mRNA_H-paniculata_contig12954.1849.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12954.1849.1
Unique NamemRNA_H-paniculata_contig12954.1849.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12954.1849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12954contigH-paniculata_contig12954:5196..5518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionMannuronan C-5-epimerase
Ec32 orthologEc-27_006700.1
Exons1
Model size323
Cds size120
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12954.1849.1prot_H-paniculata_contig12954.1849.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12954 5202..5321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.655505-UTR-H-paniculata_contig12954:5195..52011622929021.655505-UTR-H-paniculata_contig12954:5195..5201Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12954 5196..5201 +
1691480702.5466952-UTR-H-paniculata_contig12954:5195..52011691480702.5466952-UTR-H-paniculata_contig12954:5195..5201Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12954 5196..5201 +
1622929021.690463-UTR-H-paniculata_contig12954:5321..55181622929021.690463-UTR-H-paniculata_contig12954:5321..5518Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12954 5322..5518 +
1691480702.5743017-UTR-H-paniculata_contig12954:5321..55181691480702.5743017-UTR-H-paniculata_contig12954:5321..5518Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12954 5322..5518 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.6729426-CDS-H-paniculata_contig12954:5201..53211622929021.6729426-CDS-H-paniculata_contig12954:5201..5321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12954 5202..5321 +
1691480702.564849-CDS-H-paniculata_contig12954:5201..53211691480702.564849-CDS-H-paniculata_contig12954:5201..5321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12954 5202..5321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12954.1849.1

>prot_H-paniculata_contig12954.1849.1 ID=prot_H-paniculata_contig12954.1849.1|Name=mRNA_H-paniculata_contig12954.1849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=40bp
MSDSFRYGVFFYRGSDEAEVSTVGRFRAMRIDRPWLVMN*
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mRNA from alignment at H-paniculata_contig12954:5196..5518+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12954.1849.1 ID=mRNA_H-paniculata_contig12954.1849.1|Name=mRNA_H-paniculata_contig12954.1849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=323bp|location=Sequence derived from alignment at H-paniculata_contig12954:5196..5518+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGTTATGTCAGACAGCTTCCGTTATGGGGTATTCTTCTACCGTGGCAG
CGACGAGGCGGAAGTGAGTACAGTAGGCCGTTTTCGGGCAATGCGCATTG
ACCGGCCTTGGTTGGTGATGAACTAACTGCCTTGGGGTTTGAACTCCCGA
ATGTTGAGGTATACGATTAAATCTTCCAGACTACGGAAGAAATCAGATTT
CGCTGTGACACAGGAGAAAGAACACATAGACTGTTGTGTTTGTGCGTATA
TCTACGGTTAGCATATACGTGGAACACTAGTAAGGAAAAACCCCGCCCGA
TATGCAGGTTAATTCGTGTACCT
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Coding sequence (CDS) from alignment at H-paniculata_contig12954:5196..5518+

>mRNA_H-paniculata_contig12954.1849.1 ID=mRNA_H-paniculata_contig12954.1849.1|Name=mRNA_H-paniculata_contig12954.1849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at H-paniculata_contig12954:5196..5518+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGACAGCTTCCGTTATGGGGTATTCTTCTACCGTGGCAGCGACGA
GGCGGAAGTGAGTACAGTAGGCCGTTTTCGGGCAATGCGCATTGACCGGC
CTTGGTTGGTGATGAACTAAATGTCAGACAGCTTCCGTTATGGGGTATTC
TTCTACCGTGGCAGCGACGAGGCGGAAGTGAGTACAGTAGGCCGTTTTCG
GGCAATGCGCATTGACCGGCCTTGGTTGGTGATGAACTAA
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