mRNA_H-paniculata_contig12956.1851.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12956.1851.1
Unique NamemRNA_H-paniculata_contig12956.1851.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12956.1851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12956contigH-paniculata_contig12956:4690..5625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size274
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12956.1851.1prot_H-paniculata_contig12956.1851.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12956 4692..5625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.809849-CDS-H-paniculata_contig12956:4691..47881622929021.809849-CDS-H-paniculata_contig12956:4691..4788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12956 4692..4788 -
1691480702.613424-CDS-H-paniculata_contig12956:4691..47881691480702.613424-CDS-H-paniculata_contig12956:4691..4788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12956 4692..4788 -
1622929021.8264909-CDS-H-paniculata_contig12956:5162..52381622929021.8264909-CDS-H-paniculata_contig12956:5162..5238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12956 5163..5238 -
1691480702.6230884-CDS-H-paniculata_contig12956:5162..52381691480702.6230884-CDS-H-paniculata_contig12956:5162..5238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12956 5163..5238 -
1622929021.8453088-CDS-H-paniculata_contig12956:5528..56251622929021.8453088-CDS-H-paniculata_contig12956:5528..5625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12956 5529..5625 -
1691480702.6325967-CDS-H-paniculata_contig12956:5528..56251691480702.6325967-CDS-H-paniculata_contig12956:5528..5625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12956 5529..5625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12956.1851.1

>prot_H-paniculata_contig12956.1851.1 ID=prot_H-paniculata_contig12956.1851.1|Name=mRNA_H-paniculata_contig12956.1851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
ASEVGEGLQSATPLTATPATASSTSMTSPSPPEPFPEISPHRRGYCVRHH
AGPARTPSGTSSTPSFSSTGDRKRANVGPKADGHRTVSEV
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mRNA from alignment at H-paniculata_contig12956:4690..5625-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12956.1851.1 ID=mRNA_H-paniculata_contig12956.1851.1|Name=mRNA_H-paniculata_contig12956.1851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=936bp|location=Sequence derived from alignment at H-paniculata_contig12956:4690..5625- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGCGAGGTCGGCGAGGGTCTCCAGTCAGCTACTCCTCTCACCGCCAC
GCCGGCAACCGCGAGCAGCACCTCCATGACCTCTCCATCCCCGCCAGGTG
CGTACGGAACCGCCAGCATTACTCGCAATCGACCGCTCAACAACGTGCAC
CATATCCGAAACAAAGAGGCAGTAGTGTCGGGCCATCTTGGTGTAGTGGC
TCTAGGCGTTTGCGCTCCGACGTTACTGCATGTATATACACGTAGAAACG
TCGCACACACTCACGATATGCCTCAAGTCGTTATGATCAATAGTCGTACC
CTCGCTTTTCCCCCGCCGCCTCGCCGCCCTGCCCCGCCCCCGTCTCGCCT
GTCTTTCGACAACTGACACGCCTCCACCTTTCTTTAGAGCCCTTTCCCGA
GATCTCGCCACACCGCCGCGGATACTGCGTGCGGCATCACGCCGGCCCTG
CACGGACGCCTAGGTAAGGGTACTCGGTGATGTAAGGACGGTGTGATATA
AGGCGAATTTCCCGCTCGGACTCCGGTACATGCTGGTTCGTCGTGTCGCA
CTCGAGCCGTGCCGTCCAGTAGGGCGAAGCTAATGGTAAATGTAGTATCT
CTCCGACGAACGAACAAGAGAAGTTGAACCCAATATCCTGTGTGCATTTA
CCGTCCGGACGTCAGGTGGTCCGGAGTCCCGAAGAGAGACACGGCAGAAA
AGTATAGGACGGAAATCGCAGATACCGTGTGTCCCGATAAATTCCCGGAC
GCAAGACCCAACATCACCCGTATACCCCCGCTCTCGGTGCCGTTCGATGT
TCCGTAATTTTCTCATACACTCGGTGTCCGACGTCAGCGGGACCTCGTCG
ACTCCGAGTTTCTCGTCGACGGGGGACCGCAAGCGAGCAAATGTTGGTCC
CAAGGCCGACGGTCACCGGACGGTGAGCGAGGTCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig12956:4690..5625-

>mRNA_H-paniculata_contig12956.1851.1 ID=mRNA_H-paniculata_contig12956.1851.1|Name=mRNA_H-paniculata_contig12956.1851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig12956:4690..5625- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGCGAGGTCGGCGAGGGTCTCCAGTCAGCTACTCCTCTCACCGCCAC
GCCGGCAACCGCGAGCAGCACCTCCATGACCTCTCCATCCCCGCCAGGCG
AGCGAGGTCGGCGAGGGTCTCCAGTCAGCTACTCCTCTCACCGCCACGCC
GGCAACCGCGAGCAGCACCTCCATGACCTCTCCATCCCCGCCAGAGCCCT
TTCCCGAGATCTCGCCACACCGCCGCGGATACTGCGTGCGGCATCACGCC
GGCCCTGCACGGACGCCTAGAGCCCTTTCCCGAGATCTCGCCACACCGCC
GCGGATACTGCGTGCGGCATCACGCCGGCCCTGCACGGACGCCTAGCGGG
ACCTCGTCGACTCCGAGTTTCTCGTCGACGGGGGACCGCAAGCGAGCAAA
TGTTGGTCCCAAGGCCGACGGTCACCGGACGGTGAGCGAGGTCCGGGACC
TCGTCGACTCCGAGTTTCTCGTCGACGGGGGACCGCAAGCGAGCAAATGT
TGGTCCCAAGGCCGACGGTCACCGGACGGTGAGCGAGGTC
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