mRNA_H-paniculata_contig12950.1845.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig12950.1845.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 169 bits (427), Expect = 7.010e-46 Identity = 93/243 (38.27%), Postives = 147/243 (60.49%), Query Frame = 2 Query: 5 KPLEE*ITVVPAVQWALNTAWRPSIGTTLFTGLMGRASRTGFTALVEEADEG*VVKPLTSTQVEHEMERIVEAQEERRQNLFYREKAGRPESRELASRRALPHFSVGDFVLVARVRKNGPHAKLMGRWTRSWRMLSDDREHVYETQHLVTGKTRYAHVARMRVYANKELEVTSRMTKMFQYLEHQAQYHIQRIGEMKSAERGDVYVVRVYWQGLDEEESTWELVSKVLADAPAVLLK*QEIRQ 733 + L + + +VPAVQWALNTA+R +T + + GRA RT F+ L + E + L +T+++ +++ +++ Q + + + R R ASR LP F+VGD+V+VARVR++G KL WT WR++S ++HVY Q++V G+ R HVAR+R YA+ EL VTS + +FQ+ Q ++ ++ I + A G Y+VRV W G +E+E TW+ +S + DAP L QE+R+ Sbjct: 167 RNLRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDATKLKQQVQNVIQTQAVLHKQIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLK--QELRK 407
BLAST of mRNA_H-paniculata_contig12950.1845.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 167 bits (423), Expect = 4.570e-43 Identity = 92/237 (38.82%), Postives = 144/237 (60.76%), Query Frame = 2 Query: 23 ITVVPAVQWALNTAWRPSIGTTLFTGLMGRASRTGFTALVEEADEG*VVKPLTSTQVEHEMERIVEAQEERRQNLFYREKAGRPESRELASRRALPHFSVGDFVLVARVRKNGPHAKLMGRWTRSWRMLSDDREHVYETQHLVTGKTRYAHVARMRVYANKELEVTSRMTKMFQYLEHQAQYHIQRIGEMKSAERGDVYVVRVYWQGLDEEESTWELVSKVLADAPAVLLK*QEIRQ 733 + +VPAVQWALNTA+R +T + + GRA RT F+ L + E + L +T+++ +++ +++ Q + + + R R ASR LP F+VGD+V+VARVR++G KL WT WR++S ++HVY Q++V G+ R HVAR+R YA+ EL VTS + +FQ+ Q ++ ++ I + A G Y+VRV W G +E+E TW+ +S + DAP L QE+R+ Sbjct: 1396 VDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDATKLKQQVQNVIQTQAVLHKQVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLK--QELRK 1630
BLAST of mRNA_H-paniculata_contig12950.1845.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE) HSP 1 Score: 124 bits (311), Expect = 1.830e-31 Identity = 67/151 (44.37%), Postives = 97/151 (64.24%), Query Frame = 2 Query: 281 RELASRRALPHFSVGDFVLVARVRKNGPHAKLMGRWTRSWRMLSDDREHVYETQHLVTGKTRYAHVARMRVYANKELEVTSRMTKMFQYLEHQAQYHIQRIGEMKSAERGDVYVVRVYWQGLDEEESTWELVSKVLADAPAVLLK*QEIRQ 733 R ASR LP F+VGD+V+VARVR++G KL WT WR++S ++HVY Q++V G+ R HVAR+R YA+ EL VTS + +FQ+ Q ++ ++ I + A G Y+VRV W G +E+E TW+ +S + DAP L QE+R+ Sbjct: 4 RAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLK--QELRK 152
BLAST of mRNA_H-paniculata_contig12950.1845.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 125 bits (314), Expect = 1.450e-28 Identity = 79/226 (34.96%), Postives = 121/226 (53.54%), Query Frame = 2 Query: 23 ITVVPAVQWALNTAWRPSIGTTLFTGLMGRASRTGFTALVEEADEG*VVKPLTSTQVEHEMERIVEAQEERRQNLFYREKAGRPESRELASRRALPHFSVGDFVLVARVRKNGPHAKLMGRWTRSWRMLSDDREHVYETQHLVTGKTRYAHVARMRVYANKELEVTSRMTKMFQYLEHQAQYHIQRIGEMKSAERGDVYVVRVYWQGLDEEESTWELVSKVLADAP 700 + +VPAVQWALNTA+R G+T + + GRA RT + L V L + +++ +VEAQ + + + +A R + R A +LP F VGD+V+VA +R HVY Q++V+G+ R HVAR+R YA+ LE+T+ + ++FQ+ Q ++ + I +M AE G + V V W G D+EE+TWE +SK+ AP Sbjct: 1498 VDLVPAVQWALNTAFRERYGSTPYHVMFGRAPRTALSTLASSTGAEWKVDVLDEKSLRLKVQHVVEAQRHLHKEVLDKVQASRSKHRASARVGSLPDFVVGDYVIVAA-----------------------ERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPGFDVEVEWVGFDKEENTWEELSKMWDAAP 1700
BLAST of mRNA_H-paniculata_contig12950.1845.1 vs. uniprot
Match: A0A6G0W5I8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5I8_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 9.670e-11 Identity = 43/130 (33.08%), Postives = 77/130 (59.23%), Query Frame = 2 Query: 323 GDFVLVARVRKNGPHAKLMGRWTRSWRMLSDDREHVYETQHLVTGKTRYAHVARMRVYANKELEVTSRMTKMFQYLEHQA-QYHIQRIGEMKSAERGDVYVVRVYWQGLDEEESTWELVSKVLADAPAVL 709 GD+VL +RV +N H KL+ W +R + E+ E +HL+T + R H++R+++YA + EVT ++ +++ Q + I K + YV+ V+W+GL+E E++WE +SK++ + PAV+ Sbjct: 414 GDYVLWSRVDENH-HPKLLVTWLGPYR-ATQVNEYSLEIEHLLTKERRQVHMSRVKLYAEESFEVTE---ELLEHISEQGIMLKVSSISMHKLGKDAGEYVLLVHWEGLEEIEASWERLSKLMRECPAVV 538
BLAST of mRNA_H-paniculata_contig12950.1845.1 vs. uniprot
Match: A0A6G0WKN0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WKN0_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.290e-10 Identity = 47/150 (31.33%), Postives = 88/150 (58.67%), Query Frame = 2 Query: 323 GDFVLVARVRKNGPHAKLMGRWTRSWRMLSDDREHVYETQHLVTGKTRYAHVARMRVYANKELEVTSRMTKMFQYLEHQA-QYHIQRIGEMKSAERGDVYVVRVYWQGLDEEESTWELVSKVLADAPAVL------LK*QEIRQPLKRAL 751 GD+VL +RV +N H KL+ W +R ++ E+ E +HL+T + R H++R+++YA + EVT ++ +++ Q + I K + YV+ V+ +GL+E E++WE +SK++ + PAV+ +K ++IR+ L+ A+ Sbjct: 123 GDYVLWSRVDENH-HPKLLVTWLGPYR-VTQVNEYSLEIEHLLTKERRQVHMSRVKLYAEESFEVTE---ELLEHISEQGIMLKVSSISTHKLDKDAGEYVLLVHSEGLEEIEASWERLSKLMRECPAVVQAYVKTIKSKKIREALEAAM 267
BLAST of mRNA_H-paniculata_contig12950.1845.1 vs. uniprot
Match: A0A6G0XLE4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XLE4_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 6.530e-10 Identity = 51/171 (29.82%), Postives = 93/171 (54.39%), Query Frame = 2 Query: 209 RIVEAQEERRQNLFYREKAGRPESRELASRRALPHFSVGDFVLVARVRKNGPHAKLMGRWTRSWRMLSDDREHVYETQHLVTGKTRYAHVARMRVYANKELEVTSRMTKMFQYLEHQAQYHIQR----IGEMKSAERGDVYVVRVYWQGLDEEESTWELVSKVLADAPAVL 709 ++ E+ E + + + A + ++R+ S+ + + GD+VL +RV ++ H KL+ W S+R++ + E +HL+T + R AH++R+++YA EVT + LEH A I R I K + D Y + V+W+G + E++WE V+ ++ D PAV+ Sbjct: 699 KLQESMSELHKEIVEKNHARQDKARKRTSQYSACNAERGDYVLWSRVDESH-HPKLLVTWVGSYRVV-EVNEFSARIEHLITKEQRDAHMSRLKMYAESSFEVTEEI------LEHVADQGILRKVEHIAAHKFDKNRDCYDMLVHWEGFESIEASWEEVTHLVPDCPAVV 861
BLAST of mRNA_H-paniculata_contig12950.1845.1 vs. uniprot
Match: W4GEH4_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GEH4_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.880e-9 Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 2 Query: 323 GDFVLVARVRKNGPHAKLMGRWTRSWRMLSDDREHVYETQHLVTGKTRYAHVARMRVYANKELEVTSRMTKMFQYLEHQAQYHIQRIGEMKSAERGDVYV-------VRVYWQGLDEEESTWELVSKVLADAPAVL 709 GD+VL +RV + H KL+ W +R+ S V +HLVT + R AH AR+++YA EVT + LEH ++ I + ++KS GD +V ++V+W+G ++ ES+WE ++K++ + PAV+ Sbjct: 31 GDYVLWSRVDERY-HPKLLVTWVGPYRVESVGEFSVM-LEHLVTHEEREAHTARVKMYAETSFEVTEEI------LEHVSEQGI--VSQVKSI-AGDKFVPDVSDFMLKVFWEGFEDIESSWEPLNKLMRECPAVV 155
BLAST of mRNA_H-paniculata_contig12950.1845.1 vs. uniprot
Match: A0A6G0MV46_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MV46_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 2.820e-9 Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 2 Query: 287 LASRRALPHFSVGDFVLVARVRKNGPHAKLMGRWTRSWRMLSDDREHVYETQHLVTGKTRYAHVARMRVYANKELEVTSRMTKMFQYLEHQAQYHI----QRIGEMKSAERGDVYVVRVYWQGLDEEESTWELVSKVLADAPAVL 709 +A R L +F+VGD+VL +RV + KLM RW +R +++ RE + +HL+TG T H +R++ + + +EV + LEH ++ I ++I E + + + V W+GL + E +WE +S +L D PA++ Sbjct: 692 MAKRGKLENFTVGDYVLWSRVDERLRGNKLMVRWVGPYR-VTEAREFSFMIEHLLTGDTLEVHGSRLKFFDDASMEVNEEI------LEHVSKQGIVMAVEQIREHRYNNVAQQWELLVSWRGLQDVEDSWEPLSSLLQDVPALV 829
BLAST of mRNA_H-paniculata_contig12950.1845.1 vs. uniprot
Match: A0A5D6XN34_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN34_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 9.170e-9 Identity = 41/130 (31.54%), Postives = 71/130 (54.62%), Query Frame = 2 Query: 311 HFSVGDFVLVARVRKNGPHAKLMGRWTRSWRMLSDDREHVYETQHLVTGKTRYAHVARMRVYANKELEVTSRMTKMFQYLEHQAQYHIQRIGEMKSAERGDVYVVRVYWQGLDEEESTWELVSKVLADAP 700 +FS+GDFVL +R+ KL+ RW + ++ H QHL T + H + ++ Y++ LEVT ++ ++ +Q R + + ERG V+ V + W+GL +EE +WEL++ ++AD P Sbjct: 709 NFSIGDFVLWSRINTGLISNKLLARWVGPFAVIVS-APHSLTIQHLATNQQYIVHPSLLKFYSDSSLEVTE---ELLAHVGNQGVVLSVRDIKARRKERG-VWQVLIAWEGLQDEEDSWELLTSMIADIP 833 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12950.1845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12950.1845.1 >prot_H-paniculata_contig12950.1845.1 ID=prot_H-paniculata_contig12950.1845.1|Name=mRNA_H-paniculata_contig12950.1845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=172bp MERIVEAQEERRQNLFYREKAGRPESRELASRRALPHFSVGDFVLVARVRback to top mRNA from alignment at H-paniculata_contig12950:5181..7184- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12950.1845.1 ID=mRNA_H-paniculata_contig12950.1845.1|Name=mRNA_H-paniculata_contig12950.1845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2004bp|location=Sequence derived from alignment at H-paniculata_contig12950:5181..7184- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12950:5181..7184- >mRNA_H-paniculata_contig12950.1845.1 ID=mRNA_H-paniculata_contig12950.1845.1|Name=mRNA_H-paniculata_contig12950.1845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at H-paniculata_contig12950:5181..7184- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |