mRNA_H-paniculata_contig12919.1831.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12919.1831.1
Unique NamemRNA_H-paniculata_contig12919.1831.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig12919.1831.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 3.350e-18
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 DRALLVHLYQVTDGSNWRNIEDWLSSKDLEYWRGVTVNEEGRVVKLDLGGNNLCGPIPPELGKLGALE 204
            DR +LV LY  T+G+NW+N  +W +  DL  W GVTVN +GRVV+LDL  NNL G IPPELG L AL+
Sbjct:    5 DRDVLVALYNATEGANWQNSINWGTDADLSQWFGVTVNHQGRVVRLDLSFNNLRGHIPPELGNLAALQ 72
[Close]
BLAST of mRNA_H-paniculata_contig12919.1831.1 vs. uniprot
Match: A0A7X4EY54_9BACT (BIG2 domain-containing protein n=3 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7X4EY54_9BACT)

HSP 1 Score: 85.5 bits (210), Expect = 1.170e-17
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 DRALLVHLYQVTDGSNWRNIEDWLSSKDLEYWRGVTVNEEGRVVKLDLGGNNLCGPIPPELGKLGALEEL 210
            DR +LV LY  TDG NW N  +WL++  L  W GVT  +  RVV+LDLGGNNL GP+P ELG L  L  L
Sbjct:  431 DREVLVALYDATDGPNWSNAGNWLTAAPLGEWYGVTTGDADRVVRLDLGGNNLSGPLPAELGSLTTLAHL 500
[Close]
BLAST of mRNA_H-paniculata_contig12919.1831.1 vs. uniprot
Match: A0A6B0YVP7_9CHLR (SH3 domain-containing protein n=2 Tax=unclassified Caldilineaceae TaxID=1919254 RepID=A0A6B0YVP7_9CHLR)

HSP 1 Score: 85.5 bits (210), Expect = 1.170e-17
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 DRALLVHLYQVTDGSNWRNIEDWLSSKDLEYWRGVTVNEEGRVVKLDLGGNNLCGPIPPELGKLGALEELDLSM 222
            DR +LV LY+ TDG NW   ++WLS + +  W GVTV++ GRV+ L L  N L G IPPELG L  LEELDL++
Sbjct:  333 DRDVLVTLYEATDGDNWLENDNWLSRRPIGEWYGVTVDDSGRVIGLYLSENELSGTIPPELGYLTKLEELDLAI 406
[Close]
BLAST of mRNA_H-paniculata_contig12919.1831.1 vs. uniprot
Match: D7FSL6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL6_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.560e-17
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:    1 DRALLVHLYQVTDGSNWRNIEDWLSSKDLEYWRGVTVNEEGRVVKLDLGGNNLCGPIPPELGKLGALEELDL 216
            DRA LV LY  T+G++W+N ++W +  +L  W GV VN++GRVV L LG NNL GPIPPE+G L A+  L L
Sbjct:    5 DRAALVVLYVATNGTSWKNNDNWSTESNLSLWHGVKVNDQGRVVDLSLGYNNLRGPIPPEIGDLVAMTGLYL 76
[Close]
BLAST of mRNA_H-paniculata_contig12919.1831.1 vs. uniprot
Match: A0A6L7UJV8_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L7UJV8_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 2.170e-17
Identity = 43/79 (54.43%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:    1 DRALLVHLYQVTDGSNWRNIEDWLSSKDLEYWRGVTVNEEGRVVKLDLGGNNLCGPIPPELGKLGALEELDLSMNAFRG 237
            DRA L  LY+ T G NWR+  +WLSSK L  W GVTV++ G V  LDL  N L   +P ELG L  LE LDLS N  RG
Sbjct:  545 DRAALEALYRATGGINWRDSTNWLSSKPLSEWYGVTVDDSGCVTHLDLSNNQLSRALPSELGDLVKLEALDLSGNFLRG 623
[Close]
BLAST of mRNA_H-paniculata_contig12919.1831.1 vs. uniprot
Match: A0A845CVP7_9CHLR (SH3 domain-containing protein n=1 Tax=Caldilineaceae bacterium SB0662_bin_25 TaxID=2605257 RepID=A0A845CVP7_9CHLR)

HSP 1 Score: 84.7 bits (208), Expect = 2.180e-17
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:    1 DRALLVHLYQVTDGSNWRNIEDWLSSKDLEYWRGVTVNEEGRVVKLDLGGNNLCGPIPPELGKLGALEELDL 216
            DR +L+ LY+ TDG NW   ++WLSS+ +  W GVTV++ GRV+ L L  N L G IPP+LG L  LEELDL
Sbjct:  333 DRDVLITLYEATDGDNWLENDNWLSSRPIGEWFGVTVDDSGRVIGLYLSENELSGTIPPDLGYLTKLEELDL 404
[Close]
BLAST of mRNA_H-paniculata_contig12919.1831.1 vs. uniprot
Match: A0A6L7YH52_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7YH52_9CHLR)

HSP 1 Score: 82.8 bits (203), Expect = 2.980e-17
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    1 DRALLVHLYQVTDGSNWRNIEDWLSSKDLEYWRGVTVNEEGRVVKLDLGGNNLCGPIPPELGKLGALEELDLS 219
            DRA LV LY+ T G+ W    +WLS   +  W GVT N +GRV+ LDL GN L GPIP +LG L  LE L+LS
Sbjct:   94 DRAALVALYRATGGARWHTSTNWLSDTPIREWHGVTTNSDGRVMGLDLVGNQLSGPIPADLGNLTNLELLNLS 166
[Close]
BLAST of mRNA_H-paniculata_contig12919.1831.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 7.570e-17
Identity = 40/67 (59.70%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 DRALLVHLYQVTDGSNWRNIEDWLSSKDLEYWRGVTVNEEGRVVKLDLGGNNLCGPIPPELGKLGAL 201
            DR  LV L+  T G NW    +W +S  L  W+GV VNEEGRVV+LDL  NNL G IP ELGKLGAL
Sbjct:  191 DRDALVALFHATGGDNWTRKSNWCTSAKLGTWKGVKVNEEGRVVELDLSDNNLRGTIPVELGKLGAL 257
[Close]
BLAST of mRNA_H-paniculata_contig12919.1831.1 vs. uniprot
Match: D7G3R3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3R3_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.100e-16
Identity = 41/70 (58.57%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 DRALLVHLYQVTDGSNWRNIEDWLSSKDLEYWRGVTVNEEGRVVKLDLGGNNLCGPIPPELGKLGALEEL 210
            DR  L+ L+  T G+NWR   +W +S+ L  W GV VN EGRVVKL L  NNL G +PPELGKLGALE L
Sbjct:  286 DRDALITLFHETRGANWREKGNWGTSEVLGTWYGVDVNAEGRVVKLSLYNNNLQGLLPPELGKLGALEHL 355
[Close]
BLAST of mRNA_H-paniculata_contig12919.1831.1 vs. uniprot
Match: UPI00164C5C71 (leucine-rich repeat protein n=1 Tax=Butyricimonas sp. NSJ-56 TaxID=2763032 RepID=UPI00164C5C71)

HSP 1 Score: 82.0 bits (201), Expect = 1.930e-16
Identity = 39/78 (50.00%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:    1 DRALLVHLYQVTDGSNWRNIEDWLSSKDLEYWRGVTVNEEGRVVKLDLGGNNLCGPIPPELGKLGALEELDLSMNAFR 234
            DR  L+  Y  T G NW N  +W S K L  W GVT N +GRV+KL+L GNNL G IP  LGKL  L+ L L +   R
Sbjct:  489 DRETLIAFYNATGGQNWINNANWCSDKPLSEWYGVTCNGDGRVIKLELDGNNLIGNIPSGLGKLSELQYLGLGLGEER 566
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12919.1831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJV1_ECTSI3.350e-1858.82LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A7X4EY54_9BACT1.170e-1755.71BIG2 domain-containing protein n=3 Tax=Gemmatimona... [more]
A0A6B0YVP7_9CHLR1.170e-1754.05SH3 domain-containing protein n=2 Tax=unclassified... [more]
D7FSL6_ECTSI1.560e-1754.17Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6L7UJV8_9BACT2.170e-1754.43Uncharacterized protein (Fragment) n=1 Tax=Acidoba... [more]
A0A845CVP7_9CHLR2.180e-1754.17SH3 domain-containing protein n=1 Tax=Caldilineace... [more]
A0A6L7YH52_9CHLR2.980e-1753.42Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
D7FPS8_ECTSI7.570e-1759.70Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7G3R3_ECTSI1.100e-1658.57Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
UPI00164C5C711.930e-1650.00leucine-rich repeat protein n=1 Tax=Butyricimonas ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12919contigH-paniculata_contig12919:1191..4123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue4.2e-15
Seed eggNOG ortholog2880.D8LBY3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGs2R960@2759,COG4886@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.8667464-CDS-H-paniculata_contig12919:1190..12641622929017.8667464-CDS-H-paniculata_contig12919:1190..1264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12919 1191..1264 -
1691480701.1235352-CDS-H-paniculata_contig12919:1190..12641691480701.1235352-CDS-H-paniculata_contig12919:1190..1264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12919 1191..1264 -
1622929017.8783643-CDS-H-paniculata_contig12919:3960..41231622929017.8783643-CDS-H-paniculata_contig12919:3960..4123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12919 3961..4123 -
1691480701.1400871-CDS-H-paniculata_contig12919:3960..41231691480701.1400871-CDS-H-paniculata_contig12919:3960..4123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12919 3961..4123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12919.1831.1prot_H-paniculata_contig12919.1831.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12919 1191..4123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12919.1831.1

>prot_H-paniculata_contig12919.1831.1 ID=prot_H-paniculata_contig12919.1831.1|Name=mRNA_H-paniculata_contig12919.1831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
DRALLVHLYQVTDGSNWRNIEDWLSSKDLEYWRGVTVNEEGRVVKLDLGG
NNLCGPIPPELGKLGALEELDLSMNAFRG
back to top

mRNA from alignment at H-paniculata_contig12919:1191..4123-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12919.1831.1 ID=mRNA_H-paniculata_contig12919.1831.1|Name=mRNA_H-paniculata_contig12919.1831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2933bp|location=Sequence derived from alignment at H-paniculata_contig12919:1191..4123- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAGGGCATTGCTTGTTCATTTGTATCAGGTCACAGATGGTTCTAATTG
GCGCAACATTGAGGACTGGCTCAGTTCCAAAGACCTGGAATATTGGCGTG
GCGTGACGGTCAACGAGGAGGGACGTGTCGTCAAGCTGGATCTGGGGGGA
AACAATTTATGCGGTGAGAACAAACATTGTGCACACAGTAAAGTGGCCAA
TATGAGTTTTTACTGACGAAGAATGTTTCAATTTTGTCACCTCCGTAGCC
ATAGGCCTCTCGAGGTCGAAACCTATTTTAATTAAGAGCTATCTGTTTAG
AGCCTTTTAAGGTACCCCGATTTTTGGCTCATGTTGATTCGTTGCACCAA
AAGCGCCGCTCTGCTTACTTCGGAAAAAAAAAAGGCATTATTTCACAGCT
CGGACGAACGTCCTCCATCCATCGATGAAGGATGTCGCGGTTTTTGGAAC
TATACCAGCACGATGATACCTGGTGCCTTCCGAAACCCACAAATTGATAG
CATGGATATTCTGCACACCTTCGTGGAGTTTTTTTTTTTAACCCTAACCC
TAACAATCGTTATATCCAGAATACGGTTGTCCTATCCAACCACCGCTCCG
GATGGGTTCCGGTCAAGCACTAAGGTGTAGTCACCTAGACGGCAAATCAC
TAACGTTTTCTATCCTATTCATGAACTCACTTGTTCTGTTTGAACCACCG
TACTTTAATCGCTTACTTGAAGAAAACAGCGCAGCAGCGCTAGAAGGGGT
TGTAGAAAATGATCGAACGAGGATTGCACAGCAAGAGCAGCTAATGTAGC
TGGCCGCATGGTCCGTGAGCTAATGTGGCACCTTCTGCATGCATGACTTG
ATTAGTGCCGTAAGGGCGTTTTTTGTTTGAACTCGTGCCCTGATGTGCAG
CTGTGTGGAGACATCACAGATACCCACAGCTGTAAAGTGATTCACTTAGT
GTGGCCTGTGCCTGCGCTCCAATCCCACTATTTTAATGTCGTGGTGACAC
CCAATTTCTTTTGTATGGATAACAGCGACGATAGTATTTGCCAACCAAGT
GCTCGAGGTGTGGGACCACCATGCCAAGAAAACCCTAGAGTTTGCTAGGT
GCTGTACAGGAGGACAAACCAACTGCATATGTGCGGCTTCCCGCGTATGG
ATTGTCGAGCGCTGCAGTCGTGGGACACAGAGCCATGCCGTCTTTACTGA
GCTGTCTAACTACGGTAGCTTTCTATTCCCGTAATCATGTCCAGTGTTGG
TGCTTTAGGGTGCCCGTGTTGAAGGGTTCATCACCCATGTTCTTCATTGT
TCATTTTGTTCATGAATATAGCAACACATGTCAGCTCGAATTTGCCACGT
TACATGTCGATCCGGCATGTACAGTACGGGTTGGTCGTGATAATGAAAAT
ATTTAGCTAAAGAACAGACCACACGACTCGAAACGAACAAGTTCCGCTGT
GACAGGTGATGAAAACTTGACTGCAAGCTTGACAGTGTCGAATGTCTCCT
CGCCGACATCGTGAGATAGATTCCAGTGCATGATTGTGTGTCGCATCACA
ACCTCTGTGAATATGGTGGTCACGTTCGACATGCGTCTGACAAGTGAATT
ATCGTTGTGGAAAAGTTCTCCCCCCATCATAAATTAACACAGAACTACAA
CCAGAGGTTGCTTACCACCATGCGCCCTAAGAACACCTCGAGCGAAGATC
GATTTTTTTCTCTTTTAGAAATGAAAAGTATACCCAGGGGTGTTTTCACA
GCCCCAGGATGATGAAACTATTCACGTCAATGTGCGGGGGCGTTTTCAGC
GCTGGGTTGATCGCGAGAGTATTCCTCCCGGATATGATTACACGTAGCAG
AGAATTTCTGGTACGCAGGGCCCAAGCAATCTGTATATATTTGTACACAA
AAACGCAGAGCACACATACTAGCCTGATGCATGGCATCCCTGAAAGTAGC
ACAGGTATGGCAGTATACATTTGCTCAATTTTGTCAAGAACTCATCGCCC
CCAGGGCGTATAATCTTGTTCGGTATAAATTCAATCACCCTGGGGCATTC
TCAAGGCCACCAGGGCATTTTTTGTTTTCAGTTGTCTGATATTCTGCCCC
GGGGCGTTCGCATGGCAGGGGCATTCTCAGACCGCTCTAGGTTTATTCTG
CAGTGATAGGAGGCTATCATCCACGCGTTTTTTTCACGTCCTTCGACGTG
CTCGAGCGAATGTTTTTCTGTAGGCTGTGTGTCGATCATTTTAGTTGGCA
TATCCAATATAATTAAGACATTACTGATATATCGATCATGTATTGGGTCG
AGCGAAGTAAGACGGCCACGCGAAGGTCAGGTGCCTGCGAAGTACGAGGA
GGCGAGTGGCTTGCCGCGAGCCCAACGACCTCCCCCGGCTTGTAACGGGG
GTGGATGCAGAAAAGATCCGCGTTTTTGTTTCATCTTTCTTCAATATCGA
CAAAGTACAAATAGCTCCAGAGCTCGGCACTCGCATGAATCAATCGATTA
TTTTTCCTACAGAAGGGAGAACGTGAGTTCAAAGTACGATATAGCGTCAA
ATGAAAAATGGTAGACTTGTGCAACGGTTCTGTAGAGCTTTCGCTGTCGG
TAAATAGAGCGAGAAAAGACCGTGCGACGCAGAATGTCATCGGCGTGCCT
AGGAGCCTCAGTGTCGTGGTGCTTAGTGTTTTGCATATTGTCATGCTAAT
AAATGATGACGATATAATGTATACACTCAATGCACGCCTCTCTGTGTTTG
TATGTATATACATATTGGTAATGTTTTGACGCCGATATACAGCCTCATTG
ATTCGTCACCTGGAAATTTCATACAGCTACATCAAATTTCCTCGATCTGT
GACATACAGGTCCAATACCGCCAGAGCTTGGGAAGCTTGGCGCGTTAGAG
GAGCTTGACCTGAGCATGAATGCATTCAGGGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12919:1191..4123-

>mRNA_H-paniculata_contig12919.1831.1 ID=mRNA_H-paniculata_contig12919.1831.1|Name=mRNA_H-paniculata_contig12919.1831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig12919:1191..4123- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAGGGCATTGCTTGTTCATTTGTATCAGGTCACAGATGGTTCTAATTG
GCGCAACATTGAGGACTGGCTCAGTTCCAAAGACCTGGAATATTGGCGTG
GCGTGACGGTCAACGAGGAGGGACGTGTCGTCAAGCTGGATCTGGGGGGA
AACAATTTATGCGGATAGGGCATTGCTTGTTCATTTGTATCAGGTCACAG
ATGGTTCTAATTGGCGCAACATTGAGGACTGGCTCAGTTCCAAAGACCTG
GAATATTGGCGTGGCGTGACGGTCAACGAGGAGGGACGTGTCGTCAAGCT
GGATCTGGGGGGAAACAATTTATGCGGTCCAATACCGCCAGAGCTTGGGA
AGCTTGGCGCGTTAGAGGAGCTTGACCTGAGCATGAATGCATTCAGGGGT
GTCCAATACCGCCAGAGCTTGGGAAGCTTGGCGCGTTAGAGGAGCTTGAC
CTGAGCATGAATGCATTCAGGGGT
back to top