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Homology
BLAST of mRNA_H-paniculata_contig12928.1835.1 vs. uniprot
Match: D8LPX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX8_ECTSI) HSP 1 Score: 119 bits (298), Expect = 1.090e-28 Identity = 69/117 (58.97%), Postives = 83/117 (70.94%), Query Frame = 2
Query: 632 MCTRVLHLEAALVRSELDLRRAKTELMTVRQEAHAMRKAKDVEDQERPSS----ADVAALYHALEGSVVLLQMASEKMVHLEHCLEKYRGVLPGPVLTELQKCVTQDAIVTSPLPVR 970
M RV+HLEAALVRSELDL RA+TEL R+EA A+ +AKD R D+ ALYHALEGSVVLLQ+ASEKM+ LEH + K+R +P + ELQ CVTQDA++ SPLP R
Sbjct: 1 MKNRVMHLEAALVRSELDLCRARTELEANRREAEALSQAKDAATDRRDRHPVVPGDIPALYHALEGSVVLLQIASEKMLRLEHTIAKHREAMPRYLYRELQDCVTQDAMLLSPLPRR 117
BLAST of mRNA_H-paniculata_contig12928.1835.1 vs. uniprot
Match: A0A6H5KJF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF2_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 1.690e-17 Identity = 63/126 (50.00%), Postives = 76/126 (60.32%), Query Frame = 2
Query: 605 GSGQEGMREMCTRVLHLEAALVRSELDLRRAKTELMTVRQEAHAM----RKAKDVEDQERPSSADVAALYHALEGSVVLLQMASEKMVHLEHCLEKYRGVLPGPVLTELQKCVTQDAIVTSPLPVR 970
G G+E + M RV+HLEAALVRSELDL R A D D+ D+ ALYHALEGSVVLLQ+ASEKM+ LEH + K+R +P + ELQ CVTQDA++ SPLP R
Sbjct: 623 GEGEE-VAGMKNRVMHLEAALVRSELDLCRXXXXXXXXXXXXXXXXXXXEAATDRRDRHPVVPGDIPALYHALEGSVVLLQIASEKMLCLEHTIAKHREAMPRHLYRELQDCVTQDAMLLSPLPRR 747
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-15_001750.1 |
| Exons | 5 |
| Model size | 1368 |
| Cds size | 792 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12928.1835.1 >prot_H-paniculata_contig12928.1835.1 ID=prot_H-paniculata_contig12928.1835.1|Name=mRNA_H-paniculata_contig12928.1835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=264bp
MGTPMCSESGRGLRAPHPMMGAPHDMEDMENSVSLGGGGASDGDDKHGTD
GRGPTAALSDNNTSGPIGLWMQNEGSAGGGRAAEAAPLSSSVPMIVGEGV
ELAWGEVGRVGTGEAAAGGNGGSGVVGGAVAAAAGIRRIGSGQEGMREMC
TRVLHLEAALVRSELDLRRAKTELMTVRQEAHAMRKAKDVEDQERPSSAD
VAALYHALEGSVVLLQMASEKMVHLEHCLEKYRGVLPGPVLTELQKCVTQ
DAIVTSPLPVRMD* back to topmRNA from alignment at H-paniculata_contig12928:114..6478- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig12928.1835.1 ID=mRNA_H-paniculata_contig12928.1835.1|Name=mRNA_H-paniculata_contig12928.1835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6365bp|location=Sequence derived from alignment at H-paniculata_contig12928:114..6478- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCGGGGAAGGAGGCGGGGGAGGAGGTGGGGAGGGCGCCAGCGCAGCCC
CTCTTCACCAGTCGGGCGAAGCCACTAACACCTCCATTACCAACAGCAAC
AACCATACCACTAACCCCGAAAAGCCTGTGTTACCCTTGAGCCGACCCGG
GGCCGGCGTCGGCGCCAGACATCTAGACCAACCCTGCATGGGCACGCCAA
TGTGTTCAGAGAGTGGCCGGGGCTTGCGCGCACCCCACCCCATGATGGGT
GCGCCGCACGACATGGAGGACATGGAGAATTCTGTTTCGCTAGGAGGGGG
AGGAGCAAGTGACGGCGACGACAAACACGGCACCGACGGACGCGGCCCCA
CCGCCGCGCTGAGCGACAACAATACCAGTGGCCCGATCGGACTCTGGATG
CAGAACGAGGGATCGGCGGGCGGAGGGCGCGCGGCTGAAGCGGCCCCCCT
GTCGTCTTCCGTGCCGATGATCGTGGGTGAAGGGGTGGAACTCGCGTGGG
GTGAGGTTGGTCGCGTTGGTACCGGGGAGGCGGCGGCTGGTGGTAATGGT
GGCAGTGGTGTTGTTGGCGGGGCGGTGGCTGCGGCTGCGGGGATTAGGAG
GATCGGGAGCGGGCAGGAGGGGATGCGCGAAATGTGCACGAGGGTCTTGC
ACTTGGAGGCTGCTCTGGTGCGCTCGGAGGTATGTAACGTATTTGTAGAG
GGTATGTGTGTTTATATGTATGTATTAAGGTAGAGGTGTGTAGATGTTTA
TGTTCAAGTATATGTGTATCTATGTATCTATGTATCCATGTGTTTGTATT
TGTTTGTTTGTTTTCTTCTTGGTCGCCTGGTGGCCAAGGCAAAGAAAGAT
TTCGTAAGGCTATTTTATGAATTGAGACTGCTATTTTTAGCGGAGGTGGA
AATGTTTGTGTGTTTTATTTATGTGTGCCTGTTGGTGCGAGCGTTGTTTT
GCACGTGGTGGTTTTGATGCGATTTTTTTCTTTTCGAATTGTTGGAATAA
AATTTACCTGATATTTGATTTTTAAAGCAAAAAAAAAGAATCTCATACAA
TTATTAGGACTGGTTATCGTATCACCCGACACGCGGTGTGTCAATCTGCC
GACGCTCGTTCTCGTTCTCTTTCTCTCTGTTAACAACAAAATTCCACCTA
CTTTTTGTGTGTTTTTTGTTTTTGTATTGCTTTTCTTTTCGTGTCGGCGT
TTTTATGATCTATATCTGGTGACATTGAACCGATCTTCATCGCGCGTGCG
CACGCGCGGCGAACAACAATGAAACACGAAAAACCAACATAAAAAAAAAA
ACAGCTGGACCTTCGCCGAGCAAAAACAGAGCTGATGACCGTTCGGCAAG
AAGCGCATGCGATGAGAAAAGCCAAGGTGGGTTGGTTACTCTGCTGTACA
GGCACGATAAGCCAAAAGATAGGTTAAGTGTACTTGAAAAGAGAGGCAAG
AGTTTTTTTTGTTTTTTTTTAACGATGGTAATAGAAAAGGAAGGTACAGG
TAGGATTTTTTACTCCCTTCGAGTCAGGGGACGGAAAAAGGTGCTGTTGC
CGGTAAGAACGTTTGTTTTTTTTTGCGTAAAGGTAAAAGGGAGAAGAAAC
ACCACCACACTGAAGAGCTCTTTCTGTCATAGGTACGAAAAGATTGATGA
AGTTCGGCAGATATCGTTGTTTATTTTTTTGCTCCCTTGCTTTTTCGTCT
TGCATTATTGCCTACATGTTTCTGGTGGGCTGTTATTCGTAGATTGTTCC
AATGGGCCTCGGGTCGGTGTTGTTGCTTCAATCGCCGCTGTTGTGTTGTT
GGCTTGTTGGCTTGTTGGCTGAAGGAGGAAATAACTTTTTGCTATTTTTT
TTCGGCCGAAACACACCAGTCAGACCGGTCGGTCCTAGGGAAATCCTTTG
ACTAAATAAATAATAGAATAATGATTCTCTCGTTAAAAATGAAGTATTTT
GCCTATTTTATCCCAAGTGTTTTTTCGTGAAAGCGTTTTTTTCTTTCTTT
TTGCCGTTTTTAGGGTATAAGTTTCGATACTTGATTCAAGTGTGTGTGTG
TGTGTGTGTGTGTTTTACCTTCTTTTTGGAGAAGAAATTTTTCGTGTGGG
AAACGTGGTGACACTCGCCTTTGAAATATTCGTAGGATTTGGGAAACGAA
AGTGATAAAAATGTGCTATAAAAAAGGGGAAGGTTTGAGATGGACAGGAT
CGGTGGAAAGTTGCTTTCACGCCCCGGACAAATACGAATACAAGACGCGA
ATAAACACGAGAAATCTGGAACGGATACCTAGTCTGTTTAAGCCGGGGCA
GATGTCTATGTAACGCGAATAATATGCGGTGTACTCGACATGCCATGGAG
CGTCGAAAAGCTCGGGCAGATGGAGTATTCAATCTGTACAGTACCATATG
GAAAACAAGCAGGACCTGCATGTGTGACTGACCGTTCACCGGGTATATGA
CCACCGCGTGACCATCTGTAGAGTGACCATTCACAGACTTGTAAACGAGT
AAGTGCGTGTCTGTCCAAAACAAATAATGATAGTGTGAGATAGATGCGAA
TGCTTCATTCGTACTTGCCCGGGGGGGGGAATTTTTAAGCTTTAAACATT
TGTGACGCACTATTCGCACTGTAGGCAATGTAAGAAGGAGCGATTAGCCG
TAATCGGGAATGACTCTTGTGAGGACATAGCTTGTTCCTCTCGAGGACAC
GTGGTCGACGGCCTATCTACTACGGCATACAAAACATTAGTACATCATAT
CCGCCACCTCTTATGTATTTCTTGCTGTTATTTCGTGGTTTGCAGGATGT
GGAGGATCAAGAGAGACCAAGTTCCGCCGACGTCGCAGCTCTGTACCACG
CATTGGAGGGATCTGTGGTTCTCTTGCAGGTGAGCAGGGAATGAATACAT
GAGTCTACTGGTGCCGTGTCGTGAGACCATGGTATAGAGAGCCATTTTAA
TGTATTTTTCCATTGTGGTACAAGCTAACATGTGCAATTCAATTCTGACC
TCTCAAAAACATGCTCAATTTTTTTCAAATTTTGACGTTGAGAGAGAGAG
AGAGAGAGAGAGATGAAGCAAAGGAAGGGATGGGCCGTGAACCAGTTATC
GACGACACCGTTGGTTACAGAAGTGCTATACTACCTGTCCCATAAGTCAG
GTTTTGGATTGGTATTTTGTTGATATCTTTGTTGCACTTTGGGGTTTCGT
GAAAAATGAAGCGTATCATTCGAAGGCCTGCACGTTCAGCTTGCATGTAT
AATAGATGCCTTCAACATTTTTTTTTTTTCGAAATGGTTGAGAACCGGTT
ATATATCTCAACGTTTTTTTTGTGTTTTTTTCGGGAATGGCATATTTTGC
TAAAACAAATGAATAGGATCGAAATCGACTGAAAATCGTGGTTAATGGTT
GATGAAGTCCCAAGGAGACCTCCGATTAAGAAATGGTTTGTTGTGTGGTA
TACCTTGGCGTTTCATAGTATGTAGTACGATAAATTCATTGTTCATTACT
GCTATCCTCTTCATGAATCCACCAATTGAATGCCACGCTGTAAGCGACTC
TGTCAATCGGAACCAACTGGTTCGAAAGCCTCTCACGCTATCTTTTCCTG
CTCCCGGTATACCCAATGTCTAAATCGTTGCCCCTCAGCGCATTCCACGC
TTGGTTGTACCGCTTGAAGAGACTTTCCCAATCCAACTCTCGAGTATCCA
CGTCATATTGGCCGTACATGCTCTTTACCCCCCTCTACAAGGCCGTTCAA
CATACGGTAGCGCTCTCTCTACGCTCTAGATTTCAGGGATATGAAAACCC
CCAAATCATTGATAGTGAGATCGGGAGACTGCACCGGCTGCGTTACGAGC
TTGATGTTCCATCCGTCCTCGCTCTCCGCCAGGTGTGTGGAGGCAGCGCT
ACCGTATGTTGAACGCCCTTGTAGAGGGGGGTTAAGAGCTTGTACGGCCA
GTATGACACTCGAAAGTTGGATTGGGAGACCTCTTCAAGCGGTACAATCA
AGTGTGGAATGCGCTGAGGGGCAACGATTTAGACATTGGGTATACCGGGA
GCAGGAAAAGATAGCGTGAGAGGCTTTCGAACCAGTTGGTTCCGATTGAC
AGAGTCGCTTACAGCGCGGCATTCAATTGGTGGATTCATGAAGAGGATAG
CAGTAATGAACAATGAATTTATCGTACTACATACTATGAAACGCCAAGGT
ATACCACACAACAAACCAATTCTTAATCGGAGATCTCCTTGGGACGTCAT
CAACCATTAACCATGATTTTCAGCCGATTTCGGCTTTATTCATCTGTTTT
TGCAAAATCTTGTACTCCCGAAAAAAACCCCAAAAAAAACAGACGTGTTG
AGATATATAACCGGTTCTCAACCATTTCGGATTAAAAAAACATGTTGAAG
ACATCTATACATGCAATCTGAACGTGTAGGCTTTTGAATGATTTGCTTTA
TTTTTCACGAAAACCAAAATTTGAACCAAGTAATGTACAAAATACAGTTA
TATAAGCCAAAATTATGGGACAGAGGTAGAGTAGTACCGACATTGGGTAC
AACAGCACTCAACATCTACCGCCCTTTCTTTCCCCCTCGACCTCGCTGTT
TTTTTGTGTGTTTGGTTCTCGTACTTCGTGTGTGTGTTGTGTTTGTTTTC
GGTTGCAGATGGCTTCGGAGAAAATGGTTCACCTTGAGCATTGCCTTGAG
AAGTATCGTGGAGTCTTGCCGGGGCCCGTCTTGACCGAATTACAGGTATG
TCAACACGTAAAGGCAGTCTACTGTACAATACAGGAGCGGCCCGCTAGTA
AAAAACTGAGAGTTACCTTCATTTCCGCGCTTTTTGTGTCAGCGGAAGCT
CGAAATCATTTTTTTGTTTTTTTAATGTTTTTTTTTTATGTGGGGCTACA
ATTTGAGGTCAAATTATTTCATACGCTATATTTGTTCATATTTTTTTCGA
ATTTAGCAGAGCTGCATTGTGTCTTTGTTCAGCACGACATGCTGCTTGTG
AATGGGGGCCGGCACTGCATACAATCTGGTCCATTTATTCGCATGTCCTT
TCGTCAAAACGTATTCTTAGAAAAGAGTGACCTACCTATCGATTTATTTA
CCTGTTGTGCATTATTTGTTTACTATCCTTCGTACGTTAAACCTAGACGA
AGGTAAAACGTCAGGATCAGGTAAGGATTAAGGATTGAGTAATCTTCATG
ACCGAAAATGAACACTTGGTAGTGTGGAGTTAGTTAGCATGGAGAGTCGA
ACGTTTAGATTTTTGCTTCGGGTTTATCTGCGGTTTATTTTCGTAATGCT
GCGCATGCCATTTTAGTTTAGTTTAGTTTAGTTTAGTTTTTCTGCGTGTT
TTTCAGTGTTTTTCTGCGTGTTTTTCAGTGTTTTTCAGTGTTTTTATAAC
CTTTTTTAGCGCCGTCGTATAAGGACAATTTGGACGTCAGCAGCCCTTGT
TGCTTGTTTTTAATAGGTACACTTGCTTCCTTCTACCGTAAAGCTAATGC
TCTTGCAGGTGATCACAAAAGAGGATACGCAACGGGACTTGACTGTTATT
TAACTCCTGGCGAGTAGTGCAGCGACGGCCACACTCACTCGTACAAATCA
AGTTGGTGGTCTTTTGGTAGATAGGTTAACTCGGTCTGTATTCGTCTGTT
GTAATCTACATCGTGTCTGTTGAAAAATGTTTTTTTTTTTCATACATCCA
ACGACTAACGACACTAGTCGCCTGAAAAGGGTGAATAGGCAATGATACCC
CCCCCCCCTATTGGTCATGATTTATTTTGCTGATGAGTGCACACAACTGA
AATTGGAGGTCAGCCGCATAATCTCAACATCGGTACAATGGAATTATCAT
ATAAGCCATGCTTCCCCCCCCCGCCCTCCTGCTCCTCCTCCGCCGCCGCC
GCCGCTCTCCATCTTCCAGAAATGCGTTACCCAAGACGCTATTGTTACAT
CGCCACTCCCGGTGAGGATGGATTGAAACGCCACCAACAGCAGTCACTTG
GTAGCTCGTGACAGGAAGAGAAATCAGACTAGTATTTATCATACAGTTGT
GCTGTGTCTGTTTGTCCCTTAGATGCCTCTTCTGTGGTCATTTGTCAAGG
GCCCTTCCTTTGGCCGGTAAGCGGAGGAGGTGGGTTTGCTGAGAGATGCT
AGATGATGCTCGGTTAGTCTTGCACGCCGTGTTGCACTCCATAGTGTGCG
AAGTTTCGATTTCCAAAGTTTTTTTTTTTGTTTTTTTTTAGCAGAGGGAG
AAAGGGGGGCGTTGGTGGCGCTTCTGTTTCTTTTTGGTCGCTTCGTTGGA
ATGTAATGTGCTGTAGTATTTACGCTCGTTTTAGTTCGTTTGTGTGATCC
CTGCCTGTTTTTGTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig12928:114..6478- >mRNA_H-paniculata_contig12928.1835.1 ID=mRNA_H-paniculata_contig12928.1835.1|Name=mRNA_H-paniculata_contig12928.1835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at H-paniculata_contig12928:114..6478- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCACGCCAATGTGTTCAGAGAGTGGCCGGGGCTTGCGCGCACCCCA
CCCCATGATGGGTGCGCCGCACGACATGGAGGACATGGAGAATTCTGTTT
CGCTAGGAGGGGGAGGAGCAAGTGACGGCGACGACAAACACGGCACCGAC
GGACGCGGCCCCACCGCCGCGCTGAGCGACAACAATACCAGTGGCCCGAT
CGGACTCTGGATGCAGAACGAGGGATCGGCGGGCGGAGGGCGCGCGGCTG
AAGCGGCCCCCCTGTCGTCTTCCGTGCCGATGATCGTGGGTGAAGGGGTG
GAACTCGCGTGGGGTGAGGTTGGTCGCGTTGGTACCGGGGAGGCGGCGGC
TGGTGGTAATGGTGGCAGTGGTGTTGTTGGCGGGGCGGTGGCTGCGGCTG
CGGGGATTAGGAGGATCGGGAGCGGGCAGGAGGGGATGCGCGAAATGTGC
ACGAGGGTCTTGCACTTGGAGGCTGCTCTGGTGCGCTCGGAGATGGGCAC
GCCAATGTGTTCAGAGAGTGGCCGGGGCTTGCGCGCACCCCACCCCATGA
TGGGTGCGCCGCACGACATGGAGGACATGGAGAATTCTGTTTCGCTAGGA
GGGGGAGGAGCAAGTGACGGCGACGACAAACACGGCACCGACGGACGCGG
CCCCACCGCCGCGCTGAGCGACAACAATACCAGTGGCCCGATCGGACTCT
GGATGCAGAACGAGGGATCGGCGGGCGGAGGGCGCGCGGCTGAAGCGGCC
CCCCTGTCGTCTTCCGTGCCGATGATCGTGGGTGAAGGGGTGGAACTCGC
GTGGGGTGAGGTTGGTCGCGTTGGTACCGGGGAGGCGGCGGCTGGTGGTA
ATGGTGGCAGTGGTGTTGTTGGCGGGGCGGTGGCTGCGGCTGCGGGGATT
AGGAGGATCGGGAGCGGGCAGGAGGGGATGCGCGAAATGTGCACGAGGGT
CTTGCACTTGGAGGCTGCTCTGGTGCGCTCGGAGCTGGACCTTCGCCGAG
CAAAAACAGAGCTGATGACCGTTCGGCAAGAAGCGCATGCGATGAGAAAA
GCCAAGCTGGACCTTCGCCGAGCAAAAACAGAGCTGATGACCGTTCGGCA
AGAAGCGCATGCGATGAGAAAAGCCAAGGATGTGGAGGATCAAGAGAGAC
CAAGTTCCGCCGACGTCGCAGCTCTGTACCACGCATTGGAGGGATCTGTG
GTTCTCTTGCAGGATGTGGAGGATCAAGAGAGACCAAGTTCCGCCGACGT
CGCAGCTCTGTACCACGCATTGGAGGGATCTGTGGTTCTCTTGCAGATGG
CTTCGGAGAAAATGGTTCACCTTGAGCATTGCCTTGAGAAGTATCGTGGA
GTCTTGCCGGGGCCCGTCTTGACCGAATTACAGATGGCTTCGGAGAAAAT
GGTTCACCTTGAGCATTGCCTTGAGAAGTATCGTGGAGTCTTGCCGGGGC
CCGTCTTGACCGAATTACAGAAATGCGTTACCCAAGACGCTATTGTTACA
TCGCCACTCCCGGTGAGGATGGATTGAAAATGCGTTACCCAAGACGCTAT
TGTTACATCGCCACTCCCGGTGAGGATGGATTGA back to top
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