mRNA_H-paniculata_contig129.1816.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig129.1816.1 vs. uniprot
Match: D7FXX0_ECTSI (CDAN1-interacting nuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX0_ECTSI) HSP 1 Score: 435 bits (1119), Expect = 5.790e-148 Identity = 212/276 (76.81%), Postives = 239/276 (86.59%), Query Frame = 1 Query: 202 MLKMDYDRAVQLCSRSIERGFDLTTAHTAEAGLPFDATYCLRRQMFSRHIRRIDSKCKQRTEEFLKQYEQGMRIVDIARQPGVRYSPYLMARIFVEVLETDRAGKKVAQLMRTPSLIKNERLRHEVGACCSEDMDYSPYLDRVRRGIGAEHEFVLQQKLRARGIPFESESDLRQQGAYKTPDMLLQVPMAVKGPNDEWLVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLISPSFQGFKKDIVVEDDFPSPIMLPDGQVL 1029 MLK DY RAV LC SI+ GFDLTT+HT+ LP+DA LRRQMFSRHIR++D +CKQRT+EFL QY +G RI+DIARQPG+RYSPYLMARI V LE G +AQLMRTPSLI +ERLR EV C S+D DYSP+LDRVRRG+GAE+EFVLQQKLRARG+ FESESDLRQ+GAYKTPDMLLQ PMAVKGP +EW++VSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFG+VETL+SP F G+KKDI+V+ DFPSPIMLPDGQVL Sbjct: 1 MLKADYHRAVALCKASIDGGFDLTTSHTSVESLPYDALQSLRRQMFSRHIRKVDWRCKQRTKEFLTQYRKGSRIIDIARQPGLRYSPYLMARILVGALEP---GAAIAQLMRTPSLILDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRARGVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWVIVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGYVETLVSPEFDGYKKDIMVKADFPSPIMLPDGQVL 273
BLAST of mRNA_H-paniculata_contig129.1816.1 vs. uniprot
Match: A0A7S2SDJ1_9STRA (CDAN1-interacting nuclease 1 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDJ1_9STRA) HSP 1 Score: 191 bits (484), Expect = 6.340e-53 Identity = 109/264 (41.29%), Postives = 156/264 (59.09%), Query Frame = 1 Query: 238 CSRSIERGFDLTTAHTAEAGLPFDATYCLRRQMFSRHIRRIDSKCKQRTEEFLKQYEQGMRIVDIARQPGVRYSPYLMARIFVEVLETDRAGKKVAQLMRTPSLIKNERLRHEVGACCSEDMDYSPYLDRVRRGIGAEHEFVLQQKLRARGIPFESESDLRQQGAYKTPDMLLQVPMAVKGPN-DEWLVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLISPSFQGFKKDIVVEDDFPSPIMLPDGQV 1026 C RSI+ G + + +A LRRQ+ +R IR + + + E L+++++G ++ IA+ R+ P+L+AR VE + GK++ L+R P I + RLR EV D D +P D +R IG E+EFVLQ++L A G+P+++E DL+ QG KTPD L+ P+AV+ P EW V WIDSKAMFGD T+ +EH QL SYV+R+GPGLV+YWFGF E L P +I + D P ++LP G V Sbjct: 16 CERSIQAGDPIDWRTLVSPDIDIEAILSLRRQIHTRWIRANTPRVRGASAEILRRWQKGEHVISIAK--AFRHPPFLLARGVVERV-CHVTGKRIGDLVRHPERITDPRLRREVQEAAEADPDCAPRSDAIREVIGREYEFVLQRRLEALGVPYQTEEDLKTQGHSKTPDAWLRAPVAVQDPRVGEWRQVCWIDSKAMFGDVETFGKEHSMQLESYVHRFGPGLVVYWFGFDEEL--PRLD----NICISTDVPIQMVLPGGDV 270
BLAST of mRNA_H-paniculata_contig129.1816.1 vs. uniprot
Match: W7TNV0_9STRA (CDAN1-interacting nuclease 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNV0_9STRA) HSP 1 Score: 184 bits (466), Expect = 1.690e-50 Identity = 109/247 (44.13%), Postives = 148/247 (59.92%), Query Frame = 1 Query: 307 DATYCLRRQMFSRHIRRIDSKCKQRTEEFLKQYEQGMRIVDIARQPGVRYSPYLMARIFVEVLETDRAGKKVAQLMRTPSLIKNERLRHEVGACCSEDMDYSPYLDRVRRGIGAEHEFVLQQKLRARGIPFESESDLRQQGAYKTPDMLLQVPMAVKGPNDEWLVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGF---VETLISPSFQGFKKDIVVEDDFPSPI---MLPDGQVL 1029 DA +R Q RH++ + ++ + +QYE G I +IAR+ + Y PYL+AR+ VEVL KV +LMR P LI N RLR EV C + D D+SP DRV R IG ++E LQ +LRA IPFE E+ LR +G KTPD+ L VP+ V + VV+WIDSKA++G T+ E Q+ YVNR+GPG V++WFGF V+ L+S + +VV DDFP P+ +L +G VL Sbjct: 18 DALLSIRHQRLVRHVKAVSGDHRRHVLAYCRQYEAGQSIHEIARR--LCYPPYLLARMLVEVLCKVGTRTKVTELMRAPHLIANHRLRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRALAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQ----ECHVVVIDDFPPPVEKLVLLNGDVL 258
BLAST of mRNA_H-paniculata_contig129.1816.1 vs. uniprot
Match: A0A4D9D1V9_9STRA (CDAN1-interacting nuclease 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V9_9STRA) HSP 1 Score: 184 bits (468), Expect = 6.350e-50 Identity = 108/247 (43.72%), Postives = 148/247 (59.92%), Query Frame = 1 Query: 307 DATYCLRRQMFSRHIRRIDSKCKQRTEEFLKQYEQGMRIVDIARQPGVRYSPYLMARIFVEVLETDRAGKKVAQLMRTPSLIKNERLRHEVGACCSEDMDYSPYLDRVRRGIGAEHEFVLQQKLRARGIPFESESDLRQQGAYKTPDMLLQVPMAVKGPNDEWLVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGF---VETLISPSFQGFKKDIVVEDDFPSPI---MLPDGQVL 1029 DA +R Q RH++ + ++ + +QYE G I +IAR+ V Y PYL+AR+ VEVL KV +LMR P LI N RLR EV C + D+D+SP DRV R IG ++E LQ +LRA +PFE E+ LR +G KTPD+ L VP+ V + VV+WIDSKA++G T+ E Q+ YVNR+GPG V++WFGF V+ L+S + +VV DDFP P+ + +G VL Sbjct: 89 DALLSIRHQRLVRHVKAVSGDHRRHVLAYCRQYEAGESIHEIARR--VCYPPYLLARMLVEVLCKVETRTKVTELMRAPHLIANHRLRREVMHCIAVDIDFSPGADRVSRSIGLDYERELQLRLRALAVPFEDEAMLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSAQ----ECHVVVIDDFPPPVEKLVFLNGDVL 329
BLAST of mRNA_H-paniculata_contig129.1816.1 vs. uniprot
Match: A0A2V3IVI7_9FLOR (CDAN1-interacting nuclease 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVI7_9FLOR) HSP 1 Score: 161 bits (408), Expect = 1.030e-41 Identity = 97/264 (36.74%), Postives = 148/264 (56.06%), Query Frame = 1 Query: 229 VQLCSRSIERGFDLTTAHTAEAGLPFDATYCLRRQMFSRHIRRIDSKCKQRTEEFLKQYEQGMRIVDIARQPGVRYSPYLMARIFVEVLETDRAGKKVAQLMRTPSLIKNERLRHEVGACCSEDMDYSPYLDRVRRGIGAEHEFVLQQKLRARGIPFESESDLRQQGAYKTPDMLLQVPMAVKGPNDEWLVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLISPSFQGFKKDIVVEDDFPSPIMLPDG 1020 + LCS S+ D++ + L D + Q+++R + R + K + F+K ++ G ++DIA SP L+AR +E L K + Q +R PS+I +ERLR +V C D SP DR+R +G E+E L+ +++ G FE+E DLR +G +KTPD+LL+VP++ + V+ WIDSKA FGD++T Q++ S + SY+ R+GPG+VIYWFGF+E S +VV D FP+ I G Sbjct: 7 LSLCS-SLRCKEDISRIAREQPHLSHDTIALIYEQLYTRQVARTFYQVKLHGKTFVKNFKNGQSLLDIAE--SFNLSPVLVARKVME-LHLGLNRKLITQALREPSMIGDERLRADVCLCIELDEHCSPRTDRLRHALGLEYELRLRDEVKNCGFEFETEDDLRNRGCHKTPDILLRVPISFRNK-----VIRWIDSKAKFGDKYTLNQDYTSSVSSYIGRFGPGMVIYWFGFIEDCDSGMLN--DNGLVVMDRFPTEIETLPG 259
BLAST of mRNA_H-paniculata_contig129.1816.1 vs. uniprot
Match: A0A3P3YCX7_PLABS (CDAN1-interacting nuclease 1 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YCX7_PLABS) HSP 1 Score: 156 bits (395), Expect = 2.960e-40 Identity = 83/205 (40.49%), Postives = 134/205 (65.37%), Query Frame = 1 Query: 385 EEFLKQYEQGMRIVDIARQPGVRYSPYLMARIFVEVLET-DRAGKKVAQLMRTPSLIKNERLRHEVGACCSEDMDYSPYLDRVRRGIGAEHEFVLQQKLRARGIPFESESDLRQQGAYKTPDMLLQVPMAVKGPNDEWLVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLISPSFQGFKKDIVVEDDFP 996 + ++++Y++G ++ IA+ + +P L+ARI + ET + K + Q +R P+L+ +ERLR+++ C D YSP +R+R +G E+EFVL + L G+PF+SE DLR++G KTPD+ L+ P+AV+G +V+WIDSKAMFGD T + + Q+Q+ YV+RYGPG++I+WFG+V+ + S DI++ FP Sbjct: 66 DSYVQRYQEGEELISIAK--SIDLAPCLLARIILR--ETLSMSPKDITQCLREPALVDDERLRNQLVRCVESDEHYSPSSERIRSALGLEYEFVLYESLFNTGVPFDSEDDLRREGRPKTPDVRLRSPIAVRGR-----IVNWIDSKAMFGDVRT-LADCQNQVRGYVHRYGPGMIIFWFGYVQEVDS------DPDIILSHGFP 254
BLAST of mRNA_H-paniculata_contig129.1816.1 vs. uniprot
Match: M2X2F4_GALSU (CDAN1-interacting nuclease 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X2F4_GALSU) HSP 1 Score: 155 bits (393), Expect = 2.100e-39 Identity = 86/204 (42.16%), Postives = 127/204 (62.25%), Query Frame = 1 Query: 403 YEQGMRIVDIARQPGVRYSPYLMARIFVEVLETDRAGKK-VAQLMRTPSLIKNERLRHEVGACCSEDMDYSPYLDRVRRGIGAEHEFVLQQKLRARGIPFESESDLRQQGAYKTPDMLLQVPMAVKGPNDEWLVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLISPSFQGFKKDIVVEDDFPSPIML 1011 Y+ G ++DI+ + V +P + R +LE GKK +++++R P IK++RLR EV AC +D Y P+ DR+R+ G ++E++L Q L GIPF++E+ LR +G +KTPD LL VP+ V G N V+SWIDSKA FGDE+ +++ + SYV RYG G+VIYWFGF+E + P + +V+ FP I L Sbjct: 121 YDSGQHLLDISERLNV--APCITVR---RLLEYKSFGKKQISRVLRNPYEIKDDRLRQEVIACIEQDEHYGPFADRMRQVQGLDYEYILYQHLEIMGIPFDTETSLRCKGLFKTPDALLHVPVKV-GTN----VISWIDSKAKFGDEYYLRRDYNDSISSYVGRYGSGMVIYWFGFLEDIDVPMLH--DQGVVLSSSFPKNIEL 312
BLAST of mRNA_H-paniculata_contig129.1816.1 vs. uniprot
Match: A0A0M0JP20_9EUKA (CDAN1-interacting nuclease 1 (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JP20_9EUKA) HSP 1 Score: 154 bits (390), Expect = 2.160e-39 Identity = 83/200 (41.50%), Postives = 123/200 (61.50%), Query Frame = 1 Query: 352 RRIDSKCKQRTEEFLKQYEQGMRIVDIARQPGVRYSPYLMARIFVEVLETDRAGKKVAQLMRTPSLIKNERLRHEVGACCSEDMDYSPYLDRVRRGIGAEHEFVLQQKLRARGIPFESESDLRQQGAYKTPDMLLQVPMAVKGPNDEWLVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLISPS 951 +R D + +++ + ++ ++ G +V I GV P +AR +E ++ G+ V QL++ P LI + RLRHEV ED + P++D + IG E+E +L QKLRA G+PF SE L+Q+G +KTPD LL VP+ V+G VV+WIDSKA FGD T+ + H Q Y++RY GLV+YWFGF E++ + S Sbjct: 50 KRTDGQHREQAQRYVDRFLAGESLVAIGNSIGV--PPTKLARYVLERHLGEKKGRDVGQLLKKPRLIADARLRHEVTMAIDEDPHFGPHVDAAKHIIGLEYEELLAQKLRALGVPFLSEEQLKQRGDFKTPDALLPVPLLVRGR-----VVNWIDSKATFGDPETHAEYHAKQFAGYLHRYDAGLVLYWFGFDESIDTDS 242
BLAST of mRNA_H-paniculata_contig129.1816.1 vs. uniprot
Match: K3WE22_GLOUD (CDAN1-interacting nuclease 1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WE22_GLOUD) HSP 1 Score: 155 bits (391), Expect = 1.430e-38 Identity = 99/259 (38.22%), Postives = 136/259 (52.51%), Query Frame = 1 Query: 445 GVRYSPYLMARIFVEVL-------------------ETDRAGKKVAQLMRTPSLIKNERLRHEVGACCSEDMDYSPYLDRVRRGIGAEHEFVLQQKLRARGIPFESESDLRQQGAYKTPDMLLQVPMAVKGPNDEWLVVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLISPSFQGFKKDIVVEDDFPSPIMLPDGQVL*GGVPDLGGRQEGVIRLRPNLRCRLRDGYWTIVYESTDSHYDPAW 1164 V +SP +MAR+ +E + D G + R S + +L EV C D SP DR+R +G E+E++L +KLR R + +ESE LR++G KTPD+ L +PM V+ + VV+WIDSKAMFGD HT+ E+ QL YVNRYGPG+VIYWFG V L + S D+V+ +FPS I+LP GG+ L E V+R R + LR T+ E+T +D W Sbjct: 124 SVDFSPCMMARVLLEAKYGWSKATISNFFKEAFNEGDEDGGGTRKEPNRRGLSEREYSQLLLEVRECIDRDKYCSPLADRIRHNMGVEYEYLLLEKLRNRKLVYESEDVLREKGLSKTPDVRLLLPMGVRDSHGVLRVVNWIDSKAMFGDRHTHESENAGQLQGYVNRYGPGMVIYWFGHVANLSTDS------DVVITHEFPSDIVLP------GGLDPL----ENVVRPREHAVLELR----TLPVETT---FDTEW 359
BLAST of mRNA_H-paniculata_contig129.1816.1 vs. uniprot
Match: A0A2P4XRT8_9STRA (CDAN1-interacting nuclease 1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRT8_9STRA) HSP 1 Score: 152 bits (384), Expect = 3.920e-38 Identity = 104/288 (36.11%), Postives = 149/288 (51.74%), Query Frame = 1 Query: 211 MDYDRAVQLCSRSIERGFDLTTAHTAEAGLPFDATYCLRRQMFSRHIRRIDSKCKQRTEEFLKQY----EQGMRIVDIARQPGVRYSPYLMARIFVEVL---ETDRAGKKVAQLMRTPSLIKNE------------RLRHEVGACCSEDMDYSPYLDRVRRGIGAEHEFVLQQKLRARGIPFESESDLRQQGAYKTPDMLLQVPMAVKGPNDEWL-VVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLISPSFQGFKKDIVVEDDFPSPIMLP 1014 MD D +CS D + + + + ++RQ+ R R + R E+ LK+Y + + IAR V +SP +MAR+ ++ + M+ S I+ + R+ E+ C ED+ SP DR+R +G E+E++L + LR R + FESE LR++G KTPD+ L +P+ +K PN L VV+WIDSKAMFGD HT+ E+ +QL YVNRYGPG+VIYWFG V L S S DI++ D FP I LP Sbjct: 1 MDEDEFELICS------LDAFPDSSPQLSVSEETFNVIKRQLLHRQFR--SALRLHRQEKTLKKYVARFDASETMCHIAR--SVAFSPCMMARLLLDAKYGWSKTTISNFFKEAMKDESEIETDTNRRGLSEDEFGRVMREIRECIDEDVHCSPLADRIRHNLGLEYEYLLLETLRNRQLVFESEDMLREKGLSKTPDVRLLLPIGIKDPNSGQLHVVNWIDSKAMFGDRHTHETENANQLQGYVNRYGPGMVIYWFGHVARLSSDS------DILIADAFPREISLP 272 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig129.1816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig129.1816.1 >prot_H-paniculata_contig129.1816.1 ID=prot_H-paniculata_contig129.1816.1|Name=mRNA_H-paniculata_contig129.1816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp MLKMDYDRAVQLCSRSIERGFDLTTAHTAEAGLPFDATYCLRRQMFSRHIback to top mRNA from alignment at H-paniculata_contig129:9853..19363- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig129.1816.1 ID=mRNA_H-paniculata_contig129.1816.1|Name=mRNA_H-paniculata_contig129.1816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9511bp|location=Sequence derived from alignment at H-paniculata_contig129:9853..19363- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig129:9853..19363- >mRNA_H-paniculata_contig129.1816.1 ID=mRNA_H-paniculata_contig129.1816.1|Name=mRNA_H-paniculata_contig129.1816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig129:9853..19363- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |