mRNA_H-paniculata_contig12910.1829.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12910.1829.1
Unique NamemRNA_H-paniculata_contig12910.1829.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12910.1829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12910contigH-paniculata_contig12910:4217..4947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size731
Cds size603
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.7194452-UTR-H-paniculata_contig12910:4216..43441622929017.7194452-UTR-H-paniculata_contig12910:4216..4344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12910 4217..4344 +
1691480701.0319405-UTR-H-paniculata_contig12910:4216..43441691480701.0319405-UTR-H-paniculata_contig12910:4216..4344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12910 4217..4344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.7358754-CDS-H-paniculata_contig12910:4344..49471622929017.7358754-CDS-H-paniculata_contig12910:4344..4947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12910 4345..4947 +
1691480701.0425553-CDS-H-paniculata_contig12910:4344..49471691480701.0425553-CDS-H-paniculata_contig12910:4344..4947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12910 4345..4947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12910.1829.1prot_H-paniculata_contig12910.1829.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12910 4345..4947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12910.1829.1

>prot_H-paniculata_contig12910.1829.1 ID=prot_H-paniculata_contig12910.1829.1|Name=mRNA_H-paniculata_contig12910.1829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp
MMPSAVPEVCQTSPAPIGETNLASSSSTVSTSSSSDSSLSSSSSSTADQS
EGRKQQSGAPRILTTTTGRASAPAAGGSASAPKARLNASSAPKKARVKSR
KPAPPRPSQDTGKTLRQFLFHLVERGVVAAPWIQKIDELVSDFQAASNIR
NTASVTTLPNRSARASPDSLLLPYPPFLQLPMIAPFLQAAGAVAAAAAET
V
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mRNA from alignment at H-paniculata_contig12910:4217..4947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12910.1829.1 ID=mRNA_H-paniculata_contig12910.1829.1|Name=mRNA_H-paniculata_contig12910.1829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=731bp|location=Sequence derived from alignment at H-paniculata_contig12910:4217..4947+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAAACAGGAATCGCTGTATAGCCCTGGAAATTTGAATTGGGTGTTTTG
GTGTTGATGGTGATTTCAGCTGAATCCTGGAATACTGGCTGACTGACTGC
TGTACCCTTAGATACTAGATAAAGACCGATGATGCCCTCGGCGGTCCCAG
AAGTATGCCAAACAAGCCCTGCTCCAATAGGGGAGACGAATCTTGCCTCG
AGCTCTTCCACCGTTTCCACCTCCTCCTCCTCTGACAGTAGCCTGTCCAG
CAGCTCCTCTTCTACAGCGGACCAAAGCGAGGGCAGGAAACAGCAATCCG
GTGCGCCGAGAATCCTCACAACCACCACCGGTCGCGCGTCGGCTCCAGCG
GCCGGCGGCAGCGCTTCGGCTCCGAAGGCCCGCCTGAACGCGTCCTCAGC
CCCGAAGAAGGCCCGCGTCAAAAGCCGGAAACCCGCACCTCCGCGGCCGA
GCCAAGACACGGGGAAAACGCTCAGGCAGTTCCTTTTTCACCTTGTCGAG
AGAGGAGTAGTGGCGGCCCCATGGATCCAGAAGATAGATGAGCTGGTATC
GGATTTTCAAGCAGCGTCCAACATCAGAAATACTGCTAGTGTTACCACCC
TCCCAAACAGGAGTGCTCGGGCTTCGCCTGACTCGCTCTTACTTCCATAT
CCGCCGTTCCTGCAACTGCCCATGATCGCACCATTTCTGCAAGCCGCGGG
GGCGGTGGCAGCGGCGGCGGCGGAAACGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig12910:4217..4947+

>mRNA_H-paniculata_contig12910.1829.1 ID=mRNA_H-paniculata_contig12910.1829.1|Name=mRNA_H-paniculata_contig12910.1829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig12910:4217..4947+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCCCTCGGCGGTCCCAGAAGTATGCCAAACAAGCCCTGCTCCAAT
AGGGGAGACGAATCTTGCCTCGAGCTCTTCCACCGTTTCCACCTCCTCCT
CCTCTGACAGTAGCCTGTCCAGCAGCTCCTCTTCTACAGCGGACCAAAGC
GAGGGCAGGAAACAGCAATCCGGTGCGCCGAGAATCCTCACAACCACCAC
CGGTCGCGCGTCGGCTCCAGCGGCCGGCGGCAGCGCTTCGGCTCCGAAGG
CCCGCCTGAACGCGTCCTCAGCCCCGAAGAAGGCCCGCGTCAAAAGCCGG
AAACCCGCACCTCCGCGGCCGAGCCAAGACACGGGGAAAACGCTCAGGCA
GTTCCTTTTTCACCTTGTCGAGAGAGGAGTAGTGGCGGCCCCATGGATCC
AGAAGATAGATGAGCTGGTATCGGATTTTCAAGCAGCGTCCAACATCAGA
AATACTGCTAGTGTTACCACCCTCCCAAACAGGAGTGCTCGGGCTTCGCC
TGACTCGCTCTTACTTCCATATCCGCCGTTCCTGCAACTGCCCATGATCG
CACCATTTCTGCAAGCCGCGGGGGCGGTGGCAGCGGCGGCGGCGGAAACG
GTGATGATGCCCTCGGCGGTCCCAGAAGTATGCCAAACAAGCCCTGCTCC
AATAGGGGAGACGAATCTTGCCTCGAGCTCTTCCACCGTTTCCACCTCCT
CCTCCTCTGACAGTAGCCTGTCCAGCAGCTCCTCTTCTACAGCGGACCAA
AGCGAGGGCAGGAAACAGCAATCCGGTGCGCCGAGAATCCTCACAACCAC
CACCGGTCGCGCGTCGGCTCCAGCGGCCGGCGGCAGCGCTTCGGCTCCGA
AGGCCCGCCTGAACGCGTCCTCAGCCCCGAAGAAGGCCCGCGTCAAAAGC
CGGAAACCCGCACCTCCGCGGCCGAGCCAAGACACGGGGAAAACGCTCAG
GCAGTTCCTTTTTCACCTTGTCGAGAGAGGAGTAGTGGCGGCCCCATGGA
TCCAGAAGATAGATGAGCTGGTATCGGATTTTCAAGCAGCGTCCAACATC
AGAAATACTGCTAGTGTTACCACCCTCCCAAACAGGAGTGCTCGGGCTTC
GCCTGACTCGCTCTTACTTCCATATCCGCCGTTCCTGCAACTGCCCATGA
TCGCACCATTTCTGCAAGCCGCGGGGGCGGTGGCAGCGGCGGCGGCGGAA
ACGGTG
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