mRNA_H-paniculata_contig12951.1847.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12951.1847.1
Unique NamemRNA_H-paniculata_contig12951.1847.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12951.1847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12951contigH-paniculata_contig12951:559..2416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size519
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12951.1847.1prot_H-paniculata_contig12951.1847.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12951 677..2345 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.3666131-UTR-H-paniculata_contig12951:558..6761622929021.3666131-UTR-H-paniculata_contig12951:558..676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12951 559..676 -
1691480702.3965762-UTR-H-paniculata_contig12951:558..6761691480702.3965762-UTR-H-paniculata_contig12951:558..676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12951 559..676 -
1622929021.4111915-UTR-H-paniculata_contig12951:2345..24161622929021.4111915-UTR-H-paniculata_contig12951:2345..2416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12951 2346..2416 -
1691480702.4318259-UTR-H-paniculata_contig12951:2345..24161691480702.4318259-UTR-H-paniculata_contig12951:2345..2416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12951 2346..2416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.378643-CDS-H-paniculata_contig12951:676..7961622929021.378643-CDS-H-paniculata_contig12951:676..796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12951 677..796 -
1691480702.4132268-CDS-H-paniculata_contig12951:676..7961691480702.4132268-CDS-H-paniculata_contig12951:676..796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12951 677..796 -
1622929021.3935657-CDS-H-paniculata_contig12951:2135..23451622929021.3935657-CDS-H-paniculata_contig12951:2135..2345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12951 2136..2345 -
1691480702.421595-CDS-H-paniculata_contig12951:2135..23451691480702.421595-CDS-H-paniculata_contig12951:2135..2345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12951 2136..2345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12951.1847.1

>prot_H-paniculata_contig12951.1847.1 ID=prot_H-paniculata_contig12951.1847.1|Name=mRNA_H-paniculata_contig12951.1847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MWELRRLRREEEMAKARTVLLRNRGGVHTEVTGARGYLSLSDYRRKERRR
KADEVAAKARAAKVSAQVPDEVASSTYAPASTAFTTRAAAGGAAVGASIA
PQVMSAAAA*
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mRNA from alignment at H-paniculata_contig12951:559..2416-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12951.1847.1 ID=mRNA_H-paniculata_contig12951.1847.1|Name=mRNA_H-paniculata_contig12951.1847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1858bp|location=Sequence derived from alignment at H-paniculata_contig12951:559..2416- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACACACTTTCCTCACAGCCGTGGGCTGGTGTACGCGGCGGGGACAAAT
GGCGCGCGAGGGGATTTGGCGATGTGGGAGCTTCGGAGGCTGCGCAGGGA
GGAAGAGATGGCGAAGGCTAGGACGGTGTTGCTTCGTAACCGTGGTGGGG
TGCACACGGAGGTGACAGGTGCGAGAGGATATTTGTCGCTGTCTGACTAC
CGGAGGAAAGAGAGGCGCCGCAAGGCCGACGAGGTGGCGGCGAAGGCTAG
GGCGGCTAAGGTCAGCGCTCAAGTCCCCGATGTGAGTTTGCCCACACCGT
CATAGTTCTTTTTGTGTTGGGTTCGTTGTGGTGGTGATGCGTTGCTATTT
GTTTTTCTGATTCTGGTTGTGTAAACCCACATCGTAGCTGATAAGACGGC
ACCAGCTGCTTGGCTGGTAATCAAGTCTCGTTAAATTACTACTAAAACCT
CGCAGCAGAGTCCAATCGATCCAACCAAGGTGGTCAAATTCGCCATTGAA
AAGGTCTACGCAAATCTTCTTGAATCAGAACCTCCACCACTGTTCACTCC
TGTCGAGCGGCTTTCAAATCCAGCTTTAGACAAACAGCGCGTCTTGCAAA
ACAATCCCCATTTTACGATAGCAAACGTCAAACTGTTCTATTCCGTGTAA
AGGTGATAATGGTACCGAAAAGAGGAGCGACGTCGTTGTCCTGCGGCCTA
ATCCGCTGATTTTTTTTATAGGACAGTAGAGCTACTGTTGTACCGTGTTG
ACTCCCCAATTGATTTCGTTAAGGCTCTCCAAAGACTAATTCCCTAATAC
GGAAGGATGATAGTGAGGAATGCACTTGTACGTGTGAGTTCTGTGCGAAG
CTAATTCCAAATTGTGCAGCTGGAGAGCTCAAGGTAAAGTGAATTTAAGT
GTTGTTTTAGTAACTCTTTTTATCAATGCGCAAGAGACCCGGAAATATAA
AGATATATATATATATATAGCATGAATCTTAAACCGGATAGTCATGTCGT
AATTTTGCACCCCCCGGACAAATATGAATGCTTGCAAATGGTTTTCACAA
AAACTGAAAGTATTCGCCTGAGTTTCACAATGAGCGGGCACGTAGAACAA
AGTACCCACCCTTGTCCATTCGATTTACGAGTATTATTATCTGTCGTGGA
TGGTCCGGGGCACATAGAATAAACTCAGCGAATATTTTAGTTTTTTGTGA
AAAATATTTGCAAGCATTCGTATTTGTCCGGGGGGGTGTCATTTTTTACC
CGACCGATAGATGCGGGTGTCTACAAGGCTAGGTCTCGGAGGGGATTATT
CGTGGCTTATATGTCACCATCAAAAACATAGGTAGTGTAGAACTTAAGTA
AAAAACGAGACCCGCACACACTGAAAACCTTCGGATGCCTACTAATTTTA
CTGAGTACAAGCACTATCTTGCCCACTTTGGCTTTGGTCCGTTACGGTTT
TGTCTACCTCTCTTGACATGGTTGATCTCTTCGTGTCGATTCTCTATCAA
GCGTATACCGGTCTAAACGATGTTGATATATTGCCCACGATCTCATGTCT
CTCATATGTGGGTATTTACTATTGTGAAACACCGCTGTTTATTCGTGTTT
TTCTCTCCTTTCGCAAGCAGGAAGTGGCTTCTTCGACATATGCACCGGCT
TCTACTGCATTCACTACTCGTGCGGCAGCAGGTGGTGCTGCGGTTGGTGC
TTCGATCGCCCCCCAGGTAATGTCAGCTGCAGCAGCCTAGACAAGGGCGG
CAGCAAGAGTCCACCATGTGCGAACAACACGTCGTATAGTCACGGGAGGT
TCGGACAACGCAACACTACGGGATGGATGCATCGCGAATACCACGAAAAG
GAACCCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig12951:559..2416-

>mRNA_H-paniculata_contig12951.1847.1 ID=mRNA_H-paniculata_contig12951.1847.1|Name=mRNA_H-paniculata_contig12951.1847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig12951:559..2416- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGAGCTTCGGAGGCTGCGCAGGGAGGAAGAGATGGCGAAGGCTAG
GACGGTGTTGCTTCGTAACCGTGGTGGGGTGCACACGGAGGTGACAGGTG
CGAGAGGATATTTGTCGCTGTCTGACTACCGGAGGAAAGAGAGGCGCCGC
AAGGCCGACGAGGTGGCGGCGAAGGCTAGGGCGGCTAAGGTCAGCGCTCA
AGTCCCCGATATGTGGGAGCTTCGGAGGCTGCGCAGGGAGGAAGAGATGG
CGAAGGCTAGGACGGTGTTGCTTCGTAACCGTGGTGGGGTGCACACGGAG
GTGACAGGTGCGAGAGGATATTTGTCGCTGTCTGACTACCGGAGGAAAGA
GAGGCGCCGCAAGGCCGACGAGGTGGCGGCGAAGGCTAGGGCGGCTAAGG
TCAGCGCTCAAGTCCCCGATGAAGTGGCTTCTTCGACATATGCACCGGCT
TCTACTGCATTCACTACTCGTGCGGCAGCAGGTGGTGCTGCGGTTGGTGC
TTCGATCGCCCCCCAGGTAATGTCAGCTGCAGCAGCCTAGGAAGTGGCTT
CTTCGACATATGCACCGGCTTCTACTGCATTCACTACTCGTGCGGCAGCA
GGTGGTGCTGCGGTTGGTGCTTCGATCGCCCCCCAGGTAATGTCAGCTGC
AGCAGCCTAG
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