mRNA_H-paniculata_contig12952.1848.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12952.1848.1
Unique NamemRNA_H-paniculata_contig12952.1848.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12952.1848.1 vs. uniprot
Match: D7G3V5_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3V5_ECTSI)

HSP 1 Score: 348 bits (892), Expect = 5.970e-116
Identity = 172/216 (79.63%), Postives = 195/216 (90.28%), Query Frame = 1 
Query:    1 GLCPFADDPVEAATQALRERVRAQPLAIESLLKALSAWHFSQGSGRREPLVVALTGSTGTGKTETAWVLADALLKKRCRISGGTSDIPRGLIVFNGGDYMVSSKVEEYQKQIRRKLGERLQYCEGNVVVLFDELQKAAPGTLDALTESMSEHPRVTFEDGRESISVDSSRVIFLLVSDVGAEGVNAAVLRYRNRSDVVAGTLQAAVKKALDEQWER 648
            G+CPFADDPVEAA +AL++ + AQPLA+ESL  ALS+WH+S+ S R EPLVVALTGSTGTGKTETAWVLADALL KRCRI+GGT DIPRGL+V NG DYMV++KVEEYQ  IRRKLG+RL+YC GNVVVLFDELQKAAPGTLDAL E+MSEHPRVTFE G +++SVDSSRV+FLLVSDVGAEGVNAAVLRYR RSDVV G LQ+AVK++LDEQWER
Sbjct:   55 GVCPFADDPVEAARRALQDGILAQPLALESLDGALSSWHYSRQSDRYEPLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLLVLNGADYMVAAKVEEYQSLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAMSEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYRKRSDVVPGALQSAVKRSLDEQWER 270
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BLAST of mRNA_H-paniculata_contig12952.1848.1 vs. uniprot
Match: A0A7S2V512_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V512_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.100e-54
Identity = 95/217 (43.78%), Postives = 145/217 (66.82%), Query Frame = 1 
Query:    7 CPFADDPVEAATQALRERVRAQPLAIESLLKALSAWHFSQGSGRREPLVVALTGSTGTGKTETAWVLADALLKKRCRISG-GTSDIPRGLIVFNGGDYMVS--SKVEEYQKQIRRKLGERLQYCEGNVVVLFDELQKAAPGTLDALTESMSEHPRVTFEDGRESISVDSSRVIFLLVSDVGAEGVNAAVLRYRNRSDVVAGTLQAAVKKALDEQWER 648
            CP+ + P+EA    L +R++ Q  A +++L A   W   +    ++PLV+A+TG TG GKTETA VLA+ALL+KR ++S  G    P GLI+F G D+  +  + + +Y  +I+ +L   L++C GN VVLFDE+QK  PGTLD + E+M+EHP +T+    +++++D S+V+F+LVSD+G E + +  L Y +RSD+    ++A VK ALDEQWER
Sbjct:  164 CPYVEAPIEAVQGLLPQRIKGQEKAQQAILSAFQYWEMGRKQASQQPLVIAITGPTGVGKTETAHVLAEALLQKREKVSETGDRTRPAGLIIFRGEDFSDAEGAPLAQYHTEIKSRLVNHLRHCAGNAVVLFDEVQKIIPGTLDVIMEAMTEHPTLTYFADGKTVAMDCSKVVFILVSDIGWEKMVSKQLTYHDRSDIPVDEMRAVVKGALDEQWER 380
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BLAST of mRNA_H-paniculata_contig12952.1848.1 vs. uniprot
Match: A0A485KDB2_9STRA (Aste57867_2684 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDB2_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.330e-53
Identity = 93/217 (42.86%), Postives = 140/217 (64.52%), Query Frame = 1 
Query:    7 CPFADDPVEAATQALRERVRAQPLAIESLLKALSAWHFSQGSGR-REPLVVALTGSTGTGKTETAWVLADALLKKRCRISGGTSDIPRGLIVFNGGDYM--VSSKVEEYQKQIRRKLGERLQYCEGNVVVLFDELQKAAPGTLDALTESMSEHPRVTFEDGRESISVDSSRVIFLLVSDVGAEGVNAAVLRYRNRSDVVAGTLQAAVKKALDEQWER 648
            C F D P  +    L   ++AQ  A+ES++ A+ +W FS+ + +   PLV+A+TG TGTGKTET+ +LA+ L K R R+     ++P GL+VF G D+    ++ + EYQ+QI+ +L E + +C G  VV+FDE+QK  P TLD LT +MS++ ++T+  G  +  VD S VIF+L+SD+G   +   +++Y NR DV   TL+  VKKALD QW+R
Sbjct:   79 CGFVDHPSASVRTHLTSHLKAQDRALESIVGAIESWEFSRSNSKDHAPLVLAITGPTGTGKTETSNLLAEGLFKHRKRLQHSEKEVPSGLLVFRGEDFSDNYTNPLTEYQEQIKTRLAEHIYHCSGKAVVVFDEVQKVIPHTLDVLTSAMSKNAQLTYYKGGVARKVDCSNVIFVLISDIGVANMEKILIQYDNRDDVPFATLENEVKKALDAQWDR 295
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BLAST of mRNA_H-paniculata_contig12952.1848.1 vs. uniprot
Match: A0A6G0W9D6_9STRA (AAA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9D6_9STRA)

HSP 1 Score: 183 bits (464), Expect = 3.130e-52
Identity = 90/217 (41.47%), Postives = 141/217 (64.98%), Query Frame = 1 
Query:    7 CPFADDPVEAATQALRERVRAQPLAIESLLKALSAWHFSQGSGRRE-PLVVALTGSTGTGKTETAWVLADALLKKRCRISGGTSDIPRGLIVFNGGDYM--VSSKVEEYQKQIRRKLGERLQYCEGNVVVLFDELQKAAPGTLDALTESMSEHPRVTFEDGRESISVDSSRVIFLLVSDVGAEGVNAAVLRYRNRSDVVAGTLQAAVKKALDEQWER 648
            C F D P  +  + L+  ++AQ  A+E+++ A+ +W FS+ + + + PLV+A+TG TGTGKTET+ +LA+ L K+R R+     +I  GLIVF G D+    ++ V EYQ+QI+ +L E L +C G  +V+FDE+QK  P TLD LT +MS++ ++T+     +  VD S VIF+L+SD+G   +   +++Y  R ++   TL+  VKKALD QW+R
Sbjct:   74 CRFVDHPSVSVRKHLQTHLKAQDRALETIIGAIESWEFSRSNSKDQAPLVLAITGPTGTGKTETSNLLAEGLFKRRKRLEHSEKEIASGLIVFRGEDFSDNFTNPVTEYQEQIKTRLAEHLSWCSGKAIVVFDEVQKVIPHTLDVLTSAMSKNAQITYYKNGVARKVDCSNVIFVLISDIGVAAIEKLLMQYDKREEIPPATLENEVKKALDSQWKR 290
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BLAST of mRNA_H-paniculata_contig12952.1848.1 vs. uniprot
Match: A0A2D4BEI3_PYTIN (AAA domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEI3_PYTIN)

HSP 1 Score: 180 bits (456), Expect = 3.010e-51
Identity = 94/216 (43.52%), Postives = 136/216 (62.96%), Query Frame = 1 
Query:    7 CPFADDPVEAATQALRERVRAQPLAIESLLKALSAWHFSQGSGRREPLVVALTGSTGTGKTETAWVLADALLKKRCRISGGTSDIPRGLIVFNGGDY--MVSSKVEEYQKQIRRKLGERLQYCEGNVVVLFDELQKAAPGTLDALTESMSEHPRVTFEDGRESISVDSSRVIFLLVSDVGAEGVNAAVLRYRNRSDVVAGTLQAAVKKALDEQWER 648
            C F + P  A  Q L +R+RAQ  AIES+++A+ AW F      R PLV+A+TG TGTGKTET+++LA++L K+  ++S G   +  GL+VF G  +   VS+ + +Y  QI  +L E L  C G  VVLFDE+QK  P TLDAL E+MS+  +++F     + + D+S VIFLLVSD+G   +   +  Y++R +V    ++  VK ALD QW+R
Sbjct:   33 CRFVERPAHAVRQYLTQRLRAQESAIESVVEAIEAWEFHH----RAPLVLAITGPTGTGKTETSYLLAESLFKRSRKLSNGDRTVASGLLVFRGEHFGDNVSNPITQYHTQITTRLAEHLHMCSGKAVVLFDEVQKVIPHTLDALMEAMSDRAQLSFYHKGVTKTYDTSNVIFLLVSDIGVREIERVMTSYQSREEVPRSKMENVVKTALDAQWKR 244
[Close]
BLAST of mRNA_H-paniculata_contig12952.1848.1 vs. uniprot
Match: A0A7S4DD61_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD61_HETAK)

HSP 1 Score: 179 bits (454), Expect = 9.460e-51
Identity = 93/216 (43.06%), Postives = 134/216 (62.04%), Query Frame = 1 
Query:    7 CPFADDPVEAATQALRERVRAQPLAIESLLKALSAWHFSQGS--GRREPLVVALTGSTGTGKTETAWVLADALLKKRCRISGGTSDIPRGLIVFNGGDYM--VSSKVEEYQKQIRRKLGERLQYCEGNVVVLFDELQKAAPGTLDALTESMSEHPRVTFEDGRESISVDSSRVIFLLVSDVGAEGVNAAVLRYRNRSDVVAGTLQAAVKKALDEQW 642
            C + +D V A  +   +R++ Q  A ++++KA   W   +    G + PLV+A+TG TG GKTETA VL +ALL +R          P+GL+VF G D+    +  +  Y  +I+ +L   L++C GN VVLFDE+QK  PGTLD L E+M+EHP++TF    ++++VD S+VIFLLVSD+G E + +  L YR RS+V A  L+   K ALD QW
Sbjct:   45 CSYVEDTVAAIRKYYPKRIKGQQQAFDAIVKAFQYWEMGRAGAGGSKTPLVLAITGPTGVGKTETAHVLGEALLARRSARGXXXXXAPQGLLVFRGEDFSDAAAMPISRYHTEIKSRLVAHLRHCGGNAVVLFDEVQKVVPGTLDVLMEAMTEHPQLTFFSNGKAVTVDCSKVIFLLVSDIGWERMVSRQLLYRTRSEVPAEELRREAKSALDAQW 260
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BLAST of mRNA_H-paniculata_contig12952.1848.1 vs. uniprot
Match: A0A8K1C6J6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6J6_PYTOL)

HSP 1 Score: 176 bits (446), Expect = 2.050e-49
Identity = 89/217 (41.01%), Postives = 139/217 (64.06%), Query Frame = 1 
Query:    7 CPFADDPVEAATQALRERVRAQPLAIESLLKALSAWHFSQGSGR-REPLVVALTGSTGTGKTETAWVLADALLKKRCRISGGTSDIPRGLIVFNGGDYM--VSSKVEEYQKQIRRKLGERLQYCEGNVVVLFDELQKAAPGTLDALTESMSEHPRVTFEDGRESISVDSSRVIFLLVSDVGAEGVNAAVLRYRNRSDVVAGTLQAAVKKALDEQWER 648
            C F D P ++  Q L + ++AQ  A+E+++ A+ +W FS+ S + R PLV+A+TG TGTGKTE + +LA+AL K+  ++      +P GL++F G D+    ++ + EY  QI+ +L E L  C G  VV+FDE+QK  P TLD L E++SE  ++++     S ++D+S VIF+LVSD+G   +   ++ Y NR DV    L++AVK AL+ QW+R
Sbjct:   72 CVFVDKPSQSVRQYLLKHLKAQDGAVETVVAAIESWEFSRQSSKDRAPLVLAVTGPTGTGKTEMSNLLAEALFKRTKKLPNSEKLVPTGLLIFRGEDFSDNFTNPITEYHTQIKTRLSEHLHQCSGKAVVIFDEVQKVIPHTLDVLMEAVSERAQLSYYKNGVSKTIDTSNVIFVLVSDIGVAEMEHVLIDYENREDVPHSALESAVKTALNAQWKR 288
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BLAST of mRNA_H-paniculata_contig12952.1848.1 vs. uniprot
Match: A0A836C741_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C741_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.440e-49
Identity = 98/243 (40.33%), Postives = 136/243 (55.97%), Query Frame = 1 
Query:    7 CPFADDPVEAATQALRERVRAQPLAIESLLKALSAWHFSQGSGRREPLVVALTGSTGTGKTETAWVLADALLKKRCRISGGTSDIPRGLIVFNGGDYMVS------------------------------SKVEEYQKQIRRKLGERLQYCEGNVVVLFDELQKAAPGTLDALTESMSEHPRVTFEDGRESISVDSSRVIFLLVSDVGAEGVNAAVLRYRNRSDVVAGTLQAAVKKALDEQWE 645
            CP+A+D   A  + L  +++ Q LA++ ++KA  +W F + +G R+PLV+ALTG TG GKTETAW +A+ALL KR         +P G++ F+G ++ V                               + V  Y  QIRR+L + L  C G+ VVLFDELQK APGTLD L  ++   P +T   GR  ISVD S ++ LLVSD+GA  V  A+L Y  R DV    +  AV++ALD QW+
Sbjct:  606 CPYAEDAPAAVRKVLTAKIKGQSLAVDQIVKAFESWQFQRKAGLRQPLVLALTGQTGVGKTETAWQVAEALLTKR------QHGVPTGMLRFSGQEFEVVRVLXXXXXXXXXXXXXXXXXXXXXXXXADVNNVARYHDQIRRQLADVLVPCAGHAVVLFDELQKVAPGTLDVLVPALENRPMLTLPRGRSYISVDCSNLVVLLVSDIGAAAVRGAILPYARREDVPPSAIMPAVQRALDRQWK 842
[Close]
BLAST of mRNA_H-paniculata_contig12952.1848.1 vs. uniprot
Match: A0A5D6XPH0_9STRA (AAA domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPH0_9STRA)

HSP 1 Score: 174 bits (442), Expect = 7.500e-49
Identity = 89/217 (41.01%), Postives = 133/217 (61.29%), Query Frame = 1 
Query:    7 CPFADDPVEAATQALRERVRAQPLAIESLLKALSAWHFSQGSGR-REPLVVALTGSTGTGKTETAWVLADALLKKRCRISGGTSDIPRGLIVFNGGDYM--VSSKVEEYQKQIRRKLGERLQYCEGNVVVLFDELQKAAPGTLDALTESMSEHPRVTFEDGRESISVDSSRVIFLLVSDVGAEGVNAAVLRYRNRSDVVAGTLQAAVKKALDEQWER 648
            C F ++P +     L+  +RAQ  A+ES++ A+ AW FS+ S   R PLV+A+TG TGTGKTE + +LA++L K+R ++      +  GL+VF G D+    ++ + EY  QI+ +L E L +C G  VV+ DE+QK  P TLD L E++S   + T+     S  +D+S VIF+LVSD+G   +   +++Y  R DV   TL+  VK ALD QW+R
Sbjct:   65 CTFVENPSQNVRSYLQTHLRAQDRALESVVAAIEAWEFSRSSSNDRSPLVLAITGPTGTGKTEMSNLLAESLFKRRTKLPNSEKRVASGLLVFRGEDFSDNFTNPITEYHTQIKTRLAEHLHHCSGQAVVVIDEVQKVVPHTLDVLMEALSSRAQFTYYKHGVSRKIDTSNVIFVLVSDIGVLEMEHVMIQYEQRGDVPMATLEKVVKAALDAQWKR 281
[Close]
BLAST of mRNA_H-paniculata_contig12952.1848.1 vs. uniprot
Match: A0A6A3TT52_9STRA (AAA domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TT52_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.170e-47
Identity = 82/217 (37.79%), Postives = 137/217 (63.13%), Query Frame = 1 
Query:    7 CPFADDPVEAATQALRERVRAQPLAIESLLKALSAWHFSQGSGR-REPLVVALTGSTGTGKTETAWVLADALLKKRCRISGGTSDIPRGLIVFNGGDYM--VSSKVEEYQKQIRRKLGERLQYCEGNVVVLFDELQKAAPGTLDALTESMSEHPRVTFEDGRESISVDSSRVIFLLVSDVGAEGVNAAVLRYRNRSDVVAGTLQAAVKKALDEQWER 648
            C F D P +     L++ ++ Q  A+E+++ A+ AW FS+ S + R PLV+A+TG TGTGKTET+ ++A+AL K++ ++      +P GL++F G D+    ++ + EY  QI+ +L E L +C G  VV+ DE+QK  P TLD L E++SE  + ++     + ++D++ VIF+LVSD+G   +   +++Y  R ++    L+  VK ALD+QW+R
Sbjct:   45 CTFVDKPSQVVRSHLQQNLKGQERAVEAVVGAIEAWEFSRTSTKDRAPLVLAITGPTGTGKTETSNLIAEALFKRKKKLPNSEKRVPSGLLIFRGEDFSDNFTNPITEYHTQIKTRLAEHLHHCSGKAVVVMDEVQKVIPHTLDVLMEAVSESSQFSYYKHGVTKNIDTANVIFVLVSDIGVADMEQVMIQYETREEIPTVQLERVVKSALDDQWKR 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12952.1848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3V5_ECTSI5.970e-11679.63AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2V512_9STRA1.100e-5443.78Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A485KDB2_9STRA2.330e-5342.86Aste57867_2684 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0W9D6_9STRA3.130e-5241.47AAA domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A2D4BEI3_PYTIN3.010e-5143.52AAA domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A7S4DD61_HETAK9.460e-5143.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1C6J6_PYTOL2.050e-4941.01Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A836C741_9STRA2.440e-4940.33P-loop containing nucleoside triphosphate hydrolas... [more]
A0A5D6XPH0_9STRA7.500e-4941.01AAA domain-containing protein n=1 Tax=Pythium bras... [more]
A0A6A3TT52_9STRA1.170e-4737.79AAA domain-containing protein n=2 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12952contigH-paniculata_contig12952:417..6642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score348.2
Seed ortholog evalue2.8e-93
Seed eggNOG ortholog2880.D7G3V5
Preferred nameTOR4A
Hectar predicted targeting categoryother localisation
GOsGO:0002576,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031091,GO:0031093,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsKOG2170@1,KOG2170@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size651
Cds size651
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12952.1848.1prot_H-paniculata_contig12952.1848.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12952 417..6642 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.5598953-CDS-H-paniculata_contig12952:416..4701622929021.5598953-CDS-H-paniculata_contig12952:416..470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12952 417..470 -
1691480702.4708247-CDS-H-paniculata_contig12952:416..4701691480702.4708247-CDS-H-paniculata_contig12952:416..470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12952 417..470 -
1622929021.5715692-CDS-H-paniculata_contig12952:1267..14341622929021.5715692-CDS-H-paniculata_contig12952:1267..1434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12952 1268..1434 -
1691480702.4844892-CDS-H-paniculata_contig12952:1267..14341691480702.4844892-CDS-H-paniculata_contig12952:1267..1434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12952 1268..1434 -
1622929021.584471-CDS-H-paniculata_contig12952:4276..44221622929021.584471-CDS-H-paniculata_contig12952:4276..4422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12952 4277..4422 -
1691480702.5022185-CDS-H-paniculata_contig12952:4276..44221691480702.5022185-CDS-H-paniculata_contig12952:4276..4422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12952 4277..4422 -
1622929021.601898-CDS-H-paniculata_contig12952:5503..56651622929021.601898-CDS-H-paniculata_contig12952:5503..5665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12952 5504..5665 -
1691480702.517716-CDS-H-paniculata_contig12952:5503..56651691480702.517716-CDS-H-paniculata_contig12952:5503..5665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12952 5504..5665 -
1622929021.6183972-CDS-H-paniculata_contig12952:6520..66421622929021.6183972-CDS-H-paniculata_contig12952:6520..6642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12952 6521..6642 -
1691480702.5338712-CDS-H-paniculata_contig12952:6520..66421691480702.5338712-CDS-H-paniculata_contig12952:6520..6642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12952 6521..6642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12952.1848.1

>prot_H-paniculata_contig12952.1848.1 ID=prot_H-paniculata_contig12952.1848.1|Name=mRNA_H-paniculata_contig12952.1848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
GLCPFADDPVEAATQALRERVRAQPLAIESLLKALSAWHFSQGSGRREPL
VVALTGSTGTGKTETAWVLADALLKKRCRISGGTSDIPRGLIVFNGGDYM
VSSKVEEYQKQIRRKLGERLQYCEGNVVVLFDELQKAAPGTLDALTESMS
EHPRVTFEDGRESISVDSSRVIFLLVSDVGAEGVNAAVLRYRNRSDVVAG
TLQAAVKKALDEQWER*
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mRNA from alignment at H-paniculata_contig12952:417..6642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12952.1848.1 ID=mRNA_H-paniculata_contig12952.1848.1|Name=mRNA_H-paniculata_contig12952.1848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6226bp|location=Sequence derived from alignment at H-paniculata_contig12952:417..6642- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTCTGTCCCTTCGCCGACGACCCCGTCGAGGCGGCGACGCAAGCATT
ACGGGAACGAGTGCGGGCCCAACCGCTTGCTATTGAATCTCTCTTGAAGG
CCCTCTCCGCGTGGCATTTCAGGTAAGAATGCAATAACTGGAGTGTAGAA
GTTGAATGTTTGCAGTCTATTGCCGTGCGTACCTCACCTCTTGAATAGGG
AGCGCTCCCGTACGGGTTTCACGTTTGTTTTTTATTTAGTCCTATTGCCT
ACGACGCCTCTCGTCGGCGCCGGGAATTGAGTAGAGCTACTACTGGTCGA
TGAAACAGGTTTTTAACTGTTTGCAAGACTGTTCGTGAGCTGTTTTGTTA
CTCATGTATGAATCCGGATCCATCTTGCGACCGTTTGTTGGTGCTCCGCC
ATTATTCTGGTCACATGCAGAACCTGCGACTATTGAAAGGGTGTCGTGCA
CTTTAGTCACTCCGTGAACGATAAATGGTGGATTGGCCGCCGATTTAACA
GTACTGCTGCCGTTGGATATAAAGAGAGGGAGAGAGGGAGAGGACCTTGT
TGCCAATCGAACCCTCAGCATATTTTAATGCTCCTGCATTATTGATGGCA
CCTGGCTGGAGCGTTTGGCCTGTTTTTTATGCCTTTAGCAGGAAAACCTC
ACATTTCTGCCCCAAAGACGCAGCCTCGACACGCGCAAATACACGGATAG
AGTGGCATGCACCTGCAGGTGATGCAACGTGCTAACACGAGCATTGCTTG
CATACTTTTCATGACTTGACTCCTGTACACACACACACACACACACACAC
ACACACATCGTACACGGTTGTAGCGACGCTGCCGACGAAAAACAATTTTT
GTCCTGGTTGCACGTTAAAATTTCCGCGCGTGAGATTAGACACGAACACG
ATACCAAACGGCGTGCAAAAGGGTTGGTGTTCGGATTGTTTTCTTGACGC
ATTTCCCAAAACGATCCCTACGCACAGTCAGGGGTCCGGACGACGCGAGC
CTTTGGTGGTGGCTTTGACGGGGTCGACGGGCACGGGTAAGACCGAGACG
GCATGGGTGTTGGCGGATGCGCTCCTGAAGAAGAGGTGCCGCATCAGCGG
GGGTACGTCGGACATCCCGAGAGGATTAATTGTGTTCAAGTGAGTGAGCG
AGGGAGCAAGTGCAAATACGGACGACGGCAATATCAATATACAGATTAAG
ATAGACAAGGACAGAGACAGAGAGAGAGTCGGACACGTTGGATCCTTACT
GGCGTTTCTTGCTACGGTAGGGTCGTCGTCTTTTCAGACCAGCTTTTCAA
TTCTGTGCTCAAGTACTTGAGGAAAATCAAATCTTTGTTCAAGCGCAGCG
AACTGTCATCCGTAATCGACAAGGCACACGGTCTGCATGGCTTAGCATCG
TCATGGCCCTTTTCCCAGCAAGCAACTAGCGCCGGAGTGTAGCAGCAAGG
ATGCTACACCAAGGAAATGACGACAAGACTCTCCCGCGCTCTTATCTAAA
GTAACCAGTGTCTTATGAATATAGTGATGAAAGTCCGGTATCGTCTTGAG
TTACCCGTCCCCAGTATCTTCTTTGTTACGTTGTTTTCGTGGCTGCTGTT
GCCCCCCCCGGCTCTATTTCGCGGAGCATAATACGATCTACGTGCAGCCG
GCTTTCGAAATATAGCCCATATTGTATTGGTGTACTAAAACCTGAACATC
GAGATGAAGCCGCGCAGTGCTGTGCTAGGGGAATGACGATGTGCACCGAA
AAAAAAAAATGGAGCTGCCGTCACTCAGATTCGAAGACACGGCCCCCACA
CCAAGGCAAACTTATCAGTATCCGTGTGCCGAAAGCTGCACACACTTAAA
ATGGCAACCAGATAGATAGCTTTATGTCCCCGCCAGCAAACGAGAAAATC
AACAACGAAAAGAAGGGTTGCACACACACTCACAAAAACAACAGGCGAAA
TCGGGTATGCCAGCATTTTGCCGTGGGGAAACAGCAAATGTTATGTTGTG
TTGCGGTACGAAACCGCCTGTTTTTCTGCCACCCGTCATACCTCATTTCT
TTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTT
TTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTT
CTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTTG
CACGGTGTTTGTGTGCTCAGCGGAGGGGATTATATGGTGAGCTCTAAAGT
GGAGGAGTATCAGAAACAAATTCGAAGGAAGCTGGGTGAGCGGCTGCAAT
ACTGTGAAGGAAACGTGGTGGTTTTGTTCGACGAGCTGCAAAAAGCGGCG
CCAGGGACCCTCGACGGTGAAAAAGATTGATGATAATTATGATGACCAGT
ACATTGAAATGTTTAGTTGATTGGTTGGCTGATTGGTTGATTCGTAAGGC
TGCAAAGCACACATGAGCAGTTTAGGTGCAGGTGAGACTGAATAAGATGT
GTGTGCAACTCCATGTCCGAAGAATGTGAACTACCTTGAAGGCGAAAACA
AGGTTGTGGGGGTTTCACTAGTGGCTGGTAATCCTCTGGTTGTACGACGT
CAAGACGTTCGCTTTTTATATTGTTATTTTAACGTTTTAAGTCGTTTTTT
ACTCGTATTTTGCCTGACTTTCGACAGCACAATGGACTGACTTCCATGTG
TGGCGTTGTGCAAGCGGCAAAATAATTTTTTTCTTCTTTTTAATCTGGTA
TATAGATTGAAGGTAAAACAGCTAGATCGTCAGGTGGGCTGGAGGCAAAC
GTGAAAGTGTTGAAAACGAAAACAGCTGGACTATGTGATGGACGCATGCA
TAGCACCGGTTCATTTTGTCGTTCTGGGTGTTCCGTTTCGAGAAGGCGAC
TATTGACTGTTGTGTTTGTTGTTATTTTCAGTCTGAACATTTTGCTTCGA
AGTGCAAACGCCGAGTTTTCCTGGGCGTTTGGTACGTTGCGGCAGAGCCC
TTGCATGATAGCACACGGTAGTCACCACGGTAGCCATAATGCAAGGATCA
CTAACTCTACGGAGGGCTGATCGAAGCTACCGTCTTGGGGGATTCTTGTG
AAGCTTGTATTCGTCACTCTTGATTGATTTGGAGCGACCCCGACCAAGCA
TTCTATTTTTTTTTCTTTTCTCGTATAATATTCAGTGTTGTATTTCACCT
GTCTTGTGCCGGATACTGTCATTATTCCGCGTACCGCACATGGCGATAGA
AGATGATATTTTCCAGAGGAGATCTGTATTTTTCCCTACCAGGATTCCAT
GCCGAACCGCACCTTGCCTCCCCCCCATGCTTGATCTGAAATCCTGGATT
TTTTTTTTTCTGCTAAAGAATAGACGGGTGGTCTGAAGTGCCCTCTCATC
AAAACAACTTTTCCTCGGAGTTGTGCATCACGTATTATAGAGCTACAGAG
ATGGCACTGCAGCAGAGTACAGCACAACACAGAAAGCACCTCCACTTGCA
CCCCCTCCCCCGCCCCCCTCCCTACAGTTTTTTCAGTTTGTGGATAATGA
CCAAGTAATCCAGCAGCTTGAAGATACTGAGTATGCCTCCATTACGTTTC
ACGGTTAGTGTCAACGTTTTCAACAGTAATTCATGCATAATTTAATTCTA
TTTTTTTACGTGCTCCTCACTCTGTGGGGCTTTTTCCAAACCGCTTTTCT
CATAGTATAGACTACGTCCTTTCCCAGAAACTTACAAGCGGGTCCCACAA
AGATGAGGAGGAATCTTTCAGAGCCAGAGGTGTATAGTTTTTTTTTTTGG
GGTCTGAATATCACATATTTTGTATAATTTCGGGGAAAAGGGAAAATAGG
AAATATACCCAAATTAAGGTCGCACCTATGCCTCCCCCCCCCCCCCCCCT
AAAAAAAAACTCTCTTACCATTGTTCGTAGGCATAAGCGTGCCAAATTTC
AGAGAAAATCTCGTAGAATTGGACGAGCTTTTGCACAAACTGCAAATACG
TCCGTTTCGGGGTAATGTTGGGGATTAAGTGTCATACTCCAAAATATCGT
AAGCGCACGTTCACAGACAAGATGTTGTCTAAAAAATTTAACCACATCTC
CACATGAACGATGAAATTGATTTTGTTAGTTTTTTTTTTCTGCAACCTTG
AGTGTCGAGATATCTGTGAATTTGGAGGAAAACGGGAAAAAAATAACTCC
AAATTAAGGTTGCAACTGAAAGCTGGTCTCACGGAATAAACGGGAAATCT
CCACCGGGCTGTTTTCTCGTGGTGTTTCTTGAGTTATGAATAATGCTACA
AGCTTGATTCTAGTTATAGATTATAAAAAGAACTATAAGCCCTCCCTTAT
TTTGTTCGTGTTTTCAATTTCAAGATGTTTCAGGTTTCCCGAAGATGGAA
AATAATCGAAGTACAGAAATTGGCACATATCTTCGGAAGAAAGAAAGAAA
GAAAAGACTCTCAATACCCTACCTGGTTCTTTGTACTGCTCATACCTGCC
ATCGCGTTTTTTCCTTTTTGACTCGAAAAAACCACAGGATAAAAGCAAAA
ATGAATCAAAAACTGATATCAGAACATTTTTGGGGGTAAAATATGTCATT
GTCCAAAGCCTTGAAGGTTTGTTTTCCCTCGAGATGTGGGGTAGATATAA
AGCCCGGAACAGCACCATGCTGCTAGAAATCATGTAGAGCACCCTTCGGC
ATGATTTCGTCTCCCATTTCGCGACAGTCATCATGTGAGGACTGTATATG
AATATTTGCTCACCAACTGATGCAGTAGGTCTTGCATCCCTCCTGGTGTG
CAACTACGACCTCATAACGTAACTTTAGCTTCATCGGGTGCGTGCAGCTT
ACTGCGGTGTATAGTTGTGTTACCGCTCTGCAGATGGGTGCATGCGCGTG
TGTGCGTCAGGGTACAATAACAGAAAAATGGAACATGACAATTTTTGTAC
AAATCGAAGCGAAATGGCTGGATTGGGTCAAAATGTCATTAGTTCGAGTC
CTTCACGCAACAACAACCTGAAAGCCTGAATTGGGCCACGGCGTTGTGTT
CGTCTTGTCCGGGGTGTCAATTAGATGTGGTCACAAACAAGAATGTGCGT
GAAGCACTCTTATGCTTGTTGATGGGGTCAGCTTTTATCCTTGGCACCCC
CCGCCTCACCTCCCATGCATGTGACCTACCTGCCCGGCCAATACCTGCGT
ACAATCAGCGTTGACGGAATCCATGTCGGAGCACCCGAGAGTAACGTTCG
AAGACGGGAGGGAGTCGATATCTGTGGACTCGAGTCGAGTTATATTCTTG
CTTGTATCGGACGTGGGTGCAGAGGGCGTGAATGCGGCTGTGCTGCGGTA
CCGGAATCGATCTGATGTGGTGGCGGTGAGTCTTTTTCATGTCTTACGGT
ACAAGGTTGCGAGAATTTTCTTGTCTTGTTCCATTAAATTCCACTTTCTT
CTCCGAAGGTCGCACGCAGGCTCTGAAACGTCAAGCAGTAGACCCTTGCT
GAAGGGGAGTAATATACGCAAATATAACTGTGAGAGTTCGATGAAAAGCG
AGGAAGCGTGTTTTTGTATGTTTTTTGTTTTTCGCGTGGTGAATTGTTAT
GAGATGTTGATTGCGGGACGTGACAGTCATTATCTCATGTGACGGTCACA
TCCCCATTCCCCGGGTTTGTGTAATGTGGTCTCAGTTTGAGCTGGGAGCA
GGAAGCATGGACCGTGTGACCACCCCACCCACTGACAGACTTGTATCGAC
CCAGGGCTTTTCCTGACGTACAGCAATATACAGCTAATACAAGAGACCAG
ACCATTGCCAAGGACTACTTCTACCATCCCAGCCGTACTGCTCTGAGAGT
ATTGTACAGCATAGTCAGTAACAGGAAACAGTAACCTACGTGTGTGAGAT
ACTCCGCAAGACCGCACGGCAGTAATCGTCACAGAAGTGAAATAGATGTA
AAGTCGCTTCGTTTTGTGGGTTTTACTATCTTGAATTGGTTGAAGGATCG
TTGTCAAAACCTGGTTGTTTGCCACTCAAGGTGCCACTCTTGAGGCGAGA
CATGCACTTAATCATTCTGTGGACGATTGGTTATTTGTGTGTTTGCGTTT
CTGTTGCTCAATTATCGTGTGTGTGCGTTGTGTGTTTTCTCCTCCGATGT
ATGTTTTTGACCCCTTCTCCAGGGCACTCTACAGGCCGCAGTGAAGAAGG
CCCTGGATGAGCAATGGGAACGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12952:417..6642-

>mRNA_H-paniculata_contig12952.1848.1 ID=mRNA_H-paniculata_contig12952.1848.1|Name=mRNA_H-paniculata_contig12952.1848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig12952:417..6642- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTCTGTCCCTTCGCCGACGACCCCGTCGAGGCGGCGACGCAAGCATT
ACGGGAACGAGTGCGGGCCCAACCGCTTGCTATTGAATCTCTCTTGAAGG
CCCTCTCCGCGTGGCATTTCAGGGTCTCTGTCCCTTCGCCGACGACCCCG
TCGAGGCGGCGACGCAAGCATTACGGGAACGAGTGCGGGCCCAACCGCTT
GCTATTGAATCTCTCTTGAAGGCCCTCTCCGCGTGGCATTTCAGTCAGGG
GTCCGGACGACGCGAGCCTTTGGTGGTGGCTTTGACGGGGTCGACGGGCA
CGGGTAAGACCGAGACGGCATGGGTGTTGGCGGATGCGCTCCTGAAGAAG
AGGTGCCGCATCAGCGGGGGTACGTCGGACATCCCGAGAGGATTAATTGT
GTTCAATCAGGGGTCCGGACGACGCGAGCCTTTGGTGGTGGCTTTGACGG
GGTCGACGGGCACGGGTAAGACCGAGACGGCATGGGTGTTGGCGGATGCG
CTCCTGAAGAAGAGGTGCCGCATCAGCGGGGGTACGTCGGACATCCCGAG
AGGATTAATTGTGTTCAACGGAGGGGATTATATGGTGAGCTCTAAAGTGG
AGGAGTATCAGAAACAAATTCGAAGGAAGCTGGGTGAGCGGCTGCAATAC
TGTGAAGGAAACGTGGTGGTTTTGTTCGACGAGCTGCAAAAAGCGGCGCC
AGGGACCCTCGACGCGGAGGGGATTATATGGTGAGCTCTAAAGTGGAGGA
GTATCAGAAACAAATTCGAAGGAAGCTGGGTGAGCGGCTGCAATACTGTG
AAGGAAACGTGGTGGTTTTGTTCGACGAGCTGCAAAAAGCGGCGCCAGGG
ACCCTCGACGCGTTGACGGAATCCATGTCGGAGCACCCGAGAGTAACGTT
CGAAGACGGGAGGGAGTCGATATCTGTGGACTCGAGTCGAGTTATATTCT
TGCTTGTATCGGACGTGGGTGCAGAGGGCGTGAATGCGGCTGTGCTGCGG
TACCGGAATCGATCTGATGTGGTGGCGCGTTGACGGAATCCATGTCGGAG
CACCCGAGAGTAACGTTCGAAGACGGGAGGGAGTCGATATCTGTGGACTC
GAGTCGAGTTATATTCTTGCTTGTATCGGACGTGGGTGCAGAGGGCGTGA
ATGCGGCTGTGCTGCGGTACCGGAATCGATCTGATGTGGTGGCGGGCACT
CTACAGGCCGCAGTGAAGAAGGCCCTGGATGAGCAATGGGAACGGTGAGG
CACTCTACAGGCCGCAGTGAAGAAGGCCCTGGATGAGCAATGGGAACGGT
GA
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