mRNA_H-paniculata_contig12951.1846.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12951.1846.1
Unique NamemRNA_H-paniculata_contig12951.1846.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12951.1846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12951contigH-paniculata_contig12951:92..615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size526
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.484849-CDS-H-paniculata_contig12951:91..4031622929021.484849-CDS-H-paniculata_contig12951:91..403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12951 92..403 +
1691480702.4436927-CDS-H-paniculata_contig12951:91..4031691480702.4436927-CDS-H-paniculata_contig12951:91..403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12951 92..403 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.5087416-UTR-H-paniculata_contig12951:403..6151622929021.5087416-UTR-H-paniculata_contig12951:403..615Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12951 404..615 +
1691480702.4559062-UTR-H-paniculata_contig12951:403..6151691480702.4559062-UTR-H-paniculata_contig12951:403..615Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12951 404..615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12951.1846.1prot_H-paniculata_contig12951.1846.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12951 92..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12951.1846.1

>prot_H-paniculata_contig12951.1846.1 ID=prot_H-paniculata_contig12951.1846.1|Name=mRNA_H-paniculata_contig12951.1846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
PLSPSQPNRFERIVNLQRHLAENIKRKVGQQYTRRFRWREQRLYSLHSTK
RWSRYRREEHGETFLLGPAKALGSLGQSSNASSQQRVLTQKFACSTRRCC
WSE*
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mRNA from alignment at H-paniculata_contig12951:92..615+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12951.1846.1 ID=mRNA_H-paniculata_contig12951.1846.1|Name=mRNA_H-paniculata_contig12951.1846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=524bp|location=Sequence derived from alignment at H-paniculata_contig12951:92..615+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCTCTCTCCATCCCAGCCCAATCGCTTCGAACGCATCGTGAACCTTCA
ACGCCATCTCGCCGAGAATATCAAGCGAAAGGTTGGCCAGCAGTACACTA
GGCGATTTCGCTGGCGCGAACAGAGACTTTACAGCCTACACTCCACAAAG
CGATGGTCGAGGTATCGTCGTGAGGAGCATGGTGAAACGTTCCTGCTCGG
GCCAGCGAAAGCGCTTGGATCGCTCGGCCAATCTTCAAACGCAAGCTCAC
AACAACGTGTACTGACGCAAAAATTCGCCTGCAGTACAAGGCGATGTTGC
TGGAGCGAGTAGAGTACGTTACAGCCTATACTCCTCGCAGCGATGGTCAA
AACATCGTTGTGAGGAGCATGAGATGAAACGTCCCCTACTCGTGTCAGAA
AAACCGCTTGGAATGCATAGAAAACCTTCAACGCTAGTGCCGTACTGTGA
GCACGTAAGTTACTTCACCGGGTTCCTTTTCGTGGTATTCGCGATGCATC
CATCCCGTAGTGTTGCGTTGTCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig12951:92..615+

>mRNA_H-paniculata_contig12951.1846.1 ID=mRNA_H-paniculata_contig12951.1846.1|Name=mRNA_H-paniculata_contig12951.1846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig12951:92..615+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCTCTCTCCATCCCAGCCCAATCGCTTCGAACGCATCGTGAACCTTCA
ACGCCATCTCGCCGAGAATATCAAGCGAAAGGTTGGCCAGCAGTACACTA
GGCGATTTCGCTGGCGCGAACAGAGACTTTACAGCCTACACTCCACAAAG
CGATGGTCGAGGTATCGTCGTGAGGAGCATGGTGAAACGTTCCTGCTCGG
GCCAGCGAAAGCGCTTGGATCGCTCGGCCAATCTTCAAACGCAAGCTCAC
AACAACGTGTACTGACGCAAAAATTCGCCTGCAGTACAAGGCGATGTTGC
TGGAGCGAGTAGCCGCTCTCTCCATCCCAGCCCAATCGCTTCGAACGCAT
CGTGAACCTTCAACGCCATCTCGCCGAGAATATCAAGCGAAAGGTTGGCC
AGCAGTACACTAGGCGATTTCGCTGGCGCGAACAGAGACTTTACAGCCTA
CACTCCACAAAGCGATGGTCGAGGTATCGTCGTGAGGAGCATGGTGAAAC
GTTCCTGCTCGGGCCAGCGAAAGCGCTTGGATCGCTCGGCCAATCTTCAA
ACGCAAGCTCACAACAACGTGTACTGACGCAAAAATTCGCCTGCAGTACA
AGGCGATGTTGCTGGAGCGAGTAG
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