCTGACATATTGTGGCTCCTAC TCATTCTGCTTTGATGTAAGTGTTGGAAGTGCTGTTGACAATGACATAGG AAAACACACTACATCACATACATATGTCTGACCTGAGCTCTACGCTTGCT TTTTCAATTTCAGCTGTATCGATCTTTTTCAACCCCAGGTTTTTACGTGA CCCCGCGACGAACTCTTCCAAAGAAATCAGTGAATACATCAAATTCACCT CCGGCCCCATTCCCGCTCTACTGTGTCTACCTTCAAACCCACAACACAAA CACAGGATAACTGCGGCTTCCTCCTAGAGAACCTGTGCATTGAGGGAGGG GTCGATGGTTGTGCTCTGGACCTGGACGGGGGCTACGATGTCATCATGCC AGAGCCATTGGGAGGGGGATCGAGCAACGGCTACAGGGTGCGCATCGCCA AGGTCGGAGGGAACTTGGACACGGTTCGGTGCTCCGACGACTTTTACCTG ATGTCATCGCAAGACGCTCCAAAAGGCGGCGAAGAAGGCGGACCGTCGAT TAAAGTGCTTTCTCCGACGTCAGATTCGGTGGCGATCTCTGGGGAGGAGT ACACAGTGGAGGTGGGCGTTGAGTTGTACTGTAGTTCCTGTGGAGCATGT ATGTAGGCGAGGCGTGCCGTCTTAGTATTGTGTCTCACAGGTTCGAATTC ACCATAGGCTCATCGTTGCTCAGTTGGGCCCGATCTCGTTTCCTGCGACG TTTGTCTCTTTGTATGTCACTCGGTCATGACCTGGTCGGAATACATTGTC CAGTTCGACTACGACAACGGGTTCGGCAACACGGTGGGGCGGTTCAAGAT CGATTTGTACACGAAAGAGGGAGCCGGCGACTGTGGGGGCTGGGTTGGTT CCATCTGCGACAAGCCCGCGGCCGGCTGCAAAGATACCAGTGAGTGGTCG CTGTCAGCCAATATGACAAAGTGACAGGTTGGTTGTCAGAAGGAATCGGA GTGGACGGGAACAATACAGATGGTGTCGAGGGCAGCAATGGCGGATGATA TCAAACTCGATATATAGCGCCGCATGGCATGTTTAGCGTTCGTGTGTTTC GTTGGTCCAAGGAGTCCTAGCAAGCGTTTACCGTGGACGAGATGTTCGAT AAACATGCGCTGACAAAGCTGGTTTCCCGATGATTCTGCTTGTTCTTTCT TGCTCGTTCTCGGAACAGCTGGAAACTACGACATCGTGATGCCGCAAGTG GCCAAGGCCGGCATGTACAGGATCCGCGTGGGGCTGTTCGGCGATGATTC CGTATATTCTTGCTCTGAGGAGTTCGAAGTGCTGCCTTTGGGCGAAGGTG TCTGATTGTAGACCATGATGTAGCTGAATGGTCCGGTGTTTGTTTAGTCC CAGGTAGCAATAGAATATGTGTCGAATAGGGTAGGTTTTATGTTTTAGTC GTCGAAGTTGTTTGTTTTGTGTTTGTAGCAGTACTGCACGTTACGAGATA GTGCACTACTCCTAGTAGGAAGTCGGAGTATGACTGCAGCCGTTTGTGTG TAAAGTGGTGATTTGCGCGAGGTATTTCGTATTTCTCTCGCGATTGGCAT GGCGTAAGTCGTTCTACAGCATGGTATTTGTATGCTGTCCGAGAAAAAGA GTAGCAGCCCTTTGGTATTTTTGCAGTTGTGTGGAGGTTGATGTGATGTG TACCCTTGGACAGAGTAGAAAATGGTTCCCTTGGGTTCCTGTGTGTTGTG ATTGTTATATGGATGTAGATGTGAAGCCAACAGCTGATGAAGAAGGCGGT AAAAGAAGCGTTGCCGCTCGATCCTTTGTTCCTGGACCTTGATTTTGTGT GAAATTTATTTTTCGAAAGCAGTTGTAGTTGGACCATCACTCTCCCTTTA ATGTGAAGGTCCGTGAATAACAATTCCCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1296:23142..26720+

>mRNA_H-paniculata_contig1296.1853.1 ID=mRNA_H-paniculata_contig1296.1853.1|Name=mRNA_H-paniculata_contig1296.1853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig1296:23142..26720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTTCTCGAGCGCGGCGATCGTGGCTGCCGTGGTGAGCATACTGAC
TAGCGCTACTGAAGCACTGCGTGTTACGGCACCTTCGGAGGGTATGACTG
TGGTCTCGGACAGATGACTTTCTCGAGCGCGGCGATCGTGGCTGCCGTGG
TGAGCATACTGACTAGCGCTACTGAAGCACTGCGTGTTACGGCACCTTCG
GAGGGTATGACTGTGGTCTCGGACAGGCCGTACACAGTGGAGTGGACAGG
CGCCTCGCCAGGCGCGCGATTCGAGATAGACCTGACATATTGTGGCTCCT
ACTCATTCTGCTTTGATGCCGTACACAGTGGAGTGGACAGGCGCCTCGCC
AGGCGCGCGATTCGAGATAGACCTGACATATTGTGGCTCCTACTCATTCT
GCTTTGATGATAACTGCGGCTTCCTCCTAGAGAACCTGTGCATTGAGGGA
GGGGTCGATGGTTGTGCTCTGGACCTGGACGGGGGCTACGATGTCATCAT
GCCAGAGCCATTGGGAGGGGGATCGAGCAACGGCTACAGGGTGCGCATCG
CCAAGGTCGGAGGGAACTTGGACACGGTTCGGTGCTCCGACGACTTTTAC
CTGATGTCATCGCAAGACGCTCCAAAAGGCGGCGAAGAAGGCGGACCGTC
GATTAAAGTGCTTTCTCCGACGTCAGATTCGGTGGCGATCTCTGGGGAGG
AGTACACAGTGGAGGATAACTGCGGCTTCCTCCTAGAGAACCTGTGCATT
GAGGGAGGGGTCGATGGTTGTGCTCTGGACCTGGACGGGGGCTACGATGT
CATCATGCCAGAGCCATTGGGAGGGGGATCGAGCAACGGCTACAGGGTGC
GCATCGCCAAGGTCGGAGGGAACTTGGACACGGTTCGGTGCTCCGACGAC
TTTTACCTGATGTCATCGCAAGACGCTCCAAAAGGCGGCGAAGAAGGCGG
ACCGTCGATTAAAGTGCTTTCTCCGACGTCAGATTCGGTGGCGATCTCTG
GGGAGGAGTACACAGTGGAGTTCGACTACGACAACGGGTTCGGCAACACG
GTGGGGCGGTTCAAGATCGATTTGTACACGAAAGAGGGAGCCGGCGACTG
TGGGGGCTGGGTTGGTTCCATCTGCGACAAGCCCGCGGCCGGCTGCAAAG
ATACCATTCGACTACGACAACGGGTTCGGCAACACGGTGGGGCGGTTCAA
GATCGATTTGTACACGAAAGAGGGAGCCGGCGACTGTGGGGGCTGGGTTG
GTTCCATCTGCGACAAGCCCGCGGCCGGCTGCAAAGATACCACTGGAAAC
TACGACATCGTGATGCCGCAAGTGGCCAAGGCCGGCATGTACAGGATCCG
CGTGGGGCTGTTCGGCGATGATTCCGTATATTCTTGCTCTGAGGAGTTCG
AAGTGCTGCCTTTGGGCGAAGGTGTCTGACTGGAAACTACGACATCGTGA
TGCCGCAAGTGGCCAAGGCCGGCATGTACAGGATCCGCGTGGGGCTGTTC
GGCGATGATTCCGTATATTCTTGCTCTGAGGAGTTCGAAGTGCTGCCTTT
GGGCGAAGGTGTCTGA
back to top