mRNA_H-paniculata_contig12907.1824.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12907.1824.1
Unique NamemRNA_H-paniculata_contig12907.1824.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12907.1824.1 vs. uniprot
Match: J4VU23_BEAB2 (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Beauveria bassiana (strain ARSEF 2860) TaxID=655819 RepID=J4VU23_BEAB2)

HSP 1 Score: 85.1 bits (209), Expect = 3.290e-17
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 1
Query:   13 SASYLPVEPNNRRETQASQEWKQWKRAEEAEMGGLIRNKMWDQVKRPDDKLVVGTKTIYKRTIGENGELEKHKCRLVAQGFRQIKGLHYQETF 291
            +A  L  EPNNR+   AS E +QW++A + E   LI N+ W  VKRP D+ V+  + ++KR +G +GE+ +HK R V +GF QI GL + ET+
Sbjct:  108 AAIMLGPEPNNRKSALASAEREQWEQAMQEEYNSLIENQTWTVVKRPADRKVLTGRWVFKRKLGSDGEVARHKARFVVRGFSQIYGLDFDETY 200          
BLAST of mRNA_H-paniculata_contig12907.1824.1 vs. uniprot
Match: A0A179EXK4_METCM (Retrotransposon protein, Ty1-copia subclass n=2 Tax=Pochonia chlamydosporia 170 TaxID=1380566 RepID=A0A179EXK4_METCM)

HSP 1 Score: 84.3 bits (207), Expect = 8.030e-17
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   34 EPNNRRETQASQEWKQWKRAEEAEMGGLIRNKMWDQVKRPDDKLVVGTKTIYKRTIGENGELEKHKCRLVAQGFRQIKGLHYQETF 291
            EPNNR+   AS E +QW++A + E   L+ N+ W  VKRP D+ V+  + ++KR +G NGE+ +HK R V +GF QI GL + ET+
Sbjct:  112 EPNNRKSALASAEREQWEQAMQEEYNSLMENQTWRVVKRPADRKVLTGRWVFKRKLGSNGEVARHKARFVVRGFSQIYGLDFDETY 197          
BLAST of mRNA_H-paniculata_contig12907.1824.1 vs. uniprot
Match: A0A2S7YPY4_BEABA (Uncharacterized protein n=1 Tax=Beauveria bassiana TaxID=176275 RepID=A0A2S7YPY4_BEABA)

HSP 1 Score: 84.0 bits (206), Expect = 1.160e-16
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   34 EPNNRRETQASQEWKQWKRAEEAEMGGLIRNKMWDQVKRPDDKLVVGTKTIYKRTIGENGELEKHKCRLVAQGFRQIKGLHYQETF 291
            EPNNR+   AS E +QW++A + E   LI N+ W  V+RP D+ V+  + ++KR +G NGE+ +HK R V +GF QI GL + ET+
Sbjct: 1635 EPNNRKSALASAEREQWEQAMQEEYNSLIENQTWRVVERPADRKVLTGRWVFKRKLGSNGEVARHKARFVVRGFSQIYGLDFDETY 1720          
BLAST of mRNA_H-paniculata_contig12907.1824.1 vs. uniprot
Match: A0A075B0V5_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0V5_ROZAC)

HSP 1 Score: 81.6 bits (200), Expect = 7.110e-16
Identity = 33/73 (45.21%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   79 QWKRAEEAEMGGLIRNKMWDQVKRPDDKLVVGTKTIYKRTIGENGELEKHKCRLVAQGFRQIKGLHYQETFPP 297
            +W++A +AE   L+ N  W+ ++ P D+  +G+K ++K    E GE+EK+K RLVAQGF+Q+KG+ Y+ETF P
Sbjct:  113 EWRKAMQAEYNALMSNGTWELMELPPDRKAIGSKWVFKTKYNERGEVEKYKARLVAQGFKQVKGVDYEETFSP 185          
BLAST of mRNA_H-paniculata_contig12907.1824.1 vs. uniprot
Match: A0A177U0P2_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U0P2_9BASI)

HSP 1 Score: 81.6 bits (200), Expect = 7.370e-16
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   13 SASYLPVEPNNRRETQASQEWKQWKRAEEAEMGGLIRNKMWDQVKRPDDKLVVGTKTIYKRTIGENGELEKHKCRLVAQGFRQIKGLHYQETFPP 297
            SA  + +EP  R+E Q   +W QW+ AE  ++  L +   W +V  P D+  +G + +YK  + E+G  ++HK RLVAQGF QI G  Y ETF P
Sbjct:  696 SADGVVLEPATRKEAQRRGDWAQWEAAEMGQLAALEQFGTWVEVALPKDRQAIGCRWVYKLKLNEDGNADRHKARLVAQGFSQIPGQDYTETFAP 790          
BLAST of mRNA_H-paniculata_contig12907.1824.1 vs. uniprot
Match: A0A2Z6P936_TRISU (Integrase catalytic domain-containing protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P936_TRISU)

HSP 1 Score: 81.3 bits (199), Expect = 1.010e-15
Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   31 VEPNNRRETQASQEWKQWKRAEEAEMGGLIRNKMWDQVKRPDDKLVVGTKTIYKRTIGENGELEKHKCRLVAQGFRQIKGLHYQETFPPKSH 306
            +EP N +E    +    W  A + E+G   RN++WD V RP++  V+GTK +YK    ENG + ++K RLVAQG+ QI+G+ + ETF P +H
Sbjct:  936 IEPRNVKEALTDE---YWINAMQEELGQFKRNEVWDLVPRPENVNVIGTKWVYKNKSDENGNVTRNKARLVAQGYAQIEGVDFDETFAPVAH 1024          
BLAST of mRNA_H-paniculata_contig12907.1824.1 vs. uniprot
Match: A0A2Z6P121_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P121_TRISU)

HSP 1 Score: 80.5 bits (197), Expect = 1.870e-15
Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   31 VEPNNRRETQASQEWKQWKRAEEAEMGGLIRNKMWDQVKRPDDKLVVGTKTIYKRTIGENGELEKHKCRLVAQGFRQIKGLHYQETFPP 297
            +EP N +E  A +    W  A + E+G   RN++WD V RP++  V+GTK +YK    ENG + ++K RLVAQG+ QI+G+ + ETF P
Sbjct: 1008 IEPRNVKEALADE---YWINAMQEELGQFKRNEVWDLVPRPENVNVIGTKWVYKNKSDENGNITRNKARLVAQGYAQIEGVDFDETFAP 1093          
BLAST of mRNA_H-paniculata_contig12907.1824.1 vs. uniprot
Match: A0A4S4LPF2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LPF2_9AGAM)

HSP 1 Score: 79.0 bits (193), Expect = 6.400e-15
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   34 EPNNRRETQASQEWKQWKRAEEAEMGGLIRNKMWDQVKRPDDKLVVGTKTIYKRTIGENGELEKHKCRLVAQGFRQIKGLHYQETFPP 297
            EP N  E +   +W  W+ A + E+G + +   W+ V RP D  VVG+K ++K   G +GE+ K+K RLVAQGF Q+ G+ Y +TF P
Sbjct:  347 EPRNVTEARRGSDWSHWEAAMKTELGMIEKLGTWELVDRPSDANVVGSKWVFKIKRGADGEIIKYKARLVAQGFTQVPGIDYSDTFAP 434          
BLAST of mRNA_H-paniculata_contig12907.1824.1 vs. uniprot
Match: A0A177TF55_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TF55_9BASI)

HSP 1 Score: 79.0 bits (193), Expect = 6.520e-15
Identity = 37/95 (38.95%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   13 SASYLPVEPNNRRETQASQEWKQWKRAEEAEMGGLIRNKMWDQVKRPDDKLVVGTKTIYKRTIGENGELEKHKCRLVAQGFRQIKGLHYQETFPP 297
            SA    +EP + RE Q  Q+W +WK+A + ++  L     WD ++ P D+  +G++ +YK  + ENG   + K RLVAQGF Q++G+ + ETF P
Sbjct:  711 SADGEELEPVSYREAQQRQDWPKWKQAMDEQLKALDGMHTWDVMELPPDRKAIGSRWVYKLKLDENGNAARWKARLVAQGFTQVEGIDFTETFAP 805          
BLAST of mRNA_H-paniculata_contig12907.1824.1 vs. uniprot
Match: A0A5N6LDC3_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LDC3_9ASTR)

HSP 1 Score: 78.2 bits (191), Expect = 1.180e-14
Identity = 31/73 (42.47%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   79 QWKRAEEAEMGGLIRNKMWDQVKRPDDKLVVGTKTIYKRTIGENGELEKHKCRLVAQGFRQIKGLHYQETFPP 297
            +WK+A + E+  + +N  WD +  P++K +VG K +YK  +G+NGE+ KHK RL+A+G+ Q KG+ + +TF P
Sbjct:  191 EWKKAMKEEISSIEKNGTWDLIDAPENKNIVGLKWLYKTKVGKNGEIVKHKARLMAKGYSQQKGIDFHDTFAP 263          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12907.1824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
J4VU23_BEAB23.290e-1744.09Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A179EXK4_METCM8.030e-1745.35Retrotransposon protein, Ty1-copia subclass n=2 Ta... [more]
A0A2S7YPY4_BEABA1.160e-1645.35Uncharacterized protein n=1 Tax=Beauveria bassiana... [more]
A0A075B0V5_ROZAC7.110e-1645.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177U0P2_9BASI7.370e-1641.05Integrase catalytic domain-containing protein n=1 ... [more]
A0A2Z6P936_TRISU1.010e-1542.39Integrase catalytic domain-containing protein n=2 ... [more]
A0A2Z6P121_TRISU1.870e-1543.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A4S4LPF2_9AGAM6.400e-1542.05Integrase catalytic domain-containing protein n=1 ... [more]
A0A177TF55_9BASI6.520e-1538.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6LDC3_9ASTR1.180e-1442.47Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12907contigH-paniculata_contig12907:193..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score85.1
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog176275.XP_008602273.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,3TMCJ@5125,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelHypocreales
Best eggNOG OGNA|NA|NA
Exons1
Model size315
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.0330503-CDS-H-paniculata_contig12907:192..5071622929017.0330503-CDS-H-paniculata_contig12907:192..507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12907 193..507 -
1691480700.7400298-CDS-H-paniculata_contig12907:192..5071691480700.7400298-CDS-H-paniculata_contig12907:192..507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12907 193..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12907.1824.1prot_H-paniculata_contig12907.1824.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12907 193..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12907.1824.1

>prot_H-paniculata_contig12907.1824.1 ID=prot_H-paniculata_contig12907.1824.1|Name=mRNA_H-paniculata_contig12907.1824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MPKGSASYLPVEPNNRRETQASQEWKQWKRAEEAEMGGLIRNKMWDQVKR
PDDKLVVGTKTIYKRTIGENGELEKHKCRLVAQGFRQIKGLHYQETFPPK
SHSG*
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mRNA from alignment at H-paniculata_contig12907:193..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12907.1824.1 ID=mRNA_H-paniculata_contig12907.1824.1|Name=mRNA_H-paniculata_contig12907.1824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig12907:193..507- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAAGGGATCGGCGAGCTACCTCCCGGTGGAGCCCAACAACCGCCG GGAAACTCAGGCTTCGCAGGAGTGGAAACAATGGAAAAGAGCTGAAGAGG CGGAAATGGGCGGTCTCATACGAAACAAGATGTGGGACCAAGTGAAACGT CCTGACGACAAGCTAGTGGTGGGAACGAAAACGATATACAAGCGAACGAT CGGCGAGAACGGCGAATTGGAAAAGCACAAGTGTCGCCTCGTTGCCCAAG GATTCCGCCAAATCAAAGGACTTCACTACCAAGAGACTTTCCCCCCTAAA TCTCACAGCGGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12907:193..507-

>mRNA_H-paniculata_contig12907.1824.1 ID=mRNA_H-paniculata_contig12907.1824.1|Name=mRNA_H-paniculata_contig12907.1824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig12907:193..507- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAAGGGATCGGCGAGCTACCTCCCGGTGGAGCCCAACAACCGCCG
GGAAACTCAGGCTTCGCAGGAGTGGAAACAATGGAAAAGAGCTGAAGAGG
CGGAAATGGGCGGTCTCATACGAAACAAGATGTGGGACCAAGTGAAACGT
CCTGACGACAAGCTAGTGGTGGGAACGAAAACGATATACAAGCGAACGAT
CGGCGAGAACGGCGAATTGGAAAAGCACAAGTGTCGCCTCGTTGCCCAAG
GATTCCGCCAAATCAAAGGACTTCACTACCAAGAGACTTTCCCCCCTAAA
TCTCACAGCGGCTAGATGCCAAAGGGATCGGCGAGCTACCTCCCGGTGGA
GCCCAACAACCGCCGGGAAACTCAGGCTTCGCAGGAGTGGAAACAATGGA
AAAGAGCTGAAGAGGCGGAAATGGGCGGTCTCATACGAAACAAGATGTGG
GACCAAGTGAAACGTCCTGACGACAAGCTAGTGGTGGGAACGAAAACGAT
ATACAAGCGAACGATCGGCGAGAACGGCGAATTGGAAAAGCACAAGTGTC
GCCTCGTTGCCCAAGGATTCCGCCAAATCAAAGGACTTCACTACCAAGAG
ACTTTCCCCCCTAAATCTCACAGCGGCTAG
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