mRNA_H-paniculata_contig12928.1836.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12928.1836.1
Unique NamemRNA_H-paniculata_contig12928.1836.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12928.1836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12928contigH-paniculata_contig12928:6456..6925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size470
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929018.4323347-UTR-H-paniculata_contig12928:6455..65411622929018.4323347-UTR-H-paniculata_contig12928:6455..6541Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12928 6456..6541 +
1691480701.4796076-UTR-H-paniculata_contig12928:6455..65411691480701.4796076-UTR-H-paniculata_contig12928:6455..6541Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12928 6456..6541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929018.4486034-CDS-H-paniculata_contig12928:6541..69251622929018.4486034-CDS-H-paniculata_contig12928:6541..6925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12928 6542..6925 +
1691480701.490519-CDS-H-paniculata_contig12928:6541..69251691480701.490519-CDS-H-paniculata_contig12928:6541..6925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12928 6542..6925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12928.1836.1prot_H-paniculata_contig12928.1836.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12928 6542..6925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12928.1836.1

>prot_H-paniculata_contig12928.1836.1 ID=prot_H-paniculata_contig12928.1836.1|Name=mRNA_H-paniculata_contig12928.1836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
MTAMREAFSTIVAVLVPTLLEVVPTPFVAVFTTDGGCWWYRCCVTIAVAV
AAAVAVVIAIDVGVGVIVVDDDNDNDNDAESADVLSGDNDTLPLLAEPPA
VVTPPSPPTPLPLPPSPLFSFILPAPLE
back to top

mRNA from alignment at H-paniculata_contig12928:6456..6925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12928.1836.1 ID=mRNA_H-paniculata_contig12928.1836.1|Name=mRNA_H-paniculata_contig12928.1836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=470bp|location=Sequence derived from alignment at H-paniculata_contig12928:6456..6925+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCCCCGCCTCCTTCCCCGACTTCTCCGCCGCTAGCGCTGCCTGTGGCG
TTCCGCCGCTTGTAGTTGTTGCGCTGCTGCTCCAGCATGACGGCGATGAG
GGAAGCCTTCTCGACGATCGTGGCAGTGTTGGTCCCGACGCTGTTGGAGG
TAGTGCCCACGCCTTTCGTGGCTGTTTTCACGACTGATGGCGGCTGTTGG
TGGTATCGTTGTTGTGTGACTATTGCTGTAGCTGTTGCTGCCGCTGTTGC
TGTTGTTATCGCTATTGATGTTGGCGTTGGCGTCATCGTCGTGGATGATG
ACAATGATAACGACAATGATGCTGAGTCAGCTGATGTGTTGTCGGGCGAT
AATGATACACTGCCACTGCTCGCAGAGCCGCCCGCTGTTGTTACTCCGCC
ATCGCCACCGACACCGCTGCCGCTGCCGCCCTCTCCACTTTTCTCATTCA
TTTTGCCAGCACCATTAGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12928:6456..6925+

>mRNA_H-paniculata_contig12928.1836.1 ID=mRNA_H-paniculata_contig12928.1836.1|Name=mRNA_H-paniculata_contig12928.1836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig12928:6456..6925+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGCGATGAGGGAAGCCTTCTCGACGATCGTGGCAGTGTTGGTCCC
GACGCTGTTGGAGGTAGTGCCCACGCCTTTCGTGGCTGTTTTCACGACTG
ATGGCGGCTGTTGGTGGTATCGTTGTTGTGTGACTATTGCTGTAGCTGTT
GCTGCCGCTGTTGCTGTTGTTATCGCTATTGATGTTGGCGTTGGCGTCAT
CGTCGTGGATGATGACAATGATAACGACAATGATGCTGAGTCAGCTGATG
TGTTGTCGGGCGATAATGATACACTGCCACTGCTCGCAGAGCCGCCCGCT
GTTGTTACTCCGCCATCGCCACCGACACCGCTGCCGCTGCCGCCCTCTCC
ACTTTTCTCATTCATTTTGCCAGCACCATTAGAGATGACGGCGATGAGGG
AAGCCTTCTCGACGATCGTGGCAGTGTTGGTCCCGACGCTGTTGGAGGTA
GTGCCCACGCCTTTCGTGGCTGTTTTCACGACTGATGGCGGCTGTTGGTG
GTATCGTTGTTGTGTGACTATTGCTGTAGCTGTTGCTGCCGCTGTTGCTG
TTGTTATCGCTATTGATGTTGGCGTTGGCGTCATCGTCGTGGATGATGAC
AATGATAACGACAATGATGCTGAGTCAGCTGATGTGTTGTCGGGCGATAA
TGATACACTGCCACTGCTCGCAGAGCCGCCCGCTGTTGTTACTCCGCCAT
CGCCACCGACACCGCTGCCGCTGCCGCCCTCTCCACTTTTCTCATTCATT
TTGCCAGCACCATTAGAG
back to top