mRNA_H-paniculata_contig1291.1827.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1291.1827.1
Unique NamemRNA_H-paniculata_contig1291.1827.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1291.1827.1 vs. uniprot
Match: D8LBN1_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN1_ECTSI)

HSP 1 Score: 642 bits (1656), Expect = 3.430e-207
Identity = 478/1175 (40.68%), Postives = 595/1175 (50.64%), Query Frame = 2
Query:  149 TLRSTFYFLGALDAALYLSVLPAILREVLHEGDENDSGERTFSPPSSSSVAMAVALLVGAYYAGRLVTLAAASQVVKFGCCSGGNTANSSL--RIAEMGATLCLSVATYLVSGMVVVVRHRS----------LWWLAALRLLSGAVAAAHRVLALRD-------EHLSTSCSLADQMGKPEIERGYPAAVAGLVVGCAVSGVLFTPGH-ARPALRLSLAATALHIPSFILLLLI-WRQRRSSSRGREGAXXXWSALANSDVGSGNLVEXXXXXXXXXXATAADVERSTNHSENGICILQQAASVGGGEVAAIGSALGKNKGDEEDSGACEVKVPDRYLRGCRGDPVEAERRWRLTLEWRATEKVDEVLREPQPHFDVIKQHYPHFIHRRALNGCPVWVELPGRIDLPAIRSSGVSSESLKRHYVFVTEYLWGIVEPDFDRGQAVTVLDVEGLGLRDLAGEALGFVKQATTIVQDHYVERSNRMFIINAPSYFSMIWRVIRPMLNERTQAKIGIINADKAKISAALLECIPSENLPKQYGGTCPLDLGESEEEKDLRAYVASITPSLSGGDVIEEGDQVEVDLLKDFVVPGIG-----------------PRAKEGGEAVDSWQKSGVHLTANDSAVVQPSLGNIDDGRMVQGGNGSTFSGSGDGVGVSMPAQQRSATRRVLKKVGGALGWAGDKLAWRRSTGPSVAHLGEENAFVYDVDLQQWILKE----RNRTSANGARGRMEGSGADNSTGQVKPSRAPRGRGESMGSNTSEEMTVLAIQAAHYSLNETVTMKLSPVPS-APLSMPETTGKAAAVANTRYGSRRPRDTSNASTTEHNETTELHHGM-GRHEDELVVSCPCVKPFVGRRRCGLVTTTCDPSFVFICYAVSVAVRECLPVWALAGTEAGGLGVGPGDGLIASPPLIGLAIAAGILIAEAGRAVVSSTWCRARYFGDGEWQCSGQ-----------VAAVRGRFVTVTILTLAHAIKQASVSGVAA--MPFAVVWVAVVWVVAANQTVLRLCHEKPGCSQPWG-----------------RPVHGVVAGHEEVH-------------RCDGNTARDERMPPPRPSLLTVAPRRSFLLGDVLASSGGPLLLALGLKSGWPWPFDASVWFPLCLCIDLWISFGAQWAAKRHTGFLGG 3412
            T+    +F  AL  AL+L VLP+++ ++L  G E D+           S A  VA+L+ +YY GR  TL AA ++    C SG + A +++   +  +G  L LS + Y   G+VVVV              L +    R L+GA+AA HR+ A R        E   T+ + A ++G    +     AV GLV GCA++G LF     +RP L L LAA A H  +  L+LL+ WR    S  G       +S +  +  GS   VE            + D  R                    G+ AA  +A     G EE      V +P RYLRGC GDPVEAERRWRLTLEWRA E++DEVLREPQPHF++IK+HYPH+IHRRA NGCPVW+ELPGRIDLPAIRS+GVS E+L+RHYVFVTEY+WG++EPDF+ GQAVTVLDV+GLG+RDLAGEALGFVKQAT IVQDHYVERSNRMFI+NAPSYFS+IWRVIRPMLNERTQAKIGIIN D  KI+AALLECI  ENLP+QYGGTCPLDLGESEEE DLR YVASI                                               P A+ GG      + +G+   A   AV +   G  + G  V G              +    +   A RRVL  V GA         WRRST   VAHLG+EN F YD +  +W+L++                          GQ   +R  RG      S +SE+MTVLAIQAAH+SL E   +KLSPVPS +P  +  ++G AAA  +  + SR        +        E HH    +    L V CPC++P +GRR          P    + YA S AVRE LPVW LAG EAGGLG        ASPP +GL  AAG  +A AGR   S   C A+Y G                    + AV  R  +V +L   + + +     VAA  +P AV+W+AV  VVAAN   L LC                            RP+          H              C        R P  R S L  A   +  +GDVL S  GPL+LAL + +G   P + S+W  LCLC DLW+  GA+ A  RH   LGG
Sbjct:   10 TVACVLFFQDALSGALFLPVLPSLVGQLL--GMERDT--------VGFSTAWVVAVLLASYYVGRSGTLTAAVRL----CASGSSRAPAAIPPSLLTVGVLLVLSASAYTGCGIVVVVVDHEQQLTTSSLYVLLYFCLFRALTGALAAGHRMSACRCLDHAALLESAPTTITTAAKLGSRSWQESA-GAVGGLVAGCALAGGLFEYSDPSRPTLLLCLAAAAAHAAALPLVLLVAWRNCCRSRSGTVDGGGGYSTVQGTPGGSDAEVELMGRPPWSARDDSFDGGR--------------------GDSAAAAAAATPGAGSEERV----VDIPGRYLRGCAGDPVEAERRWRLTLEWRAKERIDEVLREPQPHFELIKRHYPHYIHRRARNGCPVWIELPGRIDLPAIRSAGVSPEALQRHYVFVTEYMWGVLEPDFENGQAVTVLDVQGLGMRDLAGEALGFVKQATAIVQDHYVERSNRMFIVNAPSYFSLIWRVIRPMLNERTQAKIGIINTDAKKIAAALLECIAPENLPRQYGGTCPLDLGESEEELDLRTYVASIATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRARSEPTARAGGVGP---RNNGLPAAAAAGAVTK-GRGPAESG--VLGXXXXXXXXXXXXXXLVAAGRPPGAARRVLGSVRGAXXXXXXXXXWRRST---VAHLGQENGFQYDSEQHRWVLRDDMAGXXXXXXXXXXXXXXXXXXXERVGQTTSTRRERGA-----SVSSEDMTVLAIQAAHHSLVE-AGLKLSPVPSESPAVLGSSSGVAAARDDGGFPSRLSYGGKPGTFPGGIAAGEDHHYCYPQPVSSLSVPCPCLRP-LGRR-------ASRPDVATVLYASSAAVREALPVWLLAGVEAGGLG--------ASPPRVGLVFAAGARVAAAGRGA-SGCCCGAQYPGQAXXXXXXXXXXXXXXXXRLLYAVWTRLASVVVLGAVYLLPRIVPEAVAAAFIPPAVLWLAVAAVVAANHASLELCTXXXXXXXXXXXXXXXXXXXXXXXXXXRRPMFVSRTTSSSSHGPSDERTRSTSSASCGSGFVGASRGPRARGSSLATASGSNLFVGDVLGSIAGPLVLALAMWAGQRLPLEPSLWLALCLCGDLWLVAGAREAEPRHATLLGG 1113          
BLAST of mRNA_H-paniculata_contig1291.1827.1 vs. uniprot
Match: A0A6H5K979_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K979_9PHAE)

HSP 1 Score: 528 bits (1359), Expect = 5.830e-167
Identity = 385/897 (42.92%), Postives = 489/897 (54.52%), Query Frame = 2
Query:  149 TLRSTFYFLGALDAALYLSVLPAILREVLHEGDENDSGERTFSPPSSSSVAMAVALLVGAYYAGRLVTLAAASQVVKFGCCSGGNTANSSL--RIAEMGATLCLSVATYLVSG-MVVVVRHRS---------LWWLAALRLLSGAVAAAHRVLALRD-------EHLSTSCSLADQMGKPEIERGYPAAVAGLVVGCAVSGVLFTPGH-ARPALRLSLAATALHIPSFILLLLIWRQRRSSSRGREGAXXX-WSALANSDVGSGNLVEXXXXXXXXXXATAADVERSTNHSENGICILQQAASVGGGEVAAIGSALGKNKGDEEDSGACEVKVPDRYLRGCRGDPVEAERRWRLTLEWRATEKVDEVLREPQPHFDVIKQHYPHFIHRRALNGCPVWVELPGRIDLPAIRSSGVSSESLKRHYVFVTEYLWGIVEPDFDRGQAVTVLDVEGLGLRDLAGEALGFVKQATTIVQDHYVERSNRMFIINAPSYFSMIWRVIRPMLNERTQAKIGIINADKAKISAALLECIPSENLPKQYGGTCPLDLGESEEEKDLRAYVASITPSL----------------SGGDVIEEGDQVEVDLLKDFVVPGIGPRAKEGGEAVDSWQKSGVHLTANDSAVVQPSLGNIDDGRMVQGGNGSTFSGSGDGVGVSMPAQQRSATRRVLKKVGGALGWAGDKLAWRRSTGPSVAHLGEENAFVYDVDLQQWILKERNRTSANGARGRMEGSGADNS----TGQVKPSRAPRGRGESMGSNTSEEMTVLAIQAAHYSLNETVTMKLSPVPS-APLSMPETTGKAAAVANTRYGSRRPRDTSNASTTEHNETTELHHGM--GRHEDELVVSCPCVKPFVGRRRCGLVTTTCDPSFVFICYAVSVAVRE 2707
            T+    +F  AL  AL+L VLP ++ ++L  G E D+             A  VA+L+ +YYAGR  TL AA   V+F C SG + A +++   +  +G  L LS + Y   G +VVVV H           L +   LR L+GA+AA HR+ ALR        E   T+ + A ++G    +     AV GLV GC ++G LF     +RP L L LA                             XXX +  +  +  GS   VE            + D  R  +++  G        + G G    +                  V VP RYLRGC GDPVEAERRWRLTLEWRA E++DEVLREPQPHF++IK+HYPH+IHRRA NGCPVW+ELPGRIDLPAIRS+GVS E+L+RHYVFVTEY+WG++EPDF+ GQAVTVLDV+GLG+RDLAGEALGFVKQAT I+QDHYVERSNRMFI+NAPSYFS+IWRVIRPMLNERTQAKIGIIN D  KI+AALLECI  ENLP+QYGGTCPLDLGESEEE DLRAYVASI  +                 SG + +   ++ E ++  DF      P A+ G       + +G+   A   AV Q   G  + G  V GG G+    +GDG G+    +   A RRVL                RRST   VAHLG+EN F YD +  +W+L++     + G  G +E   A        GQ   +R  RG      S +SE+MTVLAIQAAH+SL E   +KLS VPS +P  +  ++G  AA  +  + SR      + +        E HH     +    L V CPC++P +GRR          P    + YA S A R 
Sbjct:   10 TVACVLFFQDALSGALFLPVLPYLVGQLL--GMEGDT--------VGFLTAWVVAVLLASYYAGRSGTLTAA---VRF-CSSGSSRAPAAIPPSLLTVGVLLVLSASAYAGCGTIVVVVDHEQQLTTSRVYVLLYFCLLRALTGALAAGHRMSALRCLDHAALLESAPTTTTTAAKLGSRSWQESA-GAVGGLVAGCTLAGGLFEYSDPSRPTLLLCLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYTVQGTPGGSDAEVELMGRPPWSARDDSFDGGRGDSNAAAG--------TPGAGRKERV------------------VDVPGRYLRGCAGDPVEAERRWRLTLEWRAKERIDEVLREPQPHFELIKRHYPHYIHRRARNGCPVWIELPGRIDLPAIRSAGVSPEALQRHYVFVTEYMWGVLEPDFENGQAVTVLDVQGLGMRDLAGEALGFVKQATAIIQDHYVERSNRMFIVNAPSYFSLIWRVIRPMLNERTQAKIGIINTDAKKIAAALLECIAPENLPRQYGGTCPLDLGESEEETDLRAYVASIATAAXXXXXXXXXXXXXXXXSGLEALRSNEEAEEEVEVDFRARS-EPSARAGEVGP---RNNGLAAAAAARAVTQ-GRGPAESG--VLGGGGAGLEETGDG-GLVAAGRPPGAARRVLXXXXXXXXXXXXXXXXRRST---VAHLGQENGFQYDSEQHRWVLRDEMGGGSGGRAGAVEWGDASERGGERVGQTASTRRERGA-----SVSSEDMTVLAIQAAHHSLAE-AGLKLSSVPSESPAVLGSSSGVTAARDDGGFPSRLSYGGKHETFLGGVAAGEDHHCYCYPQRVSSLGVPCPCLRP-LGRR-------ASRPDVATVLYASSAAARR 840          
BLAST of mRNA_H-paniculata_contig1291.1827.1 vs. uniprot
Match: A0A7S3Y7R1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7R1_HETAK)

HSP 1 Score: 253 bits (646), Expect = 4.190e-69
Identity = 197/585 (33.68%), Postives = 275/585 (47.01%), Query Frame = 2
Query:  641 RGYPAAVAGLVVGCAVSGVLFTPGHARPALRLSLAATALHIPSFILLLLIWRQRRSSSRGREGAXXXWSALANSDVGSGNLVEXXXXXXXXXXATAADVERSTNHSENGICILQQAASVGGGEVAAIGSALGKNKGDEEDSGACEVKVPDRYLRGCRGDPVEAERRWRLTLEWRATEKVDEVLREPQPHFDVIKQHYPHFIHRRALNGCPVWVELPGRIDLPAIRSSGVSSESLKRHYVFVTEYLWGIVEPDFDRGQAVTVLDVEGLGLRDLAGEALGFVKQATTIVQDHYVERSNRMFIINAPSYFSMIWRVIRPMLNERTQAKIGIINADKAKISAALLECIPSENLPKQYGGTCPLDLGESEEEKDLRAYVASITPSLSGGDVIEEGDQVEVDLLKDFVVPGIGPRAKEGGEAVDSWQKSGVHLTA-NDSAVVQPSLGNIDDGRMVQGGNGSTFSGSGDGVGVSMPAQQRSAT---RRVLKKVGGALGWAGDKLAWRRSTGPSVAHLGEE-NAFVYDVDLQQWILKERNRTSANGARGRMEGSGADNSTGQVKPSRAPRGRGESMGSNTSEEMTVLAIQAAH 2380
            + Y A  AGL++G ++S  L+        L   LAA    I +++ LL    Q +      +G    W  LA +  GS                +  D   +    E G+ +   AA+ G     A G+AL                 PDRY+RGC GD  EA RRW LTL WR  + VD +L EPQP+F VIK++YPHF ++R  NGC  + E  GR D+ A+R+ GV+  +L RHYVFV+E+LW  +E D D  QA+T++D+EG G     G+   F +Q ++++Q HYVERSN++F+INAP +F+MIW+V+RPML+E TQ KI I    + +    LL  +  EN+P +YGGTC      SE EK +  +V     +   G    EGD    D +K           + GG A  S   S V      D A+ Q    +I +          T            PA  R+ T   +      GG L W      +RR   P VAHLG   NAF YD + ++W++                      +  Q +  + PR   E       +E TVLAIQAAH
Sbjct:   53 KEYSAWYAGLLIGFSLSCGLYDSSMTHSTLLSCLAAVVFLILAYMALL----QPKPLILFADGWSACWDRLAAALPGS----------------STDDGFAALGDPEGGVPLPAAAAAAG---PTAGGAAL-----------------PDRYIRGCDGDLEEARRRWALTLRWRREQNVDGILDEPQPYFFVIKKYYPHFTYKRGRNGCVTYYEQVGRADIEAMRARGVTIAALVRHYVFVSEFLWRRIEAD-DDAQAITIMDIEGCGFSQFKGDTKEFFQQCSSVIQSHYVERSNKIFVINAPGWFNMIWKVVRPMLHENTQRKISICGKGRYE---ELLAYVGPENVPAEYGGTCRDAFYNSELEKPMHDFVREKNQASPLGLYTGEGD----DEMK-----------QGGGSAQSSADDSFVSAPEWMDQAIQQQRSVDIIEEEF------GTRPEETRKARPPAPALARARTDDSQLSTDSNGGGL-WGRVLRPFRRGRAP-VAHLGSSANAFYYDTERREWVVT--------------------GTPSQPQHRKTPRDSEE-------DEATVLAIQAAH 543          
BLAST of mRNA_H-paniculata_contig1291.1827.1 vs. uniprot
Match: A0A4D9D0V4_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0V4_9STRA)

HSP 1 Score: 248 bits (632), Expect = 3.080e-64
Identity = 173/486 (35.60%), Postives = 239/486 (49.18%), Query Frame = 2
Query: 1076 VKVPDRYLRGCRGDPVEAERRWRLTLEWRATEKVDEVLREPQPHFDVIKQHYPHFIHRRALNGCPVWVELPGRIDLPAIRSSGVSSESLKRHYVFVTEYLWGIVEPDFD-RGQAVTVLDVEGLGLRDLAGEALGFVKQATTIVQDHYVERSNRMFIINAPSYFSMIWR---------------------------------------------VIRPMLNERTQAKIGIINADKAKISAALLECIPSENLPKQYGGTCPLDLGESEEEKDLRAYVASITPSLSGGDVIEEGDQVEVDLLKDFVVP----GIGPRAKEGGEAVDSWQKSGVHLTANDSAVVQPSLGNIDDGRMVQGGNGSTFSGSGDGVGVSMPAQQRSATRRVLKKVGGALGWAGDKLAWRRSTGPSVAHLGEENAFVYDVDLQQWIL-KERNRTSANGARGRMEGSGADNSTGQVKPSRAPRGRGESMGSNTSEEMTVLAIQAAH 2380
            +++P RY+RGC GD VEA RRW+ TL WRA E VD +LREPQ +F +IK+ YPHF+HRR   G PV+ EL G I+L  +++ GV+ + + R+Y+F+TEY+W  ++P+ D RG  V++LDV  +G+ DL G+AL F+K A+ +VQ HYVERS +MFI+NAP++FS++W+                                             VI P+L+E T+ KI I+  D A +    LE I   +LP  YGG  PL LGE+ EE D RAYV  +   L G     E ++VEV   K   +P    G G R ++ G         G H   +D             G  V+GG+         G GV       +  R + +  GG        L    +T    A+LG EN FVYD   +QW+L +E         R   E                P GRG     +  EE  + AIQAAH
Sbjct:  226 LRIPPRYVRGCNGDRVEAARRWKETLAWRAAEGVDTILREPQRNFALIKECYPHFLHRRDRGGRPVYYELLGHINLKKLKARGVTLDEVVRYYIFLTEYIWNKLQPEDDERGAMVSILDVAHVGIMDLRGDALEFLKAASRVVQQHYVERSYKMFILNAPAWFSVLWKSGKLAEMSLLGAGAEEGNCYEWERCTQMGNVSSDSNDCSTMRSPQVIAPLLHENTRRKINILGKDHAPV----LEVIAPHHLPVAYGGNDPLALGEAPEEVDFRAYVQRVNSGLEGR---AEAEEVEVGGGKAGSLPTGSSGTGSRERKEG---------GRHAEVDDG------------GEPVRGGDEL-------GRGVWREGLLGAGERAMARVAGGLRTLRPAFLTPLSAT--QRANLGRENRFVYDEHRRQWVLIEEEXXXXXXXXRWERE--------------HRPHGRGRGA-QDMEEERLIRAIQAAH 659          
BLAST of mRNA_H-paniculata_contig1291.1827.1 vs. uniprot
Match: I2CQU5_NANGC (Phosphoinositol transporter n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQU5_NANGC)

HSP 1 Score: 215 bits (547), Expect = 3.660e-58
Identity = 114/274 (41.61%), Postives = 166/274 (60.58%), Query Frame = 2
Query: 1004 GEVAAIGSALGKNKGDEEDSGACEVKVPDRYLRGCRGDPVEAERRWRLTLEWRATEKVDEVLREPQPHFDVIKQHYPHFIHRRALNGCPVWVELPGRIDLPAIRSSGVSSESLKRHYVFVTEYLWGIVEPDFDRGQAVTVLDVEGLGLRDLAGEALGFVKQATTIVQDHYVERSNRMFIINAPSYFSMIWRVIRPMLNERTQAKIGIINADKAKISAALLECIPSENLPKQYGGTCPLDLG------ESEEEKDLRAYVASITPSLSGGDVIEE 1807
            G V   GS +G+   +EE     E  +P R++ GC GD  EA RRW LT EWR     D +L EPQP+FD+IKQ YP +     +NG PV+ E  G++D P +R +G   + L RHYV VTE+ W  + PD +  + +TV  VEG+G+RDLAGEA  F++++  ++ +HY ERS  + I NAPS+F+++W++IRPM+NERTQ K+ I++  K +    L E IP EN+P +YGG      G      +S +E  LR +V ++        VI++
Sbjct:   79 GRVGTPGSVMGRGAAEEE-----ERPLPQRFIDGCLGDMTEAMRRWNLTCEWRREYGTDGILDEPQPYFDLIKQCYPSWYCGEGINGDPVYWERSGQVDQPRMRVAGCGIDELLRHYVMVTEFCWVKLYPD-ETKKTITVFSVEGVGIRDLAGEAFDFLRRSIHLISEHYPERSAVIMITNAPSWFAVLWKIIRPMVNERTQKKVKIVS--KKETLECLKEFIPEENIPVEYGGKLRFGDGVDTARWKSPQEVALREHVLAVNKKYGVEMVIDD 344          
BLAST of mRNA_H-paniculata_contig1291.1827.1 vs. uniprot
Match: A0A7S4DBX9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBX9_HETAK)

HSP 1 Score: 218 bits (555), Expect = 4.390e-58
Identity = 110/235 (46.81%), Postives = 158/235 (67.23%), Query Frame = 2
Query: 1082 VPDRYLRGCRGDPVEAERRWRLTLEWRATEKVDEVLREPQPHFDVIKQHYPHFIHRRALNGCPVWVELPGRIDLPAIRSSGVSSESLKRHYVFVTEYLWGIVEPDFDRGQAVTVLDVEGLGLRDLAGEALGFVKQATTIVQDHYVERSNRMFIINAPSYFSMIWRVIRPMLNERTQAKIGIINADKAKISAALLECIPSENLPKQYGGTCPLDLG-----ESEEEKDLRAYVASI 1771
            VP +++ GC  D VEA+RRW +T  WR  EK+D +L EPQPHF VIKQHYPHF+  RA +G  V+ E  G IDL AI +SG++ +   RHYVF+TEYLW I+ P  D+ + V+VLDV G+ L DLAG+ L FVK+++ ++Q++Y E +  + ++N PS+FS++W++++P++NE TQ KI I+N   A    AL E IP + +P +YGG   L+ G      +E EK L  +V  I
Sbjct:  130 VPRKFVDGCFQDMVEAKRRWAMTHRWRVKEKIDTILDEPQPHFKVIKQHYPHFMCGRAKSGNIVYYERLGEIDLGAIAASGITVDQCVRHYVFITEYLWRILSPG-DKDKTVSVLDVAGVRLSDLAGDVLDFVKKSSAVIQNNYPESAEAILLVNCPSWFSLLWKIVKPLVNEVTQKKIRIVNT--ANSLGALREFIPEDQIPAEYGGQ--LNCGGEARFHNELEKGLYDFVEKI 359          
BLAST of mRNA_H-paniculata_contig1291.1827.1 vs. uniprot
Match: A0A7S4ASX5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ASX5_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.630e-57
Identity = 109/266 (40.98%), Postives = 162/266 (60.90%), Query Frame = 2
Query: 1082 VPDRYLRGCRGDPVEAERRWRLTLEWRATEKVDEVLREPQPHFDVIKQHYPHFIHRRALNGCPVWVELPGRIDLPAIRSSGVSSESLKRHYVFVTEYLWGIVEPDFDRGQAVTVLDVEGLGLRDLAGEALGFVKQATTIVQDHYVERSNRMFIINAPSYFSMIWRVIRPMLNERTQAKIGIINADKAKISAALLECIPSENLPKQYGGTCPLDLGESEEEKDLRAYVASITPSLSGGDVIEEGDQVEVDLLKDFVVPGIGPRAKEG 1879
            +P R+LR  +GDP+E +RR+  TL+WR    +D +L EP PHF+ IK +YPH+ H R   G PV+ E P R +L A+RS+G+    L RHY+ VTE+ W  +EP+ D  +++TVLD+EG+G+ D  G+ + +VK  +   Q HY ER+  + ++N P +F+MIW+VI+PM+++ T  KI I+    A + AAL E IP EN+P +YGG+  + LGES EE  LR  V     +L+ GD    G   + D         +  +A  G
Sbjct:  119 LPLRFLRAAKGDPIEGQRRYEDTLQWRKEFSIDTILLEPHPHFETIKNNYPHYFHLRGRQGEPVFFEQPPRTNLEALRSAGIDILGLVRHYIMVTEFQWQYIEPN-DLARSITVLDLEGIGMMDFVGDCVEYVKMCSGYSQLHYPERAGHVLVVNVPRWFAMIWKVIKPMVDDATLEKISIVRGQGA-VYAALCEKIPPENIPPEYGGSS-IPLGESPEEYALRDLVR-YNNALAKGDFSCGGSAADRDTCSSSSESDVNEKAVHG 380          
BLAST of mRNA_H-paniculata_contig1291.1827.1 vs. uniprot
Match: W7TYG4_9STRA (Phosphoinositol transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYG4_9STRA)

HSP 1 Score: 216 bits (550), Expect = 7.990e-56
Identity = 113/262 (43.13%), Postives = 162/262 (61.83%), Query Frame = 2
Query: 1004 GEVAAIGSALGKNKGDEEDSGACEVKVPDRYLRGCRGDPVEAERRWRLTLEWRATEKVDEVLREPQPHFDVIKQHYPHFIHRRALNGCPVWVELPGRIDLPAIRSSGVSSESLKRHYVFVTEYLWGIVEPDFDRGQAVTVLDVEGLGLRDLAGEALGFVKQATTIVQDHYVERSNRMFIINAPSYFSMIWRVIRPMLNERTQAKIGIINADKAKISAALLECIPSENLPKQYGGTCPLDLG------ESEEEKDLRAYVASI 1771
            G V   GS +G+   DEE     E  +P R++ GC GD  EA RRW LT EWR     D +L EPQP+FD+IKQ YP +     +NG PV+ E  G++D P +R +G   + L RHYV VTE+ W  + PD +  + +TV  VEG+G+RDLAGEA  F++++  ++ +HY ERS  + I NAPS+F+++W++IRPM+NERTQ K+ I++  K +    L E IP EN+P +YGG      G      +S +E  LR +V ++
Sbjct:  347 GRVGTPGSVMGRGAADEE-----ERPLPQRFIDGCLGDMTEAMRRWNLTCEWRREYGTDGILDEPQPYFDLIKQCYPSWYCGEGINGDPVYWERSGQVDQPRMRVAGCGIDELLRHYVMVTEFCWVKLYPD-ETKKTITVFSVEGVGIRDLAGEAFDFLRRSIHLISEHYPERSAVIMITNAPSWFAVLWKIIRPMVNERTQKKVKIVS--KKETLECLKEFIPEENIPVEYGGKLRFGDGVDTARWKSPQEVALREHVLAV 600          
BLAST of mRNA_H-paniculata_contig1291.1827.1 vs. uniprot
Match: A0A7S1ZBV7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBV7_TRICV)

HSP 1 Score: 206 bits (523), Expect = 6.380e-55
Identity = 101/226 (44.69%), Postives = 151/226 (66.81%), Query Frame = 2
Query: 1076 VKVPDRYLRGCRGDPVEAERRWRLTLEWRATEKVDEVLREPQPHFDVIKQHYPHFIHRRALNGCPVWVELPGRIDLPAIRSSGVSSESLKRHYVFVTEYLWGIVEPDFDRGQAVTVLDVEGLGLRDLAGEALGFVKQATTIVQDHYVERSNRMFIINAPSYFSMIWRVIRPMLNERTQAKIGIINADKAKISAALLECIPSENLPKQYGGTCPLDLGESEEEKDLR 1753
            V VP R+L   +GDP+    R++ TL WR    +D +L EP  HFDVIK+++PHF H R     PV+ ELP +++LPA+R++GV+ + L RHY  VTE++W  VE   + G+++ ++D+EG+ L D AGE + FVK+A++    HY ER+  +F+IN PS+F +IW+VI+PML+  T+ KI I+   K +I  AL   IP EN+P +YGG   + LG+S EE+ L+
Sbjct:  104 VDVPTRFLLAAKGDPIAGNVRYQETLAWRNCHGIDNILFEPNHHFDVIKRNWPHFFHLRGYMNEPVYYELPPKMNLPAMRAAGVTLDILLRHYAMVTEFMWQYVERS-ESGKSIYIIDLEGMRLFDFAGEVIDFVKKASSFTSQHYPERAGTVFVINVPSFFHLIWKVIKPMLDPVTRQKIFILRG-KEEIHNALKSKIPIENIPPEYGGRS-MPLGQSPEERMLK 326          
BLAST of mRNA_H-paniculata_contig1291.1827.1 vs. uniprot
Match: A0A7S1D186_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D186_CYCTE)

HSP 1 Score: 206 bits (524), Expect = 1.790e-54
Identity = 103/224 (45.98%), Postives = 150/224 (66.96%), Query Frame = 2
Query: 1079 KVPDRYLRGCRGDPVEAERRWRLTLEWRATEKVDEVLREPQPHFDVIKQHYPHFIHRRALNGCPVWVELPGRIDLPAIRSSGVSSESLKRHYVFVTEYLWGIVEPDFDRGQAVTVLDVEGLGLRDLAGEALGFVKQATTIVQDHYVERSNRMFIINAPSYFSMIWRVIRPMLNERTQAKIGIINADKAKISAALLECIPSENLPKQYGGTCPLDLGESEEEKDL 1750
            ++P R+LR  +GDPVE  RR++ TLEWR    +D +L+EP PHF++IK+HYPHF H R  N  PV+ E P + +L A+R+ GV  + L RHY  +TE+ W  VE D D  +++TV+D+EG+   D AG+ + FV++A+     HY ER+  + +IN PS+F +IW V++PML+E T  KI I+  +K +I  A+LE IP EN+P +YGG   + LG S EE+ L
Sbjct:  151 ELPLRFLRAGKGDPVEGWRRYQQTLEWRKEIGMDTILKEPHPHFELIKRHYPHFHHLRGRNNEPVYYEKPPKTNLKALRAGGVDLQRLLRHYAMITEFGWQCVERD-DLARSITVIDLEGIRFTDFAGDCIDFVRKASAFTGAHYPERAGYVMVINVPSWFKVIWNVVKPMLDEVTLQKITILR-NKNEIFQAMLEKIPIENIPPEYGGKS-MPLGYSPEEQLL 371          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1291.1827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBN1_ECTSI3.430e-20740.68CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K979_9PHAE5.830e-16742.92CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S3Y7R1_HETAK4.190e-6933.68Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9D0V4_9STRA3.080e-6435.60CRAL-TRIO domain-containing protein n=1 Tax=Nannoc... [more]
I2CQU5_NANGC3.660e-5841.61Phosphoinositol transporter n=1 Tax=Nannochloropsi... [more]
A0A7S4DBX9_HETAK4.390e-5846.81Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4ASX5_9STRA1.630e-5740.98Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
W7TYG4_9STRA7.990e-5643.13Phosphoinositol transporter n=2 Tax=Monodopsidacea... [more]
A0A7S1ZBV7_TRICV6.380e-5544.69Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1D186_CYCTE1.790e-5445.98Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1291contigH-paniculata_contig1291:16359..22583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score657.9
Seed ortholog evalue8.5e-186
Seed eggNOG ortholog2880.D8LBN1
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size3795
Cds size3417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1291.1827.1prot_H-paniculata_contig1291.1827.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1291 16655..22501 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.4534733-UTR-H-paniculata_contig1291:16358..166541622929017.4534733-UTR-H-paniculata_contig1291:16358..16654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1291 16359..16654 -
1691480700.932893-UTR-H-paniculata_contig1291:16358..166541691480700.932893-UTR-H-paniculata_contig1291:16358..16654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1291 16359..16654 -
1622929017.555365-UTR-H-paniculata_contig1291:22501..225831622929017.555365-UTR-H-paniculata_contig1291:22501..22583Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1291 22502..22583 -
1691480700.9830272-UTR-H-paniculata_contig1291:22501..225831691480700.9830272-UTR-H-paniculata_contig1291:22501..22583Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1291 22502..22583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.4738429-CDS-H-paniculata_contig1291:16654..177821622929017.4738429-CDS-H-paniculata_contig1291:16654..17782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 16655..17782 -
1691480700.9425128-CDS-H-paniculata_contig1291:16654..177821691480700.9425128-CDS-H-paniculata_contig1291:16654..17782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 16655..17782 -
1622929017.4892519-CDS-H-paniculata_contig1291:18269..190681622929017.4892519-CDS-H-paniculata_contig1291:18269..19068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 18270..19068 -
1691480700.9503884-CDS-H-paniculata_contig1291:18269..190681691480700.9503884-CDS-H-paniculata_contig1291:18269..19068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 18270..19068 -
1622929017.506341-CDS-H-paniculata_contig1291:19736..198251622929017.506341-CDS-H-paniculata_contig1291:19736..19825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 19737..19825 -
1691480700.9575117-CDS-H-paniculata_contig1291:19736..198251691480700.9575117-CDS-H-paniculata_contig1291:19736..19825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 19737..19825 -
1622929017.5224636-CDS-H-paniculata_contig1291:20512..208121622929017.5224636-CDS-H-paniculata_contig1291:20512..20812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 20513..20812 -
1691480700.9648583-CDS-H-paniculata_contig1291:20512..208121691480700.9648583-CDS-H-paniculata_contig1291:20512..20812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 20513..20812 -
1622929017.5416908-CDS-H-paniculata_contig1291:21400..225011622929017.5416908-CDS-H-paniculata_contig1291:21400..22501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 21401..22501 -
1691480700.972971-CDS-H-paniculata_contig1291:21400..225011691480700.972971-CDS-H-paniculata_contig1291:21400..22501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 21401..22501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1291.1827.1

>prot_H-paniculata_contig1291.1827.1 ID=prot_H-paniculata_contig1291.1827.1|Name=mRNA_H-paniculata_contig1291.1827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1139bp
MRGVSQPLPRPPRISTLESLALTLRSTFYFLGALDAALYLSVLPAILREV
LHEGDENDSGERTFSPPSSSSVAMAVALLVGAYYAGRLVTLAAASQVVKF
GCCSGGNTANSSLRIAEMGATLCLSVATYLVSGMVVVVRHRSLWWLAALR
LLSGAVAAAHRVLALRDEHLSTSCSLADQMGKPEIERGYPAAVAGLVVGC
AVSGVLFTPGHARPALRLSLAATALHIPSFILLLLIWRQRRSSSRGREGA
GGGWSALANSDVGSGNLVEVEVELRGRSTATAADVERSTNHSENGICILQ
QAASVGGGEVAAIGSALGKNKGDEEDSGACEVKVPDRYLRGCRGDPVEAE
RRWRLTLEWRATEKVDEVLREPQPHFDVIKQHYPHFIHRRALNGCPVWVE
LPGRIDLPAIRSSGVSSESLKRHYVFVTEYLWGIVEPDFDRGQAVTVLDV
EGLGLRDLAGEALGFVKQATTIVQDHYVERSNRMFIINAPSYFSMIWRVI
RPMLNERTQAKIGIINADKAKISAALLECIPSENLPKQYGGTCPLDLGES
EEEKDLRAYVASITPSLSGGDVIEEGDQVEVDLLKDFVVPGIGPRAKEGG
EAVDSWQKSGVHLTANDSAVVQPSLGNIDDGRMVQGGNGSTFSGSGDGVG
VSMPAQQRSATRRVLKKVGGALGWAGDKLAWRRSTGPSVAHLGEENAFVY
DVDLQQWILKERNRTSANGARGRMEGSGADNSTGQVKPSRAPRGRGESMG
SNTSEEMTVLAIQAAHYSLNETVTMKLSPVPSAPLSMPETTGKAAAVANT
RYGSRRPRDTSNASTTEHNETTELHHGMGRHEDELVVSCPCVKPFVGRRR
CGLVTTTCDPSFVFICYAVSVAVRECLPVWALAGTEAGGLGVGPGDGLIA
SPPLIGLAIAAGILIAEAGRAVVSSTWCRARYFGDGEWQCSGQVAAVRGR
FVTVTILTLAHAIKQASVSGVAAMPFAVVWVAVVWVVAANQTVLRLCHEK
PGCSQPWGRPVHGVVAGHEEVHRCDGNTARDERMPPPRPSLLTVAPRRSF
LLGDVLASSGGPLLLALGLKSGWPWPFDASVWFPLCLCIDLWISFGAQWA
AKRHTGFLGGDDGEEGERALDLSERGRFSFSGRFSEVV*
back to top

mRNA from alignment at H-paniculata_contig1291:16359..22583-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1291.1827.1 ID=mRNA_H-paniculata_contig1291.1827.1|Name=mRNA_H-paniculata_contig1291.1827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6225bp|location=Sequence derived from alignment at H-paniculata_contig1291:16359..22583- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACGGAGAGTACAGCAGTGGAGCAGTGCTCCCTTGTATATATCACTGAC CTCCAGCCATATGGAAAAAATTAGTATCCACAATGAGAGGGGTGAGCCAA CCATTACCACGACCACCAAGAATTTCAACACTTGAGAGTCTGGCCCTAAC TCTCAGGTCAACCTTTTACTTTCTGGGCGCTCTGGATGCGGCGTTATACC TCTCTGTGCTTCCTGCAATTCTTCGGGAAGTATTACACGAAGGGGACGAA AATGATTCAGGAGAAAGAACTTTCTCCCCTCCTTCATCTTCTTCCGTGGC GATGGCAGTAGCGCTGCTTGTTGGGGCTTACTACGCAGGTCGCTTGGTGA CTCTGGCTGCCGCGTCCCAAGTCGTCAAGTTTGGATGCTGTTCTGGAGGG AATACAGCAAATTCGTCTCTTCGCATTGCAGAGATGGGAGCGACACTCTG CCTGTCGGTGGCGACATACTTGGTTAGTGGTATGGTAGTGGTGGTTCGTC ACCGAAGCCTTTGGTGGCTCGCAGCCTTACGGTTGCTATCGGGAGCAGTG GCAGCCGCCCATCGCGTTCTTGCGTTGCGCGACGAACACTTGTCAACATC ATGTTCGTTGGCGGACCAAATGGGGAAGCCAGAGATTGAGAGGGGTTATC CCGCTGCAGTGGCCGGCCTGGTCGTCGGCTGTGCCGTCTCGGGTGTGCTC TTTACACCGGGTCACGCTCGGCCCGCCCTTCGACTATCCCTGGCGGCGAC AGCCCTGCACATCCCATCGTTTATTCTTTTGCTCCTCATTTGGCGGCAGC GTCGCTCGTCCTCGCGGGGAAGAGAGGGAGCCGGCGGTGGCTGGAGTGCA CTCGCCAACTCGGACGTGGGCAGCGGAAATCTCGTCGAAGTCGAGGTGGA GTTAAGGGGGAGGTCGACCGCAACAGCAGCTGACGTAGAACGGAGTACTA ATCACAGCGAGAATGGGATATGTATTTTACAACAAGCTGCTTCGGTTGGC GGGGGAGAGGTGGCTGCTATTGGCAGTGCATTAGGGAAAAATAAGGGAGA TGAGGAGGACAGTGGGGCTTGTGAGGTTAAGGTCCCGGACCGATATTTGC GGGGATGTAGGGGAGACCCCGTGGAAGCGGAGCGGCGATGGCGGCTTACT CTGGAGTGGCGTGCGACAGAGAAAGTTGACGAGGTGATACGAATGCTTAT GCCCATTGTGTGACAGAACGATCGTGTACGGTGGTCTTATCGATGATACG GCGTGGTTTGCTGCTTTCCCATGGAAGGAGAGATTGAGATAAGGATGTTG TGGGACTTACTTGTACCGCGAGTCCCATCTATGCACTTGGCGTGGTCCTA GATGAGAATTGCGGAGATATTTTTTTGGGCCTGTCCTTGGACTGCTCTGC AGCTTATCCTGCATTTCGATTGACCTGCTAACCAAATACTCCGCAGTAGA TAGAGACGGTTGCGACAGCGTAGCGGGTTCTATCTTCTCGTGTGTCTTGC CGCCCGAAAATACGCGTTGATCTGTACCCCGCATTACGTCTCTGCGGTTT ATAGAAATGAAGCTAAGTTACACTCATATGACAGATGCATGAGTCGCGGG TCACGGCATGGGCATACCCGCCCCTGCTATGGGACAGCCAAGTTGGTCTT GCACTGTCCTTGCGTCAGGTAGCAGCAACTCTGCTCGGACTTGGTCGACC CACCCACACCACTCGTCATGGCTGTGTGTTTTGCGTAACGTTCCTTCGAT GCAAACCTCCACTAACCACAGGTACTACGGGAACCACAGCCGCACTTCGA TGTGATCAAGCAACACTACCCTCATTTCATCCATCGCCGTGCACTCAATG GTTGCCCTGTCTGGGTAGAACTCCCCGGGCGAATAGATTTGCCCGCGATT CGATCGAGCGGCGTATCTTCAGAGTCACTCAAACGTCATTATGTGTTTGT GACGGAGTACCTATGGGGTATAGTGGAACCAGACTTTGATCGCGGACAAG CGGTGACTGTCCTCGATGTTGAGGGATTGGGGCTGCGCGATCTTGCTGGA GAAGCGCTGGGTTTCGTGAAGGTACCCTCCTTATTGAAGGTTTTTGTGTT GAGTCATTTTTTGCTGGACTGACACGAGGGTTAAGTGAGAAATGTCTCTA TGGAAAGATTGGAGATCTTTCCGGTGACCTCGCTACCAGAGAAGTGATGG GGACTATGTTTTTCTCTGTGCACGGCCTTGCCTGTGGGAGCTTTCTATTC TCCGAACGCGGGCCTGAGCGATTGATATTCGAAACATTCATGTACCATTG CCAGTTTAGTTTACGGTAGAGAGACTTCTAATAGTGTGCGCTATTACCCA ACTCACTTAGGGCGTGATGAATGCCGTTTTTTGTTCTCTTAATGGGATGT TGGCAGACAGAAATATCTTGAAAACGTACTATTTTCATTATGTGCGTTAT CATTAAACGATTGATAAAATACCATACGCTGTTATCACGCATCGCGCATC ACACCTGTTGGCAATGCATCATTGTTTGCTAGCCACCTCTTGTGCAGCGG CGAGGAAAATACACCAAAACTTGTAGCAATACAGTCATATCAAGTAATTC GTCATATTCGAATCATGATAGAAAAAAATACAGGTGAGGACTCTGGTCCC TGGGACCTCTATCGAGGTTCTGACGAGTGGCTAGTAAGTACTGATGCAAA CTGTGCGAACTAATCACGAAGCCCTCTTGGTATCTCGTCTTCGCTTCGTT CGATGCAGCAAGCTACGACTATTGTCCAGGATCACTACGTTGAGAGGAGC AACCGCATGTTTATCATCAACGCGCCTTCCTACTTCAGCATGATATGGTA ACTGAAGCATGATTTCTTGCCTTTCTGCACGCCTGTTTTGGATTGCTGGG GTACTTGGGCGGGGCAGATCGTGTTGTGGGCGGCGGTTCCACCTCCTAAG TTAACGATGGATCTTAGCCTTTTGCCCTGCTGCACACTTGCGAATTACAA CTCCTGTAGGCTTCTGCAATACAATCGGCGTTCCTTGCGTTGAGCTCTGT ATTAGTGCTCAATTCAAATGCGATTTGTGCGGGCCTGCTATGCTTCAATG CTTCAATCCCCTATTGCGATGAAAACATGGAAGCATGTAAAGCGAAGTTG GTCGCTTTTTTAGAGGACAAGTACGCACTTGTGACAGTGGTGTACGGACG TGGTGCTGTATTCCCTGCCTACTCTAACGCTTTAATGTGTCACTGTCTTG TGTTCGTCGTGCCTCCCCCCCCGGCGGTCTCACAACATCTGCACAGTCCC AGCAGTGAACGAAAGACTCGTGTCGGCTATCTATTACGTGTACCTGTGAG ATGATAGTGTTCGCACACTGCGTTACCCACGTGTCGAATCCGCCCAGATA ATATCCTCCCGTGTCCCACTGGAGATATGAATCATACAGCTCGCATCAAC CACCCAAGAACCTAACAAAGAATGTCTCCTACTTCACCATCAAATAATCT TCTCGCCTGTACCAGGCGAGTTATTCGACCGATGTTGAACGAGCGGACAC AGGCCAAAATTGGCATCATTAATGCAGACAAAGCCAAGATCTCTGCCGCG CTCCTCGAGTGCATCCCTTCCGAAAACCTTCCCAAGCAGTATGGCGGGAC CTGTCCGCTCGACCTGGGAGAGAGTGAGGAAGAGAAGGACCTGCGCGCCT ACGTAGCTAGCATTACGCCGTCGCTTTCGGGTGGAGACGTTATTGAAGAA GGGGATCAAGTGGAAGTCGATCTTCTCAAAGACTTTGTTGTTCCAGGTAT TGGACCCCGCGCCAAGGAAGGGGGAGAGGCTGTGGATTCATGGCAAAAGT CAGGGGTACATCTGACAGCAAATGACTCGGCAGTCGTCCAACCGTCACTT GGGAACATAGACGATGGTCGAATGGTGCAGGGGGGAAATGGGAGTACCTT CAGCGGCAGCGGCGATGGTGTAGGTGTAAGCATGCCTGCACAGCAGAGGA GTGCCACTCGGCGCGTGCTGAAGAAAGTCGGCGGAGCGTTGGGGTGGGCC GGTGATAAACTGGCGTGGCGACGTTCGACTGGTCCATCCGTTGCGCATTT AGGAGAGGAGAATGCATTCGTGTATGACGTAGACTTGCAACAGTGGATCT TGAAGGAGAGAAATCGGACAAGTGCAAATGGAGCACGCGGTCGGATGGAA GGATCTGGCGCAGATAATTCAACAGGACAGGTGAAGCCCTCGAGAGCGCC GCGTGGTCGAGGGGAAAGTATGGGATCGAACACGTCCGAGGAGATGACGG TGTTGGCAATACAGGTGCGCACTGCGGTCTAAATACGTGTTTCTGGTGTA AAGCACCCATCCTGTGTCGGCATTCTGCTTCCTTGTTTTGTGTAATGGTG AAGGTTTTCGCTGTGATACCCGGTCTTGCTTATGGAGCGGAGCGGCGGAT GCTTGGAATAACTGTTACCGAAATCTGGACACCGTGTTGAATGTATCGTT GTCGACCAAAGTCAGTTAGTGGGTCAAAGATAAAGCAGACATGCCATAAC GGCAGGAGAATCGAAAAGTCTGATTATTCTACTCGCCATGCCGTACCATT TCTCCTCGAAACACCAACAGAACAAGAGTCACAAGCACAGGTTTCATACC CACTTATTGTCATTCGCATTTTCAATCGCTCCAATATTGCTGCCAATATT GCTGCCAACAGCATCGGACACATGCTAGGGAACTACATGACAACGCCACT ATCCGTCCCCTCTATCTCTTTCTCTCTCTCTCTTGGTTCTGTGTCATCTA GGCAGCGCATTATTCATTGAATGAAACGGTCACGATGAAATTGTCACCCG TACCGAGTGCTCCACTTTCCATGCCGGAGACAACCGGCAAGGCGGCCGCG GTTGCAAACACACGATACGGCTCTCGTCGACCAAGGGATACCTCAAACGC CAGCACAACAGAACACAACGAAACAACAGAACTTCATCACGGCATGGGAA GGCATGAGGACGAGCTTGTGGTTTCGTGCCCTTGCGTGAAGCCGTTCGTC GGGCGTCGTCGTTGTGGACTAGTGACGACTACGTGCGATCCCTCGTTTGT GTTCATCTGCTACGCTGTCAGCGTGGCCGTTCGAGAGTGTCTCCCCGTGT GGGCGCTCGCCGGAACTGAGGCAGGCGGACTCGGTGTTGGGCCGGGCGAT GGGCTTATCGCCTCACCACCGCTCATCGGGCTTGCCATCGCAGCTGGCAT TCTTATTGCAGAGGCCGGACGAGCAGTGGTGTCATCGACTTGGTGCCGCG CTCGATATTTCGGGGATGGGGAATGGCAATGTAGTGGCCAGGTTGCCGCT GTGCGTGGGCGGTTTGTGACGGTGACGATTCTGACATTGGCGCACGCGAT AAAGCAGGCGTCGGTTTCGGGGGTGGCTGCCATGCCCTTTGCGGTGGTGT GGGTCGCGGTGGTCTGGGTTGTTGCTGCGAACCAGACGGTGCTGCGGCTC TGCCACGAAAAACCGGGCTGTTCACAACCGTGGGGTCGTCCCGTCCATGG AGTTGTCGCAGGGCACGAGGAGGTACATCGTTGTGATGGCAACACCGCGA GGGATGAACGGATGCCACCGCCACGGCCATCATTGTTGACGGTAGCACCG CGGCGATCTTTTTTGTTAGGGGATGTTTTGGCCTCCTCCGGCGGACCGTT GTTGCTGGCTTTGGGACTAAAGAGCGGCTGGCCTTGGCCATTTGATGCGT CCGTTTGGTTTCCGTTATGCTTGTGCATAGACTTGTGGATTTCATTTGGA GCACAGTGGGCTGCGAAACGACATACTGGATTCCTAGGTGGGGACGATGG GGAAGAAGGAGAGCGCGCGTTGGACTTGAGCGAGCGAGGGCGCTTCTCTT TTTCGGGACGATTTTCTGAAGTTGTCTGACTACTAGGATAGCCTAATATG ACACGTCGAAATATATTACTTAACCGCTCTAAACAACATTTGGCTGAAAT TGAGGGGGGATGTTCAGGTTGAGAGTCAGCGTTTCGGAACTGTAAGAGCC TTTCTTCCCCTCCCCAAAATAACAGCTGTAAGCCCCACAGTGGGTGTGAG CAAGCGTGGATGATTCTTGATCTTTCTATCCGTCGCCATCGTCTCATCCC CGAGAGGACTGCTGCCGTGTGTCACTCGCCCATTCGGGGCAAACCCAATG GAAGTTATACACAATGCAAGGCCCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1291:16359..22583-

>mRNA_H-paniculata_contig1291.1827.1 ID=mRNA_H-paniculata_contig1291.1827.1|Name=mRNA_H-paniculata_contig1291.1827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6834bp|location=Sequence derived from alignment at H-paniculata_contig1291:16359..22583- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGGGGTGAGCCAACCATTACCACGACCACCAAGAATTTCAACACT
TGAGAGTCTGGCCCTAACTCTCAGGTCAACCTTTTACTTTCTGGGCGCTC
TGGATGCGGCGTTATACCTCTCTGTGCTTCCTGCAATTCTTCGGGAAGTA
TTACACGAAGGGGACGAAAATGATTCAGGAGAAAGAACTTTCTCCCCTCC
TTCATCTTCTTCCGTGGCGATGGCAGTAGCGCTGCTTGTTGGGGCTTACT
ACGCAGGTCGCTTGGTGACTCTGGCTGCCGCGTCCCAAGTCGTCAAGTTT
GGATGCTGTTCTGGAGGGAATACAGCAAATTCGTCTCTTCGCATTGCAGA
GATGGGAGCGACACTCTGCCTGTCGGTGGCGACATACTTGGTTAGTGGTA
TGGTAGTGGTGGTTCGTCACCGAAGCCTTTGGTGGCTCGCAGCCTTACGG
TTGCTATCGGGAGCAGTGGCAGCCGCCCATCGCGTTCTTGCGTTGCGCGA
CGAACACTTGTCAACATCATGTTCGTTGGCGGACCAAATGGGGAAGCCAG
AGATTGAGAGGGGTTATCCCGCTGCAGTGGCCGGCCTGGTCGTCGGCTGT
GCCGTCTCGGGTGTGCTCTTTACACCGGGTCACGCTCGGCCCGCCCTTCG
ACTATCCCTGGCGGCGACAGCCCTGCACATCCCATCGTTTATTCTTTTGC
TCCTCATTTGGCGGCAGCGTCGCTCGTCCTCGCGGGGAAGAGAGGGAGCC
GGCGGTGGCTGGAGTGCACTCGCCAACTCGGACGTGGGCAGCGGAAATCT
CGTCGAAGTCGAGGTGGAGTTAAGGGGGAGGTCGACCGCAACAGCAGCTG
ACGTAGAACGGAGTACTAATCACAGCGAGAATGGGATATGTATTTTACAA
CAAGCTGCTTCGGTTGGCGGGGGAGAGGTGGCTGCTATTGGCAGTGCATT
AGGGAAAAATAAGGGAGATGAGGAGGACAGTGGGGCTTGTGAGGTTAAGG
TCCCGGACCGATATTTGCGGGGATGTAGGGGAGACCCCGTGGAAGCGGAG
CGGCGATGGCGGCTTACTCTGGAGTGGCGTGCGACAGAGAAAGTTGACGA
GATGAGAGGGGTGAGCCAACCATTACCACGACCACCAAGAATTTCAACAC
TTGAGAGTCTGGCCCTAACTCTCAGGTCAACCTTTTACTTTCTGGGCGCT
CTGGATGCGGCGTTATACCTCTCTGTGCTTCCTGCAATTCTTCGGGAAGT
ATTACACGAAGGGGACGAAAATGATTCAGGAGAAAGAACTTTCTCCCCTC
CTTCATCTTCTTCCGTGGCGATGGCAGTAGCGCTGCTTGTTGGGGCTTAC
TACGCAGGTCGCTTGGTGACTCTGGCTGCCGCGTCCCAAGTCGTCAAGTT
TGGATGCTGTTCTGGAGGGAATACAGCAAATTCGTCTCTTCGCATTGCAG
AGATGGGAGCGACACTCTGCCTGTCGGTGGCGACATACTTGGTTAGTGGT
ATGGTAGTGGTGGTTCGTCACCGAAGCCTTTGGTGGCTCGCAGCCTTACG
GTTGCTATCGGGAGCAGTGGCAGCCGCCCATCGCGTTCTTGCGTTGCGCG
ACGAACACTTGTCAACATCATGTTCGTTGGCGGACCAAATGGGGAAGCCA
GAGATTGAGAGGGGTTATCCCGCTGCAGTGGCCGGCCTGGTCGTCGGCTG
TGCCGTCTCGGGTGTGCTCTTTACACCGGGTCACGCTCGGCCCGCCCTTC
GACTATCCCTGGCGGCGACAGCCCTGCACATCCCATCGTTTATTCTTTTG
CTCCTCATTTGGCGGCAGCGTCGCTCGTCCTCGCGGGGAAGAGAGGGAGC
CGGCGGTGGCTGGAGTGCACTCGCCAACTCGGACGTGGGCAGCGGAAATC
TCGTCGAAGTCGAGGTGGAGTTAAGGGGGAGGTCGACCGCAACAGCAGCT
GACGTAGAACGGAGTACTAATCACAGCGAGAATGGGATATGTATTTTACA
ACAAGCTGCTTCGGTTGGCGGGGGAGAGGTGGCTGCTATTGGCAGTGCAT
TAGGGAAAAATAAGGGAGATGAGGAGGACAGTGGGGCTTGTGAGGTTAAG
GTCCCGGACCGATATTTGCGGGGATGTAGGGGAGACCCCGTGGAAGCGGA
GCGGCGATGGCGGCTTACTCTGGAGTGGCGTGCGACAGAGAAAGTTGACG
AGGTACTACGGGAACCACAGCCGCACTTCGATGTGATCAAGCAACACTAC
CCTCATTTCATCCATCGCCGTGCACTCAATGGTTGCCCTGTCTGGGTAGA
ACTCCCCGGGCGAATAGATTTGCCCGCGATTCGATCGAGCGGCGTATCTT
CAGAGTCACTCAAACGTCATTATGTGTTTGTGACGGAGTACCTATGGGGT
ATAGTGGAACCAGACTTTGATCGCGGACAAGCGGTGACTGTCCTCGATGT
TGAGGGATTGGGGCTGCGCGATCTTGCTGGAGAAGCGCTGGGTTTCGTGA
AGGTACTACGGGAACCACAGCCGCACTTCGATGTGATCAAGCAACACTAC
CCTCATTTCATCCATCGCCGTGCACTCAATGGTTGCCCTGTCTGGGTAGA
ACTCCCCGGGCGAATAGATTTGCCCGCGATTCGATCGAGCGGCGTATCTT
CAGAGTCACTCAAACGTCATTATGTGTTTGTGACGGAGTACCTATGGGGT
ATAGTGGAACCAGACTTTGATCGCGGACAAGCGGTGACTGTCCTCGATGT
TGAGGGATTGGGGCTGCGCGATCTTGCTGGAGAAGCGCTGGGTTTCGTGA
AGCAAGCTACGACTATTGTCCAGGATCACTACGTTGAGAGGAGCAACCGC
ATGTTTATCATCAACGCGCCTTCCTACTTCAGCATGATATGCAAGCTACG
ACTATTGTCCAGGATCACTACGTTGAGAGGAGCAACCGCATGTTTATCAT
CAACGCGCCTTCCTACTTCAGCATGATATGGCGAGTTATTCGACCGATGT
TGAACGAGCGGACACAGGCCAAAATTGGCATCATTAATGCAGACAAAGCC
AAGATCTCTGCCGCGCTCCTCGAGTGCATCCCTTCCGAAAACCTTCCCAA
GCAGTATGGCGGGACCTGTCCGCTCGACCTGGGAGAGAGTGAGGAAGAGA
AGGACCTGCGCGCCTACGTAGCTAGCATTACGCCGTCGCTTTCGGGTGGA
GACGTTATTGAAGAAGGGGATCAAGTGGAAGTCGATCTTCTCAAAGACTT
TGTTGTTCCAGGTATTGGACCCCGCGCCAAGGAAGGGGGAGAGGCTGTGG
ATTCATGGCAAAAGTCAGGGGTACATCTGACAGCAAATGACTCGGCAGTC
GTCCAACCGTCACTTGGGAACATAGACGATGGTCGAATGGTGCAGGGGGG
AAATGGGAGTACCTTCAGCGGCAGCGGCGATGGTGTAGGTGTAAGCATGC
CTGCACAGCAGAGGAGTGCCACTCGGCGCGTGCTGAAGAAAGTCGGCGGA
GCGTTGGGGTGGGCCGGTGATAAACTGGCGTGGCGACGTTCGACTGGTCC
ATCCGTTGCGCATTTAGGAGAGGAGAATGCATTCGTGTATGACGTAGACT
TGCAACAGTGGATCTTGAAGGAGAGAAATCGGACAAGTGCAAATGGAGCA
CGCGGTCGGATGGAAGGATCTGGCGCAGATAATTCAACAGGACAGGTGAA
GCCCTCGAGAGCGCCGCGTGGTCGAGGGGAAAGTATGGGATCGAACACGT
CCGAGGAGATGACGGTGTTGGCAATACAGGCGAGTTATTCGACCGATGTT
GAACGAGCGGACACAGGCCAAAATTGGCATCATTAATGCAGACAAAGCCA
AGATCTCTGCCGCGCTCCTCGAGTGCATCCCTTCCGAAAACCTTCCCAAG
CAGTATGGCGGGACCTGTCCGCTCGACCTGGGAGAGAGTGAGGAAGAGAA
GGACCTGCGCGCCTACGTAGCTAGCATTACGCCGTCGCTTTCGGGTGGAG
ACGTTATTGAAGAAGGGGATCAAGTGGAAGTCGATCTTCTCAAAGACTTT
GTTGTTCCAGGTATTGGACCCCGCGCCAAGGAAGGGGGAGAGGCTGTGGA
TTCATGGCAAAAGTCAGGGGTACATCTGACAGCAAATGACTCGGCAGTCG
TCCAACCGTCACTTGGGAACATAGACGATGGTCGAATGGTGCAGGGGGGA
AATGGGAGTACCTTCAGCGGCAGCGGCGATGGTGTAGGTGTAAGCATGCC
TGCACAGCAGAGGAGTGCCACTCGGCGCGTGCTGAAGAAAGTCGGCGGAG
CGTTGGGGTGGGCCGGTGATAAACTGGCGTGGCGACGTTCGACTGGTCCA
TCCGTTGCGCATTTAGGAGAGGAGAATGCATTCGTGTATGACGTAGACTT
GCAACAGTGGATCTTGAAGGAGAGAAATCGGACAAGTGCAAATGGAGCAC
GCGGTCGGATGGAAGGATCTGGCGCAGATAATTCAACAGGACAGGTGAAG
CCCTCGAGAGCGCCGCGTGGTCGAGGGGAAAGTATGGGATCGAACACGTC
CGAGGAGATGACGGTGTTGGCAATACAGGCAGCGCATTATTCATTGAATG
AAACGGTCACGATGAAATTGTCACCCGTACCGAGTGCTCCACTTTCCATG
CCGGAGACAACCGGCAAGGCGGCCGCGGTTGCAAACACACGATACGGCTC
TCGTCGACCAAGGGATACCTCAAACGCCAGCACAACAGAACACAACGAAA
CAACAGAACTTCATCACGGCATGGGAAGGCATGAGGACGAGCTTGTGGTT
TCGTGCCCTTGCGTGAAGCCGTTCGTCGGGCGTCGTCGTTGTGGACTAGT
GACGACTACGTGCGATCCCTCGTTTGTGTTCATCTGCTACGCTGTCAGCG
TGGCCGTTCGAGAGTGTCTCCCCGTGTGGGCGCTCGCCGGAACTGAGGCA
GGCGGACTCGGTGTTGGGCCGGGCGATGGGCTTATCGCCTCACCACCGCT
CATCGGGCTTGCCATCGCAGCTGGCATTCTTATTGCAGAGGCCGGACGAG
CAGTGGTGTCATCGACTTGGTGCCGCGCTCGATATTTCGGGGATGGGGAA
TGGCAATGTAGTGGCCAGGTTGCCGCTGTGCGTGGGCGGTTTGTGACGGT
GACGATTCTGACATTGGCGCACGCGATAAAGCAGGCGTCGGTTTCGGGGG
TGGCTGCCATGCCCTTTGCGGTGGTGTGGGTCGCGGTGGTCTGGGTTGTT
GCTGCGAACCAGACGGTGCTGCGGCTCTGCCACGAAAAACCGGGCTGTTC
ACAACCGTGGGGTCGTCCCGTCCATGGAGTTGTCGCAGGGCACGAGGAGG
TACATCGTTGTGATGGCAACACCGCGAGGGATGAACGGATGCCACCGCCA
CGGCCATCATTGTTGACGGTAGCACCGCGGCGATCTTTTTTGTTAGGGGA
TGTTTTGGCCTCCTCCGGCGGACCGTTGTTGCTGGCTTTGGGACTAAAGA
GCGGCTGGCCTTGGCCATTTGATGCGTCCGTTTGGTTTCCGTTATGCTTG
TGCATAGACTTGTGGATTTCATTTGGAGCACAGTGGGCTGCGAAACGACA
TACTGGATTCCTAGGTGGGGACGATGGGGAAGAAGGAGAGCGCGCGTTGG
ACTTGAGCGAGCGAGGGCGCTTCTCTTTTTCGGGACGATTTTCTGAAGTT
GTCTGAGCAGCGCATTATTCATTGAATGAAACGGTCACGATGAAATTGTC
ACCCGTACCGAGTGCTCCACTTTCCATGCCGGAGACAACCGGCAAGGCGG
CCGCGGTTGCAAACACACGATACGGCTCTCGTCGACCAAGGGATACCTCA
AACGCCAGCACAACAGAACACAACGAAACAACAGAACTTCATCACGGCAT
GGGAAGGCATGAGGACGAGCTTGTGGTTTCGTGCCCTTGCGTGAAGCCGT
TCGTCGGGCGTCGTCGTTGTGGACTAGTGACGACTACGTGCGATCCCTCG
TTTGTGTTCATCTGCTACGCTGTCAGCGTGGCCGTTCGAGAGTGTCTCCC
CGTGTGGGCGCTCGCCGGAACTGAGGCAGGCGGACTCGGTGTTGGGCCGG
GCGATGGGCTTATCGCCTCACCACCGCTCATCGGGCTTGCCATCGCAGCT
GGCATTCTTATTGCAGAGGCCGGACGAGCAGTGGTGTCATCGACTTGGTG
CCGCGCTCGATATTTCGGGGATGGGGAATGGCAATGTAGTGGCCAGGTTG
CCGCTGTGCGTGGGCGGTTTGTGACGGTGACGATTCTGACATTGGCGCAC
GCGATAAAGCAGGCGTCGGTTTCGGGGGTGGCTGCCATGCCCTTTGCGGT
GGTGTGGGTCGCGGTGGTCTGGGTTGTTGCTGCGAACCAGACGGTGCTGC
GGCTCTGCCACGAAAAACCGGGCTGTTCACAACCGTGGGGTCGTCCCGTC
CATGGAGTTGTCGCAGGGCACGAGGAGGTACATCGTTGTGATGGCAACAC
CGCGAGGGATGAACGGATGCCACCGCCACGGCCATCATTGTTGACGGTAG
CACCGCGGCGATCTTTTTTGTTAGGGGATGTTTTGGCCTCCTCCGGCGGA
CCGTTGTTGCTGGCTTTGGGACTAAAGAGCGGCTGGCCTTGGCCATTTGA
TGCGTCCGTTTGGTTTCCGTTATGCTTGTGCATAGACTTGTGGATTTCAT
TTGGAGCACAGTGGGCTGCGAAACGACATACTGGATTCCTAGGTGGGGAC
GATGGGGAAGAAGGAGAGCGCGCGTTGGACTTGAGCGAGCGAGGGCGCTT
CTCTTTTTCGGGACGATTTTCTGAAGTTGTCTGA
back to top