mRNA_H-paniculata_contig12956.1850.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12956.1850.1
Unique NamemRNA_H-paniculata_contig12956.1850.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12956.1850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12956contigH-paniculata_contig12956:1962..2457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size123
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.7529361-CDS-H-paniculata_contig12956:1963..20061622929021.7529361-CDS-H-paniculata_contig12956:1963..2006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12956 1964..2006 -
1691480702.58737-CDS-H-paniculata_contig12956:1963..20061691480702.58737-CDS-H-paniculata_contig12956:1963..2006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12956 1964..2006 -
1622929021.7677145-CDS-H-paniculata_contig12956:2380..24571622929021.7677145-CDS-H-paniculata_contig12956:2380..2457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12956 2381..2457 -
1691480702.600675-CDS-H-paniculata_contig12956:2380..24571691480702.600675-CDS-H-paniculata_contig12956:2380..2457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12956 2381..2457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12956.1850.1prot_H-paniculata_contig12956.1850.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12956 1964..2457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12956.1850.1

>prot_H-paniculata_contig12956.1850.1 ID=prot_H-paniculata_contig12956.1850.1|Name=mRNA_H-paniculata_contig12956.1850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=40bp
EPFPEIPPHLRKYCVRHETLPAWPPSATSSTPSLSSTGDR
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mRNA from alignment at H-paniculata_contig12956:1962..2457-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12956.1850.1 ID=mRNA_H-paniculata_contig12956.1850.1|Name=mRNA_H-paniculata_contig12956.1850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=496bp|location=Sequence derived from alignment at H-paniculata_contig12956:1962..2457- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCCTTCCCCGAGATTCCGCCTCACCTCCGCAAATACTGCGTGAGGCA
CGAGACCCTCCCAGCATGGCCACCTAGGTAAGGGTACTCGGTGATGTAAG
GACGGTGTGGTATATGGCGAATTTCCCGCTCGGACTCCGGTACATGCTGG
TTCGTCGTGTCGCACTCGAGCCGTGCCGTCTAGTAGGGCGAAGATAGTGG
CAAATGCAGTATCTCTCCGACGAACGAACAAGAGAAGTTGAACCCAATAT
CCTGTGTGGATTTACCGTCCGGACGTCAGCTGGTAGGGAGTCCCGAAGCG
AGACACGGCAGAACACTATAGCACAGAAATCGCAGATACCGTGTGTCCCG
ATAAATTCCCGGACGCTAGACCCAACATCACCCGTATACCCCCGCTCTCG
GTGCCGTTCGATATTCCGTCATTTTTTCATACACTCGGTGTCCGATGTCA
GCGCGACCTCATCGACCCCGAGTCTCTCGTCGACGGGGGACCGCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12956:1962..2457-

>mRNA_H-paniculata_contig12956.1850.1 ID=mRNA_H-paniculata_contig12956.1850.1|Name=mRNA_H-paniculata_contig12956.1850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at H-paniculata_contig12956:1962..2457- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCCTTCCCCGAGATTCCGCCTCACCTCCGCAAATACTGCGTGAGGCA
CGAGACCCTCCCAGCATGGCCACCTAGGAGCCCTTCCCCGAGATTCCGCC
TCACCTCCGCAAATACTGCGTGAGGCACGAGACCCTCCCAGCATGGCCAC
CTAGCGCGACCTCATCGACCCCGAGTCTCTCGTCGACGGGGGACCGCCGC
GACCTCATCGACCCCGAGTCTCTCGTCGACGGGGGACCGC
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