mRNA_H-paniculata_contig12895.1814.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12895.1814.1
Unique NamemRNA_H-paniculata_contig12895.1814.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12895.1814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12895contigH-paniculata_contig12895:161..1101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size321
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12895.1814.1prot_H-paniculata_contig12895.1814.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12895 161..1101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929015.2391884-CDS-H-paniculata_contig12895:160..3491622929015.2391884-CDS-H-paniculata_contig12895:160..349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12895 161..349 -
1691480699.8418124-CDS-H-paniculata_contig12895:160..3491691480699.8418124-CDS-H-paniculata_contig12895:160..349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12895 161..349 -
1622929015.2587261-CDS-H-paniculata_contig12895:645..7231622929015.2587261-CDS-H-paniculata_contig12895:645..723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12895 646..723 -
1691480699.8500016-CDS-H-paniculata_contig12895:645..7231691480699.8500016-CDS-H-paniculata_contig12895:645..723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12895 646..723 -
1622929015.2732658-CDS-H-paniculata_contig12895:1047..11011622929015.2732658-CDS-H-paniculata_contig12895:1047..1101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12895 1048..1101 -
1691480699.857359-CDS-H-paniculata_contig12895:1047..11011691480699.857359-CDS-H-paniculata_contig12895:1047..1101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12895 1048..1101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12895.1814.1

>prot_H-paniculata_contig12895.1814.1 ID=prot_H-paniculata_contig12895.1814.1|Name=mRNA_H-paniculata_contig12895.1814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MEGVCERRLTEAQQETRKDTQQLSNGITVTLDKAIRGINDRLKRLEEPER
FGLRPVLTNEDLATLRAAAATSTLEKEEIKQMVKTLETLVAEAAAKTARS
MHFEER*
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mRNA from alignment at H-paniculata_contig12895:161..1101-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12895.1814.1 ID=mRNA_H-paniculata_contig12895.1814.1|Name=mRNA_H-paniculata_contig12895.1814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=941bp|location=Sequence derived from alignment at H-paniculata_contig12895:161..1101- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGGGGTGTGCGAGAGGAGATTGACGGAGGCCCAGCAGGAGACTCG
AAAGGTGATGGTGTTCTTCTCGGCTTTGATAAGGATCAAGCTGCCTTACG
GCATCTTCATCGACCAATAGGAAAACTGACGACACGTTCCCCCTCTTTAT
CGTTCATTAGGGAAAGGAAGAGACACGACAACGTAGTAGTCTGAGGCTCA
CGAGCTACGGGAAAAAAAAGGGACAGCTCTTGCGTACTGGTGGAGCTAAA
ATATCGTGCCGTAAACGCCTTGTTGATATTGCGTGCGTGTTGTTTTTCGA
TGTCACATGTGCGATGTTCGACTTTTATTCGCATTTAATATTCTCCGAAA
CATGTCGATTGTTCCCCCATGTACACAGGATACGCAACAACTGTCGAACG
GGATTACAGTGACGCTGGACAAGGCTATCCGTGGGATAAACGACAGGCTC
AAGAGGGTGAGATTCAATACAGTTGCCCAAAGTCTTCGAAGAAAAACGCG
CCATGTACGCGTTGATGAGTGTGTTTGCACACGGAATTTTTGGTGTCGCG
TGTTTTTGATTCGAGCGAAGGTTGGTCTCCCGAGCATGGTGGACGGAATA
ATATGTACGCCAGCAGGAGGTGTGCACTCGAAGTTTGCCCCTGATATATT
CCTCCCGATTGCGCGCAAACTTCAAACGAGTATTCTTTACGCAGTACACC
ACCCTGTTCAACAACCACATTCATGTATGCGTGTTGATCACCGACGCCCC
AGCTAGAAGAACCGGAGCGATTCGGCCTACGGCCCGTCCTTACCAACGAA
GACCTGGCGACATTGCGGGCAGCGGCTGCGACGTCGACTCTAGAAAAGGA
AGAAATAAAACAAATGGTAAAAACGCTAGAGACCCTTGTTGCCGAGGCGG
CGGCTAAGACGGCGCGAAGCATGCATTTTGAAGAGAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12895:161..1101-

>mRNA_H-paniculata_contig12895.1814.1 ID=mRNA_H-paniculata_contig12895.1814.1|Name=mRNA_H-paniculata_contig12895.1814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig12895:161..1101- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGGGGTGTGCGAGAGGAGATTGACGGAGGCCCAGCAGGAGACTCG
AAAGATGGAAGGGGTGTGCGAGAGGAGATTGACGGAGGCCCAGCAGGAGA
CTCGAAAGGATACGCAACAACTGTCGAACGGGATTACAGTGACGCTGGAC
AAGGCTATCCGTGGGATAAACGACAGGCTCAAGAGGGATACGCAACAACT
GTCGAACGGGATTACAGTGACGCTGGACAAGGCTATCCGTGGGATAAACG
ACAGGCTCAAGAGGCTAGAAGAACCGGAGCGATTCGGCCTACGGCCCGTC
CTTACCAACGAAGACCTGGCGACATTGCGGGCAGCGGCTGCGACGTCGAC
TCTAGAAAAGGAAGAAATAAAACAAATGGTAAAAACGCTAGAGACCCTTG
TTGCCGAGGCGGCGGCTAAGACGGCGCGAAGCATGCATTTTGAAGAGAGG
TAACTAGAAGAACCGGAGCGATTCGGCCTACGGCCCGTCCTTACCAACGA
AGACCTGGCGACATTGCGGGCAGCGGCTGCGACGTCGACTCTAGAAAAGG
AAGAAATAAAACAAATGGTAAAAACGCTAGAGACCCTTGTTGCCGAGGCG
GCGGCTAAGACGGCGCGAAGCATGCATTTTGAAGAGAGGTAA
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