mRNA_H-paniculata_contig1291.1825.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1291.1825.1
Unique NamemRNA_H-paniculata_contig1291.1825.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1291.1825.1 vs. uniprot
Match: D8LBP0_ECTSI (Expressed protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP0_ECTSI)

HSP 1 Score: 612 bits (1579), Expect = 2.250e-204
Identity = 316/423 (74.70%), Postives = 349/423 (82.51%), Query Frame = 3
Query: 1668 AKIDDSSGSAGGTAVGSNVKVVVIGGSGRVGGSTVRALRRLAGPGAEIVVGGRSKSNFLSSVKRWRTLASGTEDYDYSDIAFCELDLGDTGSLASALSGCDLVVHTAGPFQRKNTPEVLEAAIEAKVPYVDVCDDARLAVMAKGLHQKAQEAGVPATISAGIWPGVDQLMAVQACDMLGGPSEVASIDFSAYTAGTGNAGTTILSATFLILCEKVLGFKDGKQVFHEPASGFKKVDFGDSIGEKTVFRMN----------------------LIESFTCNQVLGIPNISTFFGTSPEPWNYLLKGMTRLPQSIMGNRDMMQAFAEFSEPLVRITDKLVGATNAMRMEAVAKDGRKAVVRYAHEDLEVCVGIATAAFAMATLRGDVPAGVWFPEEAFEDKSKRIRLFGEATRGAFMWESENDGS 2870
            AK DD  G+ G      + +V+V+GGSGRVGGSTVRALR+LAGPG E++VGGRS+ NF+ SV+RWRTL    E+YDYSD+ F ELDLGD  SLASAL GCDLVVHTAGPFQRK  PEVLEAAI AKVPYVDVCDDARLA +AK L++KAQEAGV ATISAGIWPG+DQLMAV+AC+MLGG SEV SIDFSAYTAGTGNAGTTILSATFLILCEKVLGFKDG ++FHEPASGFKKVDFG SIGEKT                           L+ SFTCNQVLGIPNIST+FGTSPEPWNYLLKGMT LP SIMGNRD+MQA AEFSEPLVRITDKLVGATNAMR+EAVAKDGRKAV+ YAHEDLEVCVGIATAAF +ATLRGDV  GVWFPEEAF+D++KR  LF +ATRGAFMWE +  G+
Sbjct:   52 AKGDDGGGARG---YDKHARVIVVGGSGRVGGSTVRALRQLAGPGLELLVGGRSQRNFVKSVERWRTLPGADEEYDYSDVKFVELDLGDAASLASALDGCDLVVHTAGPFQRKTRPEVLEAAIAAKVPYVDVCDDARLATVAKALNEKAQEAGVSATISAGIWPGIDQLMAVEACEMLGGASEVESIDFSAYTAGTGNAGTTILSATFLILCEKVLGFKDGNEIFHEPASGFKKVDFGQSIGEKTRGMCTPAAWLTSTSGRCRCERQGSAVVLVASFTCNQVLGIPNISTYFGTSPEPWNYLLKGMTLLPDSIMGNRDLMQALAEFSEPLVRITDKLVGATNAMRLEAVAKDGRKAVLNYAHEDLEVCVGIATAAFVVATLRGDVRPGVWFPEEAFDDEAKRGLLFDDATRGAFMWERQEQGA 471          
BLAST of mRNA_H-paniculata_contig1291.1825.1 vs. uniprot
Match: A0A4D9D814_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D814_9STRA)

HSP 1 Score: 377 bits (969), Expect = 1.730e-115
Identity = 201/381 (52.76%), Postives = 259/381 (67.98%), Query Frame = 3
Query: 1725 KVVVIGGSGRVGGSTVRALRRLAGPGAEIV-VGGRSKSNFLSSVKRWRTLASGTEDYD-YSDIAFCELDLGDTGSLASALSGC--DLVVHTAGPFQRKNTPEVLEAAIEAKVPYVDVCDDARLAVMAKGLHQKAQEAGVPATISAGIWPGVDQLMAVQACDMLGGPSEVASIDFSAYTAGTGNAGTTILSATFLILCEKVLGFKDGKQVFHEPASGFKKVDFGDSIGEKTVFRMNLIESFTCNQVLGIPNISTFFGTSPEPWNYLLKGMTRLPQSIMGNRDMMQAFAEFSEPLVRITDKLVGATNAMRMEAVAKDGRK-AVVRYAHEDLEVCVGIATAAFAMATLRGDVPAGVWFPEEAFEDKSKRIRLFGEATRGAFMWE 2852
            +V+VIG +GRVGGSTVRALRRL G    ++ VGGR+ + F  + +RW +L S     D + D+ F  +D  D   L +AL+    DL++HTAGPFQR+  PEVL+AA+  KVPYVDVCDD  LA +AKG   +A++  VP  IS G+WPG+  LMAV   + +GG      I+F  +T+G+G AGTTILSATFLIL EKVL + +G+  +++ AS F+K DFG  IG + VFRMNL+E+F+C++VLG+PN+STFFGT+P  WNYLLKGM  LP  I+ +R +MQA A  SEPLVR+ D LVG  NAMR+ A +K G + A   YAHEDLE CVG   AAFA   L G V  GVW+PEEAF     R  +F  AT+G   WE
Sbjct:   36 RVLVIGATGRVGGSTVRALRRLPGGTKNLISVGGRNAAKFKKAKERWMSLESKKNGVDTFDDVEFVPMDHEDRIGLLAALASHRPDLIIHTAGPFQRRTAPEVLKAALILKVPYVDVCDDIHLAQLAKGYDGEARKGNVPCLISTGVWPGISSLMAVDVAEAVGGIEATDKIEFEFFTSGSGGAGTTILSATFLILSEKVLAYVNGRPHYYDAASDFRKADFGKGIGLRQVFRMNLLEAFSCHRVLGVPNVSTFFGTAPNGWNYLLKGMAMLPAKILQDRALMQALAIVSEPLVRLVDTLVGTANAMRVTATSKRGTESATALYAHEDLETCVGEGIAAFAAQVLDGKVAPGVWYPEEAFASLEGRRDVFQLATKGCSTWE 416          
BLAST of mRNA_H-paniculata_contig1291.1825.1 vs. uniprot
Match: K8YW21_NANGC (RRM domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YW21_NANGC)

HSP 1 Score: 358 bits (919), Expect = 1.800e-105
Identity = 198/385 (51.43%), Postives = 254/385 (65.97%), Query Frame = 3
Query: 1725 KVVVIGGSGRVGGSTVRALRRLAGPGAEIV-VGGRSKSNFLSSVKRWRTLASGTEDYD-YSDIAFCELDLGDTGSLASALSGC--DLVVHTAGPFQRKNTPEVLEAAIEAKVPYVDVCDDARLAVMAKGLHQKAQEAGVPATISAGIWPGVDQLMAVQACDMLGGPSEVASIDFSAYTAGTGNAGTTILSATFLILCEKVLGFKDGKQVFHEPASGFKKVDFGDSIGEKTVFRMNLIESFTCNQVLGIPNISTFFGTSPEPWNYLLKGMTRLPQSIMGNRDMMQAFAEFSEPLVRITDKLVGATNAMRMEAVAKDGRK-AVVRYAHEDLEVCVGIATAAFAMATLRGDVPAGVWFPEEAFEDKSKRIRLFGEATRGAFMWESEND 2864
            +V+VIG +GRVGGSTVRALRRL G    ++ VGGR+ + F  + +RW +L S     D + D+ F  +D  D   L +AL+    DL++HTAGPFQR+  PEVL+AA+  KVPYVDVCDD  LA +AKG   +A++  VP  IS G+WPG+  LMAV   + +GG      I+F  +T+G+G AGTTILSATFLIL EKVL + +G+  +++ AS F+K DFG  IG + VFRMNL+E+F+C++VLG+PN+STFFGT+P  WNYLLKGM  LP  I+ +R +MQA A  SEPLVR+ D LVG  NAMR+ A +K G + A   YAHEDLE CVG   AAFA   L G V  G W      +D     RLF   TR      SEND
Sbjct:   16 RVLVIGATGRVGGSTVRALRRLPGGTKNLISVGGRNAAKFKKAKERWMSLESKKNGADTFDDVEFVPMDHEDRIGLLAALASHRPDLIIHTAGPFQRRMAPEVLKAALILKVPYVDVCDDIHLAQLAKGYDGEARKGNVPCLISTGVWPGISSLMAVDVAEAVGGIEATDKIEFEFFTSGSGGAGTTILSATFLILSEKVLAYVNGRPHYYDAASDFRKADFGKGIGLRQVFRMNLLEAFSCHRVLGVPNVSTFFGTAPNGWNYLLKGMAMLPAKILQDRALMQALAVVSEPLVRLVDTLVGTANAMRVTATSKGGTESATALYAHEDLETCVGEGIAAFAAQVLDGKVAPGAW------DDGGTDTRLFCGGTRLKSGKASEND 394          
BLAST of mRNA_H-paniculata_contig1291.1825.1 vs. uniprot
Match: A0A0G4EJV0_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJV0_VITBC)

HSP 1 Score: 332 bits (852), Expect = 2.540e-98
Identity = 197/433 (45.50%), Postives = 263/433 (60.74%), Query Frame = 3
Query: 1716 SNVKVVVIGGSGRVGGSTVRALRR-------LAGPGAEIVVGGRSKSNFLSSVKRWRT---LASGTEDYDYSD-------------------------------IAFCELDLGDTGSLASAL--SGCDLVVHTAGPFQRKNTPEVLEAAIEA--KVPYVDVCDDARLAVMAKGLHQKAQEAGVPATISAGIWPGVDQLMAVQACDMLGGPSEVASIDFSAYTAGTGNAGTTILSATFLILCEKVLGFKDGKQVFHEPASGFKKVDFGDSIGEKTVFRMNLIESFTCNQVLGIPNISTFFGTSPEPWNYLLKGMTRLPQSIMGNRDMMQAFAEFSEPLVRITDKLVGATNAMRMEAVAKDGRKAVVRYAHEDLEVCVGIATAAFAMATLRGD-------VPAGVWFPEEAFE-DKSKRIRLFGEATRGAFMWES 2855
            S  KV+VIGG+GRVGGS VRALR        LAG    IVVGGR +  FL + +R       A  TE  ++S                                + F E+D  D  S+A A+  + CDLVVHTAGPFQR     VLE  + +  K  YVDVCDD   A+MAK +H++A   GV A +S GIWPGV  LMA++A ++LGG  +V S +FS +TAG+G AG T++SATFLIL EK L ++ G+ V +   SG + VDFG+SIG + V+R+NL+E+ +C+ VLG+PN ST+F T+PE WN LL+  T LP  I+GNR++M +F++FS P++R  D  VGA NAMR++A  K+GR AV  Y H DLEVCVG A A+FA+  L          VP GVW PEE  + DK+ R R+   + R A+ ++S
Sbjct:   13 STAKVLVIGGTGRVGGSVVRALREMVPQEPPLAGMQPIIVVGGRDRGAFLQTRERLMEQDLAAMMTEGREFSGEGLFGSRGGGDEGGGGFVEGERVQLGGNRPTLKFFEVDATDPSSVAHAIESTSCDLVVHTAGPFQRSTRAAVLEGLLRSGHKCGYVDVCDDYSAAMMAKQMHEEAVSKGVTAILSGGIWPGVSNLMALEAAELLGGVDKVESTEFSFFTAGSGGAGATLISATFLILAEKALAYEKGEAVHYPAGSGIRSVDFGESIGSRKVYRINLLETESCHHVLGVPNTSTYFATAPEFWNDLLRLTTLLPSDILGNRELMYSFSDFSMPVIRAVDAFVGAANAMRVDARDKNGRHAVCLYGHSDLEVCVGEAVASFAIELLLQRITGGPPAVPPGVWLPEETCKNDKALRERIVRRSARTAYQYDS 445          
BLAST of mRNA_H-paniculata_contig1291.1825.1 vs. uniprot
Match: A0A7S2N2T9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N2T9_9STRA)

HSP 1 Score: 311 bits (797), Expect = 1.540e-91
Identity = 176/387 (45.48%), Postives = 243/387 (62.79%), Query Frame = 3
Query: 1719 NVKVVVIGGSGRVGGSTVRALRRLAGP---GAEIVVGGRSKSNFLSSVKRWRTLASGTEDYDYSDIAFCELDLGDTGSLASALSGCDLVVHTAGPFQRKNTPEVLEAAIEAKVPYVDVCDDARLAVMAKGLHQKAQEAGVPATISAGIWPGVDQLMAVQACDMLGG------PSEVASIDFSAYTAGTGNAGTTILSATFLILCEKVLGFKDGKQVFHEPASGFKKVDFGDSIGEKTVFRMNLIESFTCNQVLGIPNISTFFGTSPEPWNYLLKGMTRLPQSIMGNRDMMQAFAEFSEPLVRITDKLVGATNAMRMEAVAKDGRKAVVRYAHEDLEVCVGIATAAFAMATLRGDVPAGVWFPEEAFEDKSKRIRLFGEATRGAFMWE 2852
            ++  +V+GGSGRVGGSTVR LR LA        + VGGRS  ++  + KR   + +   D+   D+ +      D   + +A+ GC ++VHT GPFQ +  P +L   ++  VPYVDVCD+  LAV +K L  KA+E G+ A +S+GIWPGV  LMA +A   LG         +  S+DFS +TAGTGNAG TI+SATFL+L   V+ + +GK+   EP +  + VDFG +IG K V+ ++  +  T    LG+P +S+ FGT P  WNYL   M  +P+S++ NRD MQ FA FSEP++R+ DKLVGATNAMR++A A+DG    ++ AH DLE CVG+ATAAFA+  +RG VP GVWFP E  ++    I L   A   AF++E
Sbjct:   27 SLNALVVGGSGRVGGSTVRWLRTLADRENLDLTVSVGGRSVKSY-ETAKRKGVIPTQGVDFVPIDVDW------DDDKIMTAIDGCGIIVHTGGPFQGRTDPSLLRCCVKLGVPYVDVCDEWELAVESKKLQDKAKEEGIAAIVSSGIWPGVSALMAAEAVARLGRREGTDQQKKCESLDFSFFTAGTGNAGPTIVSATFLLLATPVITYLNGKKTEKEPWTEQRDVDFGPTIGNKPVWLLDNPDVPTTATTLGVPRVSSRFGTDPLFWNYLFGAMKAIPRSLLYNRDAMQGFALFSEPIIRLVDKLVGATNAMRVDATAQDGEVITMKIAHPDLEQCVGLATAAFAVEVMRGTVPPGVWFPAELPDEPRSNILL--TAKEDAFVYE 404          
BLAST of mRNA_H-paniculata_contig1291.1825.1 vs. uniprot
Match: A0A812YXR6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812YXR6_9DINO)

HSP 1 Score: 312 bits (799), Expect = 3.980e-91
Identity = 172/383 (44.91%), Postives = 236/383 (61.62%), Query Frame = 3
Query: 1722 VKVVVIGGSGRVGGSTVRALRRLAGPGA----EIVVGGRSKSNFLSSVKRWRTLASGTEDYDYSDIAFCELDLGDTGSLASALSG--CDLVVHTAGPFQRKNTPEVLEAAIEAKVPYVDVCDDARLAVMAKGLHQKAQEAGVPATISAGIWPGVDQLMAVQACDMLGGPSEVASIDFSAYTAGTGNAGTTILSATFLILCEKVLGFKDGKQVFHEPASGFKKVDFGDSIGEKTVFRMNLIESFTCNQVLGIPNISTFFGTSPEPWNYLLKGMTRLPQSIMGNRDMMQAFAEFSEPLVRITDKLVGATNAMRMEAVAKDGRKAVVRYAHEDLEVCVGIATAAFAMATLRGDVPAGVWFPEEAFEDKSKRIRLFGEATRGAFMWE 2852
            +++  +GG+GRVGGST R LR+LA        E+ V GRS+ N+    +RW     G          F E+D  +  S+   L+    DL+VHTAGPFQ    P +LE A+++  PYVDVCDD  L   AK L  + +EA VPA +SAGIWPGV  LM  +A + LGG +E   ++   YTAGTG AG TI+SATFL+L E  L FKDG++V  EP    + VDFG ++G + V  ++  E +TC++ LGIPNI++ FGT+P+ WN +   +  LP+S++GNR +MQ  A FS P++   D+LVGATNAMR++A ++ G    +R  H DLE CVG+ATAAF +  L+G VP G WFP E     + R R+F     G+  WE
Sbjct:   85 LRMSAVGGTGRVGGSTARWLRKLAEEEKLEDFELAVAGRSRENYAQFAQRWPGEECGAAPQ------FVEIDHTNRDSIREVLNARDWDLLVHTAGPFQGIQRPLLLEEALKSGTPYVDVCDDTELCKTAKELCPELEEAKVPAVVSAGIWPGVSALMVCEAVERLGGSAE--DVEMCFYTAGTGGAGPTIVSATFLLLAEPPLNFKDGREVRAEPWGNRRLVDFGRNVGRQHVHLLDEPEVYTCHRCLGIPNITSSFGTAPDVWNLMFGAVRILPKSVLGNRGLMQGVANFSMPIISAVDRLVGATNAMRVDARSETGEAVTLRITHSDLEDCVGLATAAFGLEVLQGQVPPGAWFPAEM---AANRARIFQRVRHGSINWE 456          
BLAST of mRNA_H-paniculata_contig1291.1825.1 vs. uniprot
Match: A0A7S4KE86_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KE86_9STRA)

HSP 1 Score: 308 bits (789), Expect = 2.650e-90
Identity = 178/373 (47.72%), Postives = 240/373 (64.34%), Query Frame = 3
Query: 1722 VKVVVIGGSGRVGGSTVRALRRLA--GPGAEIVV--GGRSKSNFLSSVKRWRTLASGTEDYDYSDIAFCELDL-GDTGSLASALSGCDLVVHTAGPFQRKNTPEVLEAAIEAKVPYVDVCDDARLAVMAKGLHQKAQEAGVPATISAGIWPGVDQLMAVQACDMLGGPS--EVASIDFSAYTAGTGNAGTTILSATFLILCEKVLGFKDGKQVFHEPASGFKKVDFGDSIGEKTVFRMNLIESFTCNQVLGIPNISTFFGTSPEPWNYLLKGMTRLPQSIMGNRDMMQAFAEFSEPLVRITDKLVGATNAMRMEAVAKDGRKAVV-RYAHEDLEVCVGIATAAFAMATLRGDVPAGVWFPEEAFEDKSKRIRL 2816
            + V+V+GGSGRVGGSTVR LR+ A   P  ++ V  G R+++++    KR   + S       S +AF  +DL G   +L+ A+ GC LVVHTAGPFQ +  P +L   +E  +PYVDVCD+  LAV +K L  +A++AGV A +S+GIWPGV  LMA +A   L   +  E  ++DFS +TAGTGNAG TI+SATFL+L    L F  G+ +  EP +  + VDFG  +G K ++ ++  +  T    LG+PN S+ FGT P PWNYL   M  +P+S++ NRD MQAFA FSEP++R+ DKLVGATNAMR++A   DG+  V  R  H DLE CVG+ATAAFA+  L+G V  G+WFP E  E+    I L
Sbjct:   35 LNVLVVGGSGRVGGSTVRWLRKYAERDPALDLTVSVGCRTEASY-DKAKRAGVVPS-------SGVAFVPVDLDGGDEALSDAIEGCGLVVHTAGPFQGRKDPSLLRCCVEKGIPYVDVCDEYELAVASKDLMDQAKKAGVAAVVSSGIWPGVSALMAAEAKSQLEDQTGEECDTLDFSFFTAGTGNAGPTIVSATFLLLATPALTFFRGEPLEKEPWTERRDVDFGPGVGTKPIWLLDNPDVPTTATSLGVPNASSRFGTDPLPWNYLFGAMKAIPRSLLYNRDAMQAFALFSEPIIRLVDKLVGATNAMRVDAKTADGKHVVTSRIVHPDLEACVGLATAAFAIEVLKGTVNPGIWFPAELPEEARTNILL 399          
BLAST of mRNA_H-paniculata_contig1291.1825.1 vs. uniprot
Match: A0A7S2LF05_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LF05_9STRA)

HSP 1 Score: 294 bits (752), Expect = 2.740e-85
Identity = 178/385 (46.23%), Postives = 236/385 (61.30%), Query Frame = 3
Query: 1722 VKVVVIGGSGRVGGSTVRALRRLAGPGAE---IVVGGRSKSNFLSSVKRWRTLASGTEDYDYSDIAFCELDLGDT-----GSLASALSGCDLVVHTAGPFQRKNTPEVLEAAIEAKVPYVDVCDDARLAVMAKGLHQKAQEAGVPATISAGIWPGVDQLMAVQACDML-------GGPSEVASIDFSAYTAGTGNAGTTILSATFLILCEKVLGFKDGKQVFHEPASGFKKVDFGDSIGEKTVFRMNLIESFTCNQVLGI----PNISTFFGTSPEPWNYLLKGMTRLPQSIMGNRDMMQAFAEFSEPLVRITDKLVGATNAMRMEAVAKDGRKAVVRYAHEDLEVCVGIATAAFAMATLRGD---VPAGVWFPEEAFEDKSKRI 2810
            + V+V+GGSGRVGGSTVR L+ L+        I VGGR   ++ ++++  + + S   D+   DI   E  L  T      S + +  GC +VVHT GPFQ + +P +L + IE  +PY DVCD+  LA  +K L QKA+ AGVPA +S GIWPGV  LMA +  D L       G   E+ SID+S +TAGTGNAG TI+SATFL+L   V+ F +G +   EP +  ++VDFG+ IG K V+ ++  +  T    L      PN S+ FGT P PWNYL   M  LP+S++ NRD MQ FA FSEP++R+ DKLVGATNAMR +  A +G K  +R AH DLE CVG+ATAAFA+  ++ D   VP GVWFP E   +  K I
Sbjct:   10 LNVLVVGGSGRVGGSTVRWLKTLSDREQNPISITVGGRRSESYQAALRN-KVIPSQGVDFVSLDIDGDESVLKQTLEQWKNSCSPSDDGC-MVVHTGGPFQGRTSPVLLRSCIELAMPYADVCDEFDLAETSKELDQKAKAAGVPAIVSCGIWPGVSALMAAEGVDQLKKKGESSGEKVEIESIDYSFFTAGTGNAGPTIVSATFLLLATPVITFMNGIRQDKEPWTEMREVDFGNGIGNKPVWLLDNPDVPTTAMYLNPNEKPPNCSSRFGTDPLPWNYLFGAMKALPRSLLYNRDAMQNFALFSEPIIRLVDKLVGATNAMRCDVTASNGDKVTLRIAHSDLEQCVGLATAAFALEMVKKDKQTVPPGVWFPSELGNEARKNI 392          
BLAST of mRNA_H-paniculata_contig1291.1825.1 vs. uniprot
Match: A0A8J2WIJ3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WIJ3_9STRA)

HSP 1 Score: 291 bits (746), Expect = 1.060e-84
Identity = 168/379 (44.33%), Postives = 228/379 (60.16%), Query Frame = 3
Query: 1725 KVVVIGGSGRVGGSTVRALRRLAGPG---AEIVVGGRSKSNFLSSVKRWRTLASGTEDYDYSDIAFCELDLGDTGSLASALSGCDLVVHTAGPFQRKNTPEVLEAAIEAKVPYVDVCDDARLAVMAKGLHQKAQEAGVPATISAGIWPGVDQLMAVQACDMLGGPSEVASIDFSAYTAGTGNAGTTILSATFLILCEKVLGFKDGKQVFHEPASGFKKVDFGDSIGEKTVFRMNLIESFTCNQVLGIPNISTFFGTSPEPWNYLLKGMTRLPQSIMGNRDMMQAFAEFSEPLVRITDKLVGATNAMRMEAVAKDGRKAVVRYAHEDLEVCVGIATAAFAMATLRGDVPAGVWFPEEAFEDKSKRIRLFGEATRGAFMWE 2852
            +V+V+GGSGRVG STVR + RL        E+ +GGR +++F ++ KR      G +  D  DI F  LDL D  SL  A++G  LVVHTAGPFQ++  P +L+A I+A VPY DVCD+  L+  AK L        VPA IS GIWPG   L+A +A + LG P +   ++FS +T+GTG AG TI+SATFL+LC     + DG  +  EP +G +  DFG  +G + V+ ++  +  TC + LG  + S+ FGT+P  WN L   M  LP+S++ +R  MQ  A+FS P++R  D LVG  NAMR++A A DG    +R AH DLE CVG ATAAF M  LRG +  G W+P E     + R R+      GA +WE
Sbjct:   24 RVLVVGGSGRVGASTVRWINRLGKAEQLPVELAIGGRRRASFDAAAKRL-----GAKGVD--DIKFVRLDLDDAASLERAVAGRSLVVHTAGPFQQRTDPTLLKACIDAGVPYCDVCDELELSRAAKKLTSD-----VPAVISCGIWPGASALLAARAAERLGKPLD--DLEFSFFTSGTGGAGPTIVSATFLLLCTPAAVYADGAVIEREPWTGKRTTDFGPGVGARDVYLLDNPDVPTCAEALGARSASSSFGTAPAFWNDLFGAMKLLPRSLLADRGAMQNLADFSMPIIRTVDALVGGINAMRVDAKAADGEAVTLRVAHGDLEDCVGQATAAFGMELLRGGIAPGCWYPAEL--PVAARDRILAVVEEGAIVWE 386          
BLAST of mRNA_H-paniculata_contig1291.1825.1 vs. uniprot
Match: A0A163YDL2_9SYNE (Putative trans-acting enoyl reductasec n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A163YDL2_9SYNE)

HSP 1 Score: 287 bits (735), Expect = 4.360e-83
Identity = 174/400 (43.50%), Postives = 231/400 (57.75%), Query Frame = 3
Query: 1716 SNVKVVVIGGSGRVGGSTVRALRRLAGPGAE-----IVVGGRSKSNFLSSVKRWRTLASGTEDYDYSDIAFCELDL-GDTGSLASALSGCDLVVHTAGPFQRKNTPEVLEAAIEAKVPYVDVCDDARLAVMAKGLHQKAQEAGVPATISAGIWPGVDQLMAVQACDMLGGPSEVASIDFSAYTAGTGNAGTTILSATFLILCEKVLGFKDGKQVFHEPASGFKKVDFGDSIGEKTVFRMNLIESFTCNQVLGIPNISTFFGTSPEPWNYLLKGMTRLPQSIMGNRDMMQAFAEFSEPLVRITDKLVGATNAMRMEAVAKDG------RKAVVRYAHEDLEVCVGIATAAFAMATLRG---------DVPAGVWFPEEAFEDKSKRIRLFGEATRGAFMWE 2852
            S V V+V+GG+GRVG STVR L RL+   AE     + +GGRS++NF++  KR           D  ++ F  +DL     SL + + G  LVVHTAGPFQ +  P++L A I A VPY DVCD+  L+  AK L   A  AGVPA +S GIWPGV  LMA +A   LGGP     ++FS +TAGTG AG TI+SATFL+L  +VL + +G   F EP +  + VDFG  +G    F ++  +  +  + L + N ++ FGT+P  WN L   M  LP  ++ NR  MQ  A FS P++R+ DKLVGATNAMR++AV+K         K  +R  H DLE CVG ATAAFA+  LRG          +PAGVW+P E       R  +    +  A +WE
Sbjct:    6 STVDVLVVGGNGRVGASTVRWLNRLSRRDAECTPLRLAIGGRSRANFVAVRKR----------LDLPELVFRPVDLEAGLESLVAVVRGVKLVVHTAGPFQGRTQPDLLRACINAGVPYCDVCDEFSLSRHAKDLSGDAVAAGVPAVVSCGIWPGVSALMAAEAVQKLGGPEVCERVEFSFFTAGTGGAGPTIVSATFLLLASRVLNYVNGWLTFKEPWTERRVVDFGAGVGSHACFLLDNPDVPSTVEALAVANCASRFGTAPGIWNSLFAAMKLLPSDLLVNRAAMQGLALFSMPIIRVVDKLVGATNAMRVDAVSKGNCDSGLPAKVTLRCVHADLEDCVGQATAAFAIEMLRGRPGLSSAEQTIPAGVWYPAEL--QAKARNNILQVVSEKALLWE 393          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1291.1825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBP0_ECTSI2.250e-20474.70Expressed protein n=1 Tax=Ectocarpus siliculosus T... [more]
A0A4D9D814_9STRA1.730e-11552.76Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
K8YW21_NANGC1.800e-10551.43RRM domain-containing protein (Fragment) n=1 Tax=N... [more]
A0A0G4EJV0_VITBC2.540e-9845.50Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2N2T9_9STRA1.540e-9145.48Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A812YXR6_9DINO3.980e-9144.91Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A7S4KE86_9STRA2.650e-9047.72Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2LF05_9STRA2.740e-8546.23Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A8J2WIJ3_9STRA1.060e-8444.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A163YDL2_9SYNE4.360e-8343.50Putative trans-acting enoyl reductasec n=3 Tax=unc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1291contigH-paniculata_contig1291:1441..9153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score429.5
Seed ortholog evalue1.2e-117
Seed eggNOG ortholog2880.D8LBP0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Saccharopine dehydrogenase NADP binding domain
EggNOG OGs2QQSS@2759,COG1748@1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size3931
Cds size804
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.0698917-UTR-H-paniculata_contig1291:1440..24801622929017.0698917-UTR-H-paniculata_contig1291:1440..2480Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1291 1441..2480 -
1691480700.7521238-UTR-H-paniculata_contig1291:1440..24801691480700.7521238-UTR-H-paniculata_contig1291:1440..2480Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1291 1441..2480 -
1622929017.1769645-UTR-H-paniculata_contig1291:6211..62531622929017.1769645-UTR-H-paniculata_contig1291:6211..6253Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1291 6212..6253 -
1691480700.8233807-UTR-H-paniculata_contig1291:6211..62531691480700.8233807-UTR-H-paniculata_contig1291:6211..6253Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1291 6212..6253 -
1622929017.197131-UTR-H-paniculata_contig1291:6842..70311622929017.197131-UTR-H-paniculata_contig1291:6842..7031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1291 6843..7031 -
1691480700.8331563-UTR-H-paniculata_contig1291:6842..70311691480700.8331563-UTR-H-paniculata_contig1291:6842..7031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1291 6843..7031 -
1622929017.2124498-UTR-H-paniculata_contig1291:7297..91531622929017.2124498-UTR-H-paniculata_contig1291:7297..9153Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1291 7298..9153 -
1691480700.8430223-UTR-H-paniculata_contig1291:7297..91531691480700.8430223-UTR-H-paniculata_contig1291:7297..9153Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1291 7298..9153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.082969-CDS-H-paniculata_contig1291:2480..26181622929017.082969-CDS-H-paniculata_contig1291:2480..2618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 2481..2618 -
1691480700.7607286-CDS-H-paniculata_contig1291:2480..26181691480700.7607286-CDS-H-paniculata_contig1291:2480..2618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 2481..2618 -
1622929017.094524-CDS-H-paniculata_contig1291:3000..31411622929017.094524-CDS-H-paniculata_contig1291:3000..3141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 3001..3141 -
1691480700.7678943-CDS-H-paniculata_contig1291:3000..31411691480700.7678943-CDS-H-paniculata_contig1291:3000..3141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 3001..3141 -
1622929017.1048346-CDS-H-paniculata_contig1291:3706..38481622929017.1048346-CDS-H-paniculata_contig1291:3706..3848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 3707..3848 -
1691480700.7751024-CDS-H-paniculata_contig1291:3706..38481691480700.7751024-CDS-H-paniculata_contig1291:3706..3848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 3707..3848 -
1622929017.1147256-CDS-H-paniculata_contig1291:4648..47161622929017.1147256-CDS-H-paniculata_contig1291:4648..4716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 4649..4716 -
1691480700.7823615-CDS-H-paniculata_contig1291:4648..47161691480700.7823615-CDS-H-paniculata_contig1291:4648..4716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 4649..4716 -
1622929017.1242633-CDS-H-paniculata_contig1291:5125..52391622929017.1242633-CDS-H-paniculata_contig1291:5125..5239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 5126..5239 -
1691480700.7898364-CDS-H-paniculata_contig1291:5125..52391691480700.7898364-CDS-H-paniculata_contig1291:5125..5239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 5126..5239 -
1622929017.1365156-CDS-H-paniculata_contig1291:5816..59181622929017.1365156-CDS-H-paniculata_contig1291:5816..5918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 5817..5918 -
1691480700.8040578-CDS-H-paniculata_contig1291:5816..59181691480700.8040578-CDS-H-paniculata_contig1291:5816..5918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 5817..5918 -
1622929017.1518176-CDS-H-paniculata_contig1291:6112..62111622929017.1518176-CDS-H-paniculata_contig1291:6112..6211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 6113..6211 -
1691480700.813518-CDS-H-paniculata_contig1291:6112..62111691480700.813518-CDS-H-paniculata_contig1291:6112..6211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1291 6113..6211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1291.1825.1prot_H-paniculata_contig1291.1825.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1291 2481..6211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1291.1825.1

>prot_H-paniculata_contig1291.1825.1 ID=prot_H-paniculata_contig1291.1825.1|Name=mRNA_H-paniculata_contig1291.1825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=268bp
MAKGLHQKAQEAGVPATISAGIWPGVDQLMAVQACDMLGGPSEVASIDFS
AYTAGTGNAGTTILSATFLILCEKVLGFKDGKQVFHEPASGFKKVDFGDS
IGEKTVFRMNLIESFTCNQVLGIPNISTFFGTSPEPWNYLLKGMTRLPQS
IMGNRDMMQAFAEFSEPLVRITDKLVGATNAMRMEAVAKDGRKAVVRYAH
EDLEVCVGIATAAFAMATLRGDVPAGVWFPEEAFEDKSKRIRLFGEATRG
AFMWESENDGSIKAGVV*
back to top

mRNA from alignment at H-paniculata_contig1291:1441..9153-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1291.1825.1 ID=mRNA_H-paniculata_contig1291.1825.1|Name=mRNA_H-paniculata_contig1291.1825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7713bp|location=Sequence derived from alignment at H-paniculata_contig1291:1441..9153- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAGTTGCTCTGCCAAGGTAGCTTATCCAAGGTGAGTCTGATCATCCTC GACTGATTGTAGAGCATGTTGAAGACATTCAATCACCGTCTGACACAGCG CAATTCTAACGTTTTCCCGGTGTGTTGTAGCCGAGGTTTCGGGAGTGTAA CCGGCGTCAGCACTGTGGTTCACAAAGGGAAACATACGTCATAGTTCTTC GGATAGTTCGGCCTGGGGTCATGTCTATGTATCACGGCACCGAAAGACAA AATTTGAATCATTGCTCATTGTTGCCGAAACACGAAAACTTACTTGATTC AGTTCCGAAAATCGTTATGAGGTTCAAACGCGACCACAACGAATCAGCGC GAGATGTCTATGTGTCGGATGCATTGAGATTGAATTCACGACGATTACAA AATGGTTGAGTTGGGTAGGTTGCAAGAGCACCTGTTCTCCTTCATTTCCG GACGGATGCTACCCAAATCAAGCACGTGTTATTCAGTTGATCAAGAACTA CGATCCAAACTACGTTTTGTTATACTGGGAGAGTGACGGTCACGATCAAT GCACTGTTTGTGCTGTATTCCTCTTTGACAATGACGTTCAAATCCCCGCT TTTAGCCGCTTGGCCGATACGTATGTACGCACGGACCACAGTTTTGTCTT GGTCGCCATGCCTCATGTCTTCCAACACAGTCAGTTTTATTTTTGTGCCC ACAGCGGCCGCCTTGTTTTGTCTAAATGTTTTGTCATTGGTCAGGACGTG TGAAAAAACGAGGCGGAATAGTGTTGCGCAAAAAAAGAGATTGCTTCTTG ATTGGTAAAAATATGTTTTGATTGGTCACAGAGCGATGCTGTCTTGTTCC CGCTTGCTTATTTTTTTCATACATACATTCTCTATACGTTGACTGTGGAT TGAGGACTTTTTTTGTTGATAGCGGAGATAACTCACTTTTTCGTGCCTCG ATAAGACATGACCTATGCGGGGCAACAAAATGCGACATGCTTTACATACT CACCTAGCCAAGTCAAATCTACTCCAACACATGGTGCCCGTGACGTAAAT TAAAAAGCTATAGACCAATTGGCGCTTCAGTCATCCCTTTTACTCTCGTA CATGGCGCGATATCTATTTGGTATTGTAAGTGTTGCACTCCCCGGACAAA TACAAATGATTGGCGTATTCGCCACGAAAATTAGAAAGTATTCCCCTGAG TTTCACAATGAGCGACCACGTAGAACAAAGTACTCACCCCTGTCCATTCG ATTTATGAGTATTATTAACAGTCGTGGATGGACCGGGGCACATAGAACAC ACGAGTTCCTGCTGAAACTCAGGCGAATACTGCTCAATTTTCGTGGCAAA TACACCAATTGTTCGAATTTGTCCGGTGGGTAAAGTGTTGAAACTGTTTG TTTCTGCACTGCTTCAGCCAACGGCAGGAAAAGCCCGTCATTTTTGTGCA AAACTACACGAGTAAATTGGTCAAGAAGATTTGTGATGGCCATATCAACA CAAAATTACGCTACGCTACTTGTACATTTAAGTTTAAGGACTACAGGGCA CGGTATGTGTACTGATTATTTCGTCCCTTGATGGGACTGCCTTGTTCATA ACCTTTGCAACATGCCAGCGGATTGCGCCATGTACGCCCTCGTAAACCGC TGGCATTGAACGCAGCTGCAAAGATCGATGACAGCAGCGGCTCTGCCGGA GGCACTGCTGTCGGTAGCAATGTTAAGGTTGTCGTGATCGGGGGCTCAGG TCGTGTCGGGGGTAGCACCGTCCGAGCGCTTCGTCGGCTGGCAGGACCTG GTGCCGAAATCGTCGTTGGGGGGCGAAGCAAAAGTAATTTTCTGTCTAGC GTGAAGGTGAGAGCAACAATGTGCTGTCCTTGCTTCTACTGCAGCTTGCT GGAGGTTTTGATGCCCCTGCACGAATCACAGTACCGTTGCATTGCGCGTC AAGCTCTGGCGGTTGTGTTTGCTACAATGGTTGTTTGACCGTCGATCGAA GAACTCCCCGACTATGTTACCACCTACTTGACAGTTTTTTTTCCTGCCAC TTTTGCTTTGTGCGCCACAACAAACATGGGCAAAAAACAACAAAACAAAC TATGAATGCGCCGACTGCCAAGCGCTGGCGTACACTTGCAAGTGGGACTG AAGACTATGACTACTCCGACATCGCTTTTTGCGAGCTCGACCTCGGCGAC ACGGGGTCGCTAGCCAGTGCCCTCTCTGGTTGCGATCTGGTCGTACACAC AGCGGGGCCTTTTCAACGCAAAAACACCCCGGAGGTGCTCGAAGCCGCTA TTGAGGCCAAGGTGAGAACAACACCAATTCGAAACCCCAGTACACATTTT TCGGTATCGGTGTTTCTTTCAGTTGTATATTGTAGGATCGACACGTATTG GAAAGCGCGGGCTGGTTCTGGGTTCAATCCTTCAGTAGTACTCTATAACC AACCTACAGTGTGACGACTGTCTCCAGAGGCCCCCGACACGCCCCAGATG GCGCCCTCAAACTCTTGCACCTAGTGTTTGTGCATGGGGTTGCGTTTTCT GCCCGGATGCCCGTGAGGGTTACAGACTTGTGCCTGAGGTAGAGTACGCC TACTACTGTGCGCCTGTGAAATGCTGATCGAGAGCGGATCGTGCGAACAG GGTTCATGTTTCGCGTAAGAGTACCGATCGTCGGTGTGTTAAGATTCCTT TTTTTGTGTTAAAACATCATGAGAAAAATCGCTATTTATCCGCAGGTGCC GTCAGGTCTGGTTCGATTACGTTGTGAGGGGGGGTGAAACGCTTCCAATC AAACCGCGTGCTAGCAGGATTGGTGGTGCGCAAACTAGTAGTCATATTTG AACGCACCGCCACCCGCTTGCCTCTGTCGTTGCTGTCACGTAAAACATAG GTGCCATACGTTGACGTGTGCGACGACGCGCGACTAGCTGTGATGGCCAA AGGGTTGCACCAAAAAGCGCAGGAAGCAGGAGTCCCCGCGACAATTTCTG CTGGAATTTGGCCGGGAGTCGACCAGCTCATGGCGGTTCAGGCGAGATAT GACGAGACGAGACGAGACGATTCGTCGCGTGCCCTGCACGCGCTAGCCCG ACCATGTACAGCACTTTTTTGGCTTGTCATCGGTGAACGCGAGTATCGCC CCCTGTTTTTGACAATTGTGTATCCCACATTTTCCCCTTCGTCTACTACG GTTACTATTTTATTATTATGTCTTCCATGGTGCAGGCGTGCGATATGCTG GGAGGTCCCAGCGAGGTTGCGTCCATCGATTTCTCGGCGTACACAGCTGG AACGGGGAATGCGGGCACCACCATCCTTAGCGCTACGGTGATGGCCCTTT TGGAATGCCCAAGTTTAGCTATAGGGAAGATCCTGCTGTGCTCCGCGGGA TACTAAAAGTCACCTGAGGGCGCGAAGAGCTTGCTTGATGTATCCATCTC ACAGATTGCAGTGCCACCGTGTCCAATATGTTCGTCAATGTTCTGTTGAG TCATGAACATGAATTCTCACCGTATGATGTGTGAATTTTTTGGAGATTGA ACTAGAAGCCACTCTCTTACCCCCGTCTCCTCTCTCTCTCGCGCGCGCTC ACCGTGACCGGACGTGCTACAAAAAGACCTCCTTCCTGAATACTGATATT TACCCCTAGGTAGCGTTGCGTGTGTTGGTCAGTATCTACCTGAGTGTGCT TGACTCCTAGCGTGTCAATGGTCCTGACCAGCCCAATGTTGCGGAAAGAA AGCCCCGTAAAGCTTCGATCCTTGTGAGGCTCGGCCGGACGCATCTTGGT GCTGTAGTCAGAGCCAGTGTCCTGCTTTGTTTCCTCAACATGGAATACGA CGAAGAATGCAGTTGCCTTATCTCCTATGTCTGTTGGTGGCGTTTCAAAC CTTGGTATCCCCAGTTTCTGATTCTGTGCGAGAAGGTTCTTGGGTTCAAA GATGGGAAGCAAGTGTTCCACGAACCGGCGAGCGGTTTCAAAAAGGTCGA CTTCGGGGACTCTATTGGGGAGAAAACGGTGCGCACTGCTGTCTATGCTC ATGCTAAGGTTGTCTAGCGAAGGGGAGGGGCAACCGCGGTGTGGATTGTG ATTGTGAAGCAGGCTTGCGGGCTGTTGTGGATGTCGTGTTTGATTAGAAA TGGCGACTAGCGCCATGTTGCGTGCAAGTCCGGGTGTCGCATTACTCGCA GTGAGCCGGTGCGGGCGTTATATTTCCTGGCGACGTTTGCGTGACTCTTG ATACGGCGATAATTCTCGGCCGTAGTTTCTCTCTCTGTTGCGATGTCGGT GTGGCGCCGTCGTTAGCTGGATTTCGTACTAGCTGCTTGCACGGTTTGTT GGTTGGGGTCCTGCTGCTATGCTCGATTAGCTCTCGAGGGAGATTGTCCC ATCGTGCTGACATGCGACCCCTTCGATGATATTACAGGTGTTTCGAATGA ATCTCATCGAGTCCTTCACGTGCAATCAAGTGCTGGGCATCCCTAACATC AGCACGTGAGTCTGATGAGTCATACACAAAACATAACTGTGTCTTTTTTG TTGCCTTCGCCGTTCGTGTAGTGCACCAGTTGAGTACGGAGGTGCTGTCT TGGGTAAACATGTGTTGAAGCACTGCAGGTGACGAGGCCAGCGGACTCTT TTTGCCGTATTCACCTGCTGCGTTTCAGCAGGAGTCAAGGTTTTGCTCTT GGAGCTTTGTCTCGCTATTGGGTCTAGCATATCCTACTTAAGTTGTCGAA AATTGTCAAAATTCTGGAACCTTTCTCCTACATTATATCGGTAAACCAAC ATGTGGATGAACATATGTAATGCTCTTAGAATTGGTTGTGGCCCGTCTCA CGATAGCCGTATAGTCCAGTTCAGCTCTCTTTGCCTTTCCGAGTGTGGGG GAGGGAAAACCCACGATGTTTTTTTATAACAGAGGTTGCTTTTTCGCAGA CGTGTGTTTTTCTCGTCGTTCAATCACCATCGACGGTCCGGACAGTTCCT AGCCAAAGGTACAGTAGCAAGGCAAGGGCGGCCAAATCTTTGGGATGCGG TCGAGTCCCAGCCTTCACCGGCGCATTTTTTTTCGGTAATATGTTCAACA AATTTTTATGATCGCAACTAATACCTTGTGCCGATGCTCGCTCTAATAAT GACGAACTGTCTGCTTCCCATGGTAGCAATTAACGTAAACGTAACATGCT CGGCCGGGCACTCGGTTGAACATCTTTCCCGCCAAATGCAATCTCTGGAT AGTTTTCCCTCTCGTCTATTTTGGCGTTCGCTATCCCCCCTTCGGTGTGA TCCAGCTTCTTCGGCACTTCGCCCGAGCCGTGGAACTATTTGCTGAAGGG GATGACGCGGCTGCCACAAAGCATTATGGGAAATCGGGACATGATGCAAG CGTTCGCAGAGTTCTCGGAGCCCCTTGTCCGAATAACAGACAAACTGGTG CGTGCGTGTCATGATAATGTTCTTGTCTGTCTGTCCCCTGAAGGTTGGAC GTGCCAGACACACGCTATCGAGCAAGGAGCCCACAGAGCAAAAAATGCAA GGAAGTTAGAAGTTCAATACACGTGAAAATTATTTACACAGCATTCAGTG TTTTGTGCCACGGGCGGGTAGACGATACTTGAACGTAATTGGTGACTGGT GTATCAAATATCGACTGAATGGTGTCCGTGGTATATCGATATGCAAATTA TGCATACATACTTTAGGCACGATCGCAGTGGCGACTTGGTTATTTGTTGA CATCGGATATTATTTTCTGCAATTTCTTCAACTTGTAATTTGGCTGTGTC TTTTTTTCGTAGGTAGGAAGACGAAAACTGGCGGTAAAACCCAAAACGCG GAGCCGAGCATCAGCTTTCCCATCTTTTAATCGTTTCTCCATATTTTTCT TCCCGAATCGGTAAAAGCCTTTTTCCCCGAAGGCATACACACACTAGCAA GAGCGGATGTCAACAACGTTGATCTGTCTACTCGTTGCCTCGTCTGCACT TATATTCAATAGGTTGGGGCGACAAATGCCATGCGCATGGAAGCCGTGGC GAAGGATGGCCGTAAGGCGGTCGTCCGATACGCTCACGAGGATCTCGAGG TTTGCGTAGGTATCGCTACAGCCGCCTTTGCGATGGCCACCCTGCGAGGA GACGTGAGTTTTATCTTAGCGCCTGTTATCTGGGGCGGACAATTTCTTCA CGGATGGTTTGTTAAAATACAGTTGGTTGAATTTGTCCTGTTGTTGTGTC TTGCCCTCCACCATGCTCACATCAGACGGATATCCTCTTGGGTTTTGAGA TGGTATAAAAGTGTCGTTATCTTTCCCACATTAATCAGAACTCGTGTGCA AAATAAGCAAATCGTTAAAGCTCTCGTCATGTGCTTGCCTCTTCATCTTT CCCGCACGTAGTGCACGTACGCATGTTCACGTGTTGCCGACCTTCTACTA CAGCAATTTTTGAAAATATCATGCTGAGAGCTGCGCATGGTGAGCTCCTT GTGCGTGTTTTGTTTCTTACCTTCGATGGCGGCAGGTGCCAGCAGGCGTA TGGTTTCCAGAAGAGGCGTTCGAAGACAAGAGCAAGCGCATACGTCTCTT TGGTGAAGCCACAAGAGGAGCCTTCATGTGGGAGAGCGAAAATGACGGGA GTATCAAGGCTGGGGTGGTCTAGCTCTGAAGTAATCCTTACGCTGTGCTG AACGGTGGGGTCGGTGTTGGCGAACGTTGACGTGCGCACGTACATGGATG CATCGGGAGGGTACGGGATCTGATGTTCATCTGACCGCTATTTCAAATAG TAAGATAGAAGATGTGTTTCTTGCACCCCCCGGACAAATACGAATATTTG CAAATGGTTTTCACAAAAAGCTTAATGTATTCGCCTGAGTTTGAGAATGA GCCGGTACATAGAATCAAGTACCCACCCCTGTCCATTCGATTTACAGTAT TACTAGCAGTCGTGGATGGTCCGGGGCACATGAAATATACGAGCTCAGTC TAGAACTCAGACGATTACTTTCAGTCTTATGTAAAAATCATTTGCAAATA TTCTTATTTGTACGGCGGGTTGTTTCTCGTCAATTTAGTGTGTTATCAAC ACGTTTTCCCCAATTGACCTGACATCAAATTTCTAAACCTAACACCGCAA GCGCTGTAAGTGCAACTGGTTCAACACTGCGGGTGTGGCATACTGTAGAA CGTGATGTGGGTCTTAATAATTTTACAGACAGTGCGATACTTATCGAAGA TTTCGCGCGGAAGCAACACGTTCTGTTGCTGTTTGTGTCGTTGATTGCTT CGTGTCATTGGCACCAAGATGCTCGTGCAAAGGCAGAAATTCACCAGTTC TACAGCTTTGTGAATCTTCACGACCCCTATAATTGCTATATTGGCTAAAA CGGGCATCGCGTCTACTTGAATTTCATCGACAGGCTGGCTGCAGTCCGTG GATAATGCCAAAATATGTAATGTGACGCGCATTGTTGCGTGGAGCGTCAC CGATGGGGGTCTCTCTCATTGACCAGTAGAAAAAAAGAAGTATATACATT AAATCGGTCAATTTGATTGGAAGACTAATGTCATACGAAAAAGAAGAAAG AAGAGCGAGGACACGATGTTCGTGTATTGTAGAAGAATCTTGAAGTGTAT ATCTTATATTTAGAAAAAGCCGAATGCTACAGTATCCGTGTAGAGAAAGG AATTAAGACTCAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1291:1441..9153-

>mRNA_H-paniculata_contig1291.1825.1 ID=mRNA_H-paniculata_contig1291.1825.1|Name=mRNA_H-paniculata_contig1291.1825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at H-paniculata_contig1291:1441..9153- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCAAAGGGTTGCACCAAAAAGCGCAGGAAGCAGGAGTCCCCGCGAC
AATTTCTGCTGGAATTTGGCCGGGAGTCGACCAGCTCATGGCGGTTCAGA
TGGCCAAAGGGTTGCACCAAAAAGCGCAGGAAGCAGGAGTCCCCGCGACA
ATTTCTGCTGGAATTTGGCCGGGAGTCGACCAGCTCATGGCGGTTCAGGC
GTGCGATATGCTGGGAGGTCCCAGCGAGGTTGCGTCCATCGATTTCTCGG
CGTACACAGCTGGAACGGGGAATGCGGGCACCACCATCCTTAGCGCTACG
GCGTGCGATATGCTGGGAGGTCCCAGCGAGGTTGCGTCCATCGATTTCTC
GGCGTACACAGCTGGAACGGGGAATGCGGGCACCACCATCCTTAGCGCTA
CGTTTCTGATTCTGTGCGAGAAGGTTCTTGGGTTCAAAGATGGGAAGCAA
GTGTTCCACGAACCGGCGAGCGGTTTCAAAAAGGTCGACTTCGGGGACTC
TATTGGGGAGAAAACGTTTCTGATTCTGTGCGAGAAGGTTCTTGGGTTCA
AAGATGGGAAGCAAGTGTTCCACGAACCGGCGAGCGGTTTCAAAAAGGTC
GACTTCGGGGACTCTATTGGGGAGAAAACGGTGTTTCGAATGAATCTCAT
CGAGTCCTTCACGTGCAATCAAGTGCTGGGCATCCCTAACATCAGCACGT
GTTTCGAATGAATCTCATCGAGTCCTTCACGTGCAATCAAGTGCTGGGCA
TCCCTAACATCAGCACCTTCTTCGGCACTTCGCCCGAGCCGTGGAACTAT
TTGCTGAAGGGGATGACGCGGCTGCCACAAAGCATTATGGGAAATCGGGA
CATGATGCAAGCGTTCGCAGAGTTCTCGGAGCCCCTTGTCCGAATAACAG
ACAAACTGCTTCTTCGGCACTTCGCCCGAGCCGTGGAACTATTTGCTGAA
GGGGATGACGCGGCTGCCACAAAGCATTATGGGAAATCGGGACATGATGC
AAGCGTTCGCAGAGTTCTCGGAGCCCCTTGTCCGAATAACAGACAAACTG
GTTGGGGCGACAAATGCCATGCGCATGGAAGCCGTGGCGAAGGATGGCCG
TAAGGCGGTCGTCCGATACGCTCACGAGGATCTCGAGGTTTGCGTAGGTA
TCGCTACAGCCGCCTTTGCGATGGCCACCCTGCGAGGAGACGTTGGGGCG
ACAAATGCCATGCGCATGGAAGCCGTGGCGAAGGATGGCCGTAAGGCGGT
CGTCCGATACGCTCACGAGGATCTCGAGGTTTGCGTAGGTATCGCTACAG
CCGCCTTTGCGATGGCCACCCTGCGAGGAGACGTGCCAGCAGGCGTATGG
TTTCCAGAAGAGGCGTTCGAAGACAAGAGCAAGCGCATACGTCTCTTTGG
TGAAGCCACAAGAGGAGCCTTCATGTGGGAGAGCGAAAATGACGGGAGTA
TCAAGGCTGGGGTGGTCTAGGTGCCAGCAGGCGTATGGTTTCCAGAAGAG
GCGTTCGAAGACAAGAGCAAGCGCATACGTCTCTTTGGTGAAGCCACAAG
AGGAGCCTTCATGTGGGAGAGCGAAAATGACGGGAGTATCAAGGCTGGGG
TGGTCTAG
back to top