mRNA_H-paniculata_contig12885.1810.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12885.1810.1
Unique NamemRNA_H-paniculata_contig12885.1810.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12885.1810.1 vs. uniprot
Match: A0A2N9GWV7_FAGSY (Integrase catalytic domain-containing protein n=3 Tax=fabids TaxID=91835 RepID=A0A2N9GWV7_FAGSY)

HSP 1 Score: 207 bits (526), Expect = 9.480e-56
Identity = 133/390 (34.10%), Postives = 203/390 (52.05%), Query Frame = 1
Query:    1 LPAGRKAICAKWIFKRRLKEDGSVARYQARLVAQGVSQVEGEDFF*INAPVARISTLSTVFSLDAEFNFELEGMDVDAGYLNTPVEEEPFVNLSPEFSP---------------FSRDIPFRDLGSLSRALGIEVRRDRPKDTIAMSQGSYICEVLKICGFDECRGVSIPVEGKVKISGPEWADKPSEPQSLGSVLTSYGGPMSGRLQYMQA---HLSLSHYCVSDLGITFGDKSNGHG-LEGFIDADWAEDVEDQKSTTGYVYKLNGGAIIWCSRKQQLVTWSSTEAEYVAAGEPGNETVYLRELLGSMGFGCKGSTTLFEDKKSAINVSKEPSAHCRTKHIGVR*HGIREWVWVGVLALQYVQTGDQLADVLTQGLSRVKFRRLRNLL 1113
            LPAG K I  KW++K +  E G + +Y+ARLVA+G SQ  G D+  + APVAR+ T+  + +L A+ N+ +  +DV + +L+  + EE +V     +                   R+    DLG +   LGIEV +    D I + Q  Y  E+L+  G  E   V  P+    KIS  E  D   E         +Y   + G L Y+ A    +    + +  +      K  G G L  F D+D+A D+E++KST+GYV+ ++  A+ WCS+KQ +VT S+TEAE+VAA     + V+++ +L  +G    G TT+  D  S I +SK P  H R+KHI VR H +R     G + L +  + DQ+AD++T+ L    F++LR LL
Sbjct:  751 LPAGAKRIGVKWVYKTKYNEHGKIDKYKARLVAKGYSQKYGVDYTEVFAPVARMDTVRMIIALAAQKNWTIFQLDVKSAFLHGELSEEVYVEQPRGYEKKGSEHLVYKLHKALSMLREFDMSDLGKMRFFLGIEVLQK--SDGIYICQRKYALEILRRFGMMESNSVGSPIVPGFKISRDENGDFVDE---------TYYKQLVGSLMYLTATRPDMMFVTFLIRTMNYGIHYKKGGDGELLAFTDSDYAGDMENRKSTSGYVFLMSSSAVSWCSKKQPIVTLSTTEAEFVAAAVCACQGVWMKRILKELGHSDGGCTTVMCDNSSTIKLSKNPVMHGRSKHIDVRFHFLRNLTKEGTIELVHCGSQDQVADIMTKPLKLEAFQKLRKLL 1129          
BLAST of mRNA_H-paniculata_contig12885.1810.1 vs. uniprot
Match: A0A5N5G876_9ROSA (Uncharacterized protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G876_9ROSA)

HSP 1 Score: 206 bits (523), Expect = 2.790e-55
Identity = 146/422 (34.60%), Postives = 222/422 (52.61%), Query Frame = 1
Query:    1 LPAGRKAICAKWIFKRRLKEDGSVARYQARLVAQGVSQVEGEDFF*INAPVARISTLSTVFSLDAEFNFELEGMDVDAGYLNTPVEEEPFVNLSPE-----------------------------FSPFSR----DIPFRDLGSLSRALGIEVRRDRPKDTIAMSQGSYICEVLKICGFDECRGVSIPVEGKVKISGPEWADKPSEP--QSLGSV--LTSYGGPM----SGRLQYMQA----HLSLSHYCVS------DLGITFGDKSNGHGLEGFIDADWAEDVEDQKSTTGYVYKLNGGAIIWCSRKQQLVTWSSTEAEYVAAGEPGNETVYLRELLGSMGFGCKGSTTLFEDKKSAINVSKEPSAHCRTKHIGVR*HGIREWVWVGVLALQYVQTGDQLADVLTQGLSRVKFRRLRNLL 1113
            LP G K I  KW+FK +LKE+G V +Y+ARLVA+G  Q  G D+  + APVAR+ T+  V SL A+ N+ +  +DV + +L+  +EEE FV+  P                              F  F +    +    DLG +   LGIEV +    D + + Q  Y  E+L+    ++C  V  PV   +K++  E  +  S    Q +GS+  LT+    +    S   +YM+     HL ++   +       DLGI F  K     L G+ D+D+A D +D+KST+GYV+ ++ GA+ W S+KQ +VT S+TEAE++AA     + V+LR ++ S+     G T ++ D  SAI +SK P  H R+KHI +R H +R+ V  GVL L    + +Q+ADVLT+ L    F ++R L+
Sbjct:  978 LPPGGKTIGVKWVFKTKLKENGEVDKYKARLVAKGYCQQYGIDYAEVFAPVARLDTIRVVISLAAQKNWGIYQLDVKSAFLHGEIEEEVFVDQPPGYEQKGQESKILIACLYVDDLIFTGNDETMFEKFKKSMTAEFDMTDLGKMRYFLGIEVIQR--SDGVFIGQRKYAQEILEKFNMEQCNPVQNPVVPGLKLTKNEGVEVDSTVYRQMVGSLMYLTATRPDLMFVVSLISRYMERPTEEHLQVAKKVLRYVKGTVDLGI-FYKKGGTEELTGYTDSDYAGDQDDRKSTSGYVFMISSGAVSWSSKKQPVVTLSTTEAEFIAAASSACQVVWLRRIMESLNQEQNGPTLVYCDNVSAIKLSKNPVMHGRSKHIDIRFHFLRDLVKDGVLELVQCSSQEQVADVLTKPLKVDTFLKMRELM 1396          
BLAST of mRNA_H-paniculata_contig12885.1810.1 vs. uniprot
Match: A0A6A2YJM7_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YJM7_HIBSY)

HSP 1 Score: 201 bits (512), Expect = 7.670e-54
Identity = 141/432 (32.64%), Postives = 217/432 (50.23%), Query Frame = 1
Query:    1 LPAGRKAICAKWIFKRRLKEDGSVARYQARLVAQGVSQVEGEDFF*INAPVARISTLSTVFSLDAEFNFELEGMDVDAGYLNTPVEEEPFV-------------------------------------NLSPEFSPFS----RDIPFRDLGSLSRALGIEVRRDRPKDTIAMSQGSYICEVLKICGFDECRGVSIPVEGKVKISGPEWADKPSEPQSLGSVLTSYGGPMSGRLQYMQAHLSLSHYCVS--------------------DLGITFGDKSNGHGLEGFIDADWAEDVEDQKSTTGYVYKLNGGAIIWCSRKQQLVTWSSTEAEYVAAGEPGNETVYLRELLGSMGFGCKGSTTLFEDKKSAINVSKEPSAHCRTKHIGVR*HGIREWVWVGVLALQYVQTGDQLADVLTQGLSRVKFRRLRNLL 1113
            LP G KAI  KW++K +    G + R++ARLVA+G SQ  G D+  + APVAR+ T+  + SL A+  ++++ MDV + +LN  +EEE ++                                     N    F+ F     ++    D+G ++  LGIEV++    D I +SQ SY  E+LK    + C+ +S P E  +K++  E  +   +P    S++ S       R   + A   +S Y  S                    D G+ F   SN + L G+ D+DW  D+++++STTG+V+ +   A  W S+KQ +VT S+ EAEYV A     + ++LR LL  +G   +  T +  D KSAI +SK P  H R+KHI +R H IRE V    + ++YV++ DQ+AD+ T+ L    F RLRNLL
Sbjct:  789 LPKGHKAIGVKWVYKTKQNTKGEIERHKARLVAKGYSQKAGIDYDEVFAPVARLETIRLIISLAAQNKWKIQHMDVKSAFLNGVLEEEVYIQQPSGYEVKGHEDKVLKLKKALYGLKQAPRAWNSRIDNNPSMFNEFKDVMMKEFEMTDMGLMAYYLGIEVKQQN--DGIFISQKSYAKEILKKFKMENCKPISTPAEYGIKMTKHEEGES-VDPTFFKSLVGSIRYLTCTRPDILHAVGLVSRYMESPTTTHFKAAKRILRYLKGTIDFGL-FYSVSNYYKLVGYSDSDWGGDIDNRRSTTGFVFFMGDIAFTWMSKKQPIVTLSTCEAEYVVATSCVCQAIWLRNLLKEIGLIQEEPTKVCVDNKSAIALSKNPVFHDRSKHIDIRYHYIRECVARNDVEVEYVKSQDQVADIFTKPLKSEDFIRLRNLL 1216          
BLAST of mRNA_H-paniculata_contig12885.1810.1 vs. uniprot
Match: A0A6A3CBK1_HIBSY (Protein indeterminate-domain 6 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CBK1_HIBSY)

HSP 1 Score: 201 bits (512), Expect = 8.210e-54
Identity = 141/432 (32.64%), Postives = 218/432 (50.46%), Query Frame = 1
Query:    1 LPAGRKAICAKWIFKRRLKEDGSVARYQARLVAQGVSQVEGEDFF*INAPVARISTLSTVFSLDAEFNFELEGMDVDAGYLNTPVEEEPFV-------------------------------------NLSPEFSPFS----RDIPFRDLGSLSRALGIEVRRDRPKDTIAMSQGSYICEVLKICGFDECRGVSIPVEGKVKISGPEWADKPSEPQSLGSVLTSYGGPMSGRLQYMQAHLSLSHYCVS--------------------DLGITFGDKSNGHGLEGFIDADWAEDVEDQKSTTGYVYKLNGGAIIWCSRKQQLVTWSSTEAEYVAAGEPGNETVYLRELLGSMGFGCKGSTTLFEDKKSAINVSKEPSAHCRTKHIGVR*HGIREWVWVGVLALQYVQTGDQLADVLTQGLSRVKFRRLRNLL 1113
            LP G KAI  KW++K +    G + R++ARLVA+G SQ  G D+  + APVAR+ T+  + SL A+  ++++ MDV + +LN  +EEE ++                                     N    F+ F     ++    D+G ++  LGIEV++    D I +SQ SY  E+LK    + C+ +S P E  +K++  E  +   +P    S++ S       R   + A   +S Y  S                    D G+ F   SN + L G+ D+DW  D+++++STTG+V+ +   A  W S+KQ +VT S+ EAEYVAA       ++LR LL  +G   +  T +  D KSAI ++K P  H R+KHI +R H IRE V    + ++YV++ DQ+AD+ T+ L+   F RLRNLL
Sbjct: 1044 LPKGHKAIGVKWVYKTKQNAKGEIERHKARLVAKGYSQKAGIDYDEVFAPVARLETIRLIISLAAQNKWKIQQMDVKSAFLNGVLEEELYIQQPSGYEVKGHEDKVLKLKKALYGLKQAPRAWNSRIDNNPSMFNEFKDVMMKEFEMTDMGLMAYYLGIEVKQQN--DGIFISQESYAKEILKKFKMENCKPISTPAEYGIKMTKHEEGES-VDPTFFKSLVGSLRYLTCTRPDILHAVGLVSRYMESPTTTHFKAAKRILRYLKGTIDFGL-FYSVSNDYKLVGYSDSDWGGDIDNRRSTTGFVFFMGDIAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKEIGLIQEEPTKVCVDNKSAIALAKNPVFHDRSKHIDIRYHYIRECVARKDVEVEYVKSQDQVADIFTKPLTSEDFLRLRNLL 1471          
BLAST of mRNA_H-paniculata_contig12885.1810.1 vs. uniprot
Match: A0A2N9HW07_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HW07_FAGSY)

HSP 1 Score: 200 bits (509), Expect = 1.550e-53
Identity = 128/400 (32.00%), Postives = 212/400 (53.00%), Query Frame = 1
Query:    1 LPAGRKAICAKWIFKRR---LKEDGSVARYQARLVAQGVSQVEGEDFF*INAPVARISTLSTVFSLDAEFNFELEGMDVDAGYLNTPVEEEPFVNLSPEF-------------------------------SPFSRDIPFRDLGSLSRALGIEVRRDRPKDTIAMSQGSYICEVLKICGFDECRGVSIPVEGKVKISGPEWADKPSEPQSLGSVLTSYGGPMSGRLQYMQAHLSLSHYCVSDLGITFGDKSNG-HGLEGFIDADWAEDVEDQKSTTGYVYKLNGGAIIWCSRKQQLVTWSSTEAEYVAAGEPGNETVYLRELLGSMGFGCKGSTTLFEDKKSAINVSKEPSAHCRTKHIGVR*HGIREWVWVGVLALQYVQTGDQLADVLTQGLSRVKFR 1095
            LP G+K I  KW+FK++    +++G   R++ARLVA+G SQ  G D+  + +PV R +++  V +L A+ + ELE +DV   +L+  +EEE F+     F                               S   ++   +DLG+  + LG+E+ RDR    + +SQ +YI +VL+     + + VS P+    ++SG +      E +++  V   +G P    L+  +    +         + F  K+ G + + G++DAD+A +V+D++STTGYV+ L+GG I W S  Q +V  S+TEAEY+A  E   E ++L+ L+  +G   +G   +  D +SAI ++K    H RTKHI VR H IRE +  G + L+ V T +  AD+LT+ ++  KF+
Sbjct:  651 LPKGKKPIGCKWVFKKKEAVSEKEGE--RFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQPGTENLVCRLKKSLYGLKQSPRQWYKRLKSLLHKEFEMKDLGAAKKILGMEIHRDRGARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFRLSGSQCPKNEEEIENMSKV---HGEPRERALECSEVDFQILERHCGTWDLIF--KTAGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPVTTAKFK 1042          
BLAST of mRNA_H-paniculata_contig12885.1810.1 vs. uniprot
Match: A0A2N9ER08_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9ER08_FAGSY)

HSP 1 Score: 199 bits (505), Expect = 6.090e-53
Identity = 133/425 (31.29%), Postives = 218/425 (51.29%), Query Frame = 1
Query:    1 LPAGRKAICAKWIFKRR---LKEDGSVARYQARLVAQGVSQVEGEDFF*INAPVARISTLSTVFSLDAEFNFELEGMDVDAGYLNTPVEEEPFVNLSPEF-------------------------------SPFSRDIPFRDLGSLSRALGIEVRRDRPKDTIAMSQGSYICEVLKICGFDECRGVSIPVEGKVKISGPEWADKPSEPQSLGSV--LTSYGGPMSG----RLQYMQAHLSLSHYCVS--------------------DLGITFGDKSNGHGLEGFIDADWAEDVEDQKSTTGYVYKLNGGAIIWCSRKQQLVTWSSTEAEYVAAGEPGNETVYLRELLGSMGFGCKGSTTLFEDKKSAINVSKEPSAHCRTKHIGVR*HGIREWVWVGVLALQYVQTGDQLADVLTQGLSRVKFR 1095
            LP G+K I  KW+FK++    +++G   R++ARLVA+G SQ  G D+  + +PV R +++  V +L A+ + ELE +DV   +L+  +EEE F+     F                               S   ++   +DLG+  + LG+E+RRDR    + +SQ +YI +VL+     + + VS P+    ++SG +      E +++  V   ++ G  M      RL    A  ++S Y  +                    + GI F  +   + + G++DAD+A +V+D++STTGYV+ L+GG I W S  Q +V  S+TEAEY+A  E   E ++L+ L+  +G   +G   +  D +SAI ++K    H RTKHI VR H IRE +  G + L+ V T +  AD+LT+ ++  KF+
Sbjct:  699 LPKGKKPIGCKWVFKKKEAVSEKEGE--RFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQPGTENLVCRLKKSLYGLKQSPRQWYKRLKSLLHKEFEMKDLGAAKKILGMEIRRDRGARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRLDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPVTTAKFK 1120          
BLAST of mRNA_H-paniculata_contig12885.1810.1 vs. uniprot
Match: A0A6A2YP16_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YP16_HIBSY)

HSP 1 Score: 197 bits (501), Expect = 2.190e-52
Identity = 139/422 (32.94%), Postives = 215/422 (50.95%), Query Frame = 1
Query:    1 LPAGRKAICAKWIFKRRLKEDGSVARYQARLVAQGVSQVEGEDFF*INAPVARISTLSTVFSLDAEFNFELEGMDVDAGYLNTPVEEEPFVNLSPEFSPFSR-------------------------DIPFRD------LGSLSRALGIEVRRDRPKDTIAMSQGSYICEVLKICGFDECRGVSIPVEGKVKISGPEWADKPSEPQSLGSVLTSYGGPMSGRLQYMQAHLSLSHYCVS--------------------DLGITFGDKSNGHGLEGFIDADWAEDVEDQKSTTGYVYKLNGGAIIWCSRKQQLVTWSSTEAEYVAAGEPGNETVYLRELLGSMGFGCKGSTTLFEDKKSAINVSKEPSAHCRTKHIGVR*HGIREWVWVGVLALQYVQTGDQLADVLTQGLSRVKFRRLRNLL 1113
            LP G KAI  KW++K +    G + R++ARLVA+G SQ    D+  + APVAR+ T+  + SL A+  ++++ MDV + +LN  +EEE ++   P +                              D  F++      +G ++  LGIEV++    D I +SQ SY  E+LK    + C+ +S P E  +K++  E  +   +P    S++ S       R   + A   +S Y  S                    D G+ F   SN + L G+ D DW  D+++++STTG+V+ +   A  W S+KQ +VT S+ EAEYVAA       ++LR LL  +G   +  T +  D KSAI ++K P  H R+KHI +R H IRE V    + ++YV++ DQ+AD+ T+ L+   F RLRNLL
Sbjct:  761 LPKGHKAIGVKWVYKTKQNAKGEIERHKARLVAKGYSQKAEIDYDEVCAPVARLETIRLIISLAAQNKWKIQQMDVKSAFLNGVLEEELYIQQPPGYEVKGHEDKVLKLKKALYGLKQAPRAWNSRIDKYFQENGFNKYMGLMAYYLGIEVKQQN--DGIFISQESYAKEILKKFKMENCKPISTPAEYGIKMTKHEEGES-VDPTFFKSLVGSLRYLTCTRPDILHAVGLVSRYMESPTTTHFKAAKRILRYLKGTIDFGL-FYSVSNDYKLVGYSDNDWGGDIDNRRSTTGFVFFMGDIAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKEIGLIQEEPTKVCVDNKSAIALAKNPVFHDRSKHIDIRYHYIRECVARKDVEVEYVKSQDQVADIFTKPLTSEDFLRLRNLL 1178          
BLAST of mRNA_H-paniculata_contig12885.1810.1 vs. uniprot
Match: A0A2N9GG47_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GG47_FAGSY)

HSP 1 Score: 196 bits (499), Expect = 3.320e-52
Identity = 124/391 (31.71%), Postives = 209/391 (53.45%), Query Frame = 1
Query:    1 LPAGRKAICAKWIFKRR---LKEDGSVARYQARLVAQGVSQVEGEDFF*INAPVARISTLSTVFSLDAEFNFELEGMDVDAGYLNTPVEEEPFVNLSPEF-----------------------SPFSRDIPFRDLGSLSRALGIEVRRDRPKDTIAMSQGSYICEVLKICGFDECRGVSIPVEGKVKISGPEWADKPSEPQSLGSVLTSYGGPMSGRLQYMQAHLSLSHYCVSDLGITFGDKSNGHGLEGFIDADWAEDVEDQKSTTGYVYKLNGGAIIWCSRKQQLVTWSSTEAEYVAAGEPGNETVYLRELLGSMGFGCKGSTTLFEDKKSAINVSKEPSAHCRTKHIGVR*HGIREWVWVGVLALQYVQTGDQLADVLTQGLSRVKFR 1095
            LP G+K I  KW+FK++    +++G   R++ARLVA+G SQ  G D+  + +PV R +++  V +L A+ + ELE +DV   +L+  +EEE F+     F                       S   ++   +DLG+  + LGIE+RRDR    + +SQ +YI +VL+       + VS P+    ++SG +      E +++  V      P +  +  +   +  +   ++    T   +   + + G++DAD+A +V+D++STTGYV+ L+GG I W S  Q +V  S+ EAEY+A  +   E ++L+ L+  +G   +G   +  D +SAI ++K    H RTKHI VR H IRE +  G + L+ V T +  AD+LT+ ++  KF+
Sbjct:  645 LPKGKKPIGCKWVFKKKEAVSEKEGE--RFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMVQPEGFKQPGTKNLVCRLKKSLYGLKQLKSLLHKEFEMKDLGAAKKILGIEIRRDREARKLWLSQKNYIRKVLEKFSMLNAKPVSTPLANHFRLSGSQCLKNEEEIENMSKV------PYASAVGCLMYAMVCTRPDLAHAVSTVSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTIEAEYMAVAKAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTLENAADMLTKPVTTTKFK 1026          
BLAST of mRNA_H-paniculata_contig12885.1810.1 vs. uniprot
Match: A0A438H6F6_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H6F6_VITVI)

HSP 1 Score: 189 bits (481), Expect = 4.110e-52
Identity = 125/370 (33.78%), Postives = 201/370 (54.32%), Query Frame = 1
Query:   16 KAICAKWIFKRRLKEDGSVARYQARLVAQGVSQVEGEDFF*INAPVARISTLSTVFSLDAEFNFELEGMDVDAGYLNTPVEEEPFVNLSPEFSPFSRDIPFRDLGSLSRALGIEVRRDRPKDTIAMSQGSYICEVLKICGFDECRGVSIPVEGKVKIS---GPEWADKPSEPQSLGSVLTSYGGPMSGRLQYMQAHLSLSHYCVSDLGIT-FGDKSNGHGLEGFIDADWAEDVEDQKSTTGYVYKLNGGAIIWCSRKQQLVTWSSTEAEYVAAGEPGNETVYLRELLGSMGFGCKGSTTLFEDKKSAINVSKEPSAHCRTKHIGVR*HGIREWVWVGVLALQYVQTGDQLADVLTQGLSRVKFRRLRNLL 1113
            K+I  KW++K +L +DG V +Y+ARLVA+G  Q  G D+  + APVA++ T+  V S+ A+ ++ +  +DV + +L+  +EEE +++  P +                   G E +  +    + +SQ  Y  E+L      +C  +  P E  +K+S     +  D     Q +GS++       S R   M A   +S Y  +   ++ FG K N    E    +D+A D++D+KST+G V+ LN GAI W S+KQQ+VT S+TEAE+VAA     + ++LR LL  +    +G T ++ D  SAI +SK    H R+KHI VR H +R+    GV+ L + ++ DQ+AD+LT+ L    F +LR++L
Sbjct:  127 KSIGVKWVYKTKLNKDGGVDKYKARLVAKGYKQEFGVDYKEVFAPVAKLDTIRLVLSMAAQNSWSIHQLDVKSAFLHGELEEEVYIDQPPGYVK----------------QGYENQVVQSSAGVFISQNKYALEILDKFMLKDCNSIITPSEVGLKLSKSGAGKMVDSTLYKQIVGSLMYL----TSTRPDIMHAVNLISRYMENPTEVSDFGCKKNFSLFE----SDYAGDLDDRKSTSGAVFMLNYGAIAWSSKKQQIVTLSTTEAEFVAAASSSCQAIWLRRLLEVLYNQQQGPTVIYCDNLSAIKLSKNLVLHGRSKHIAVRYHFLRDLCKDGVIDLVFCKSEDQIADILTKPLKPAVFMKLRSML 472          
BLAST of mRNA_H-paniculata_contig12885.1810.1 vs. uniprot
Match: A0A2N9EYD8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EYD8_FAGSY)

HSP 1 Score: 196 bits (498), Expect = 6.610e-52
Identity = 124/399 (31.08%), Postives = 211/399 (52.88%), Query Frame = 1
Query:    1 LPAGRKAICAKWIFKRR---LKEDGSVARYQARLVAQGVSQVEGEDFF*INAPVARISTLSTVFSLDAEFNFELEGMDVDAGYLNTPVEEEPFVNLSPEF---------------------SP----------FSRDIPFRDLGSLSRALGIEVRRDRPKDTIAMSQGSYICEVLKICGFDECRGVSIPVEGKVKISGPEWADKPSEPQSLGSVLTSYGGPMSGRLQYMQAHLSLSHYCVSDLGITFGDKSNGHGLEGFIDADWAEDVEDQKSTTGYVYKLNGGAIIWCSRKQQLVTWSSTEAEYVAAGEPGNETVYLRELLGSMGFGCKGSTTLFEDKKSAINVSKEPSAHCRTKHIGVR*HGIREWVWVGVLALQYVQTGDQLADVLTQGLSRVKFR 1095
            LP G+K I  KW+FK++    +++G   R++ARLVA+G SQ  G D+  + +PV R +++  V +L A+ + ELE +DV   +L+  +EEE F+     F                     SP            ++   +DLG+  + LG+E+RRDR    + +SQ +YI +VL+     + + VS P+    ++SG +      E +++  V      P +  +  +   +  +   ++    T   +   + + G++DAD+A++V+D++STTGYV+ L+GG   W S  Q +V  S+TEAEY+A  E   E ++L+ L+  +G   +G   +  D +SAI ++K    H RTKHI VR H IRE +  G + L+ V T +   D+LT+ ++  KF+
Sbjct:  799 LPKGKKPIGCKWVFKKKEAVSEKEGE--RFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMVQPEGFKQPGTENLVCRLKKSLYGLKQSPRQWYKRLKSFLHKEFEMKDLGAAKKILGMEIRRDRETRKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFRLSGSQCPKNEEEIENMSKV------PYASAVGCLMYAMVCTRPDLAHAVSTVSRQPGTNSVVGYVDADYADEVDDRRSTTGYVFTLSGGPTCWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAVDMLTKPVTTAKFK 1188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12885.1810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9GWV7_FAGSY9.480e-5634.10Integrase catalytic domain-containing protein n=3 ... [more]
A0A5N5G876_9ROSA2.790e-5534.60Uncharacterized protein n=1 Tax=Pyrus ussuriensis ... [more]
A0A6A2YJM7_HIBSY7.670e-5432.64Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A6A3CBK1_HIBSY8.210e-5432.64Protein indeterminate-domain 6 n=1 Tax=Hibiscus sy... [more]
A0A2N9HW07_FAGSY1.550e-5332.00Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9ER08_FAGSY6.090e-5331.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A2YP16_HIBSY2.190e-5232.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9GG47_FAGSY3.320e-5231.71Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A438H6F6_VITVI4.110e-5233.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9EYD8_FAGSY6.610e-5231.08Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12885contigH-paniculata_contig12885:3641..5147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue8.1e-28
Seed eggNOG ortholog164328.Phyra71619
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1113
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12885.1810.1prot_H-paniculata_contig12885.1810.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12885 3860..5018 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929014.6204698-UTR-H-paniculata_contig12885:3640..38591622929014.6204698-UTR-H-paniculata_contig12885:3640..3859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12885 3641..3859 +
1691480699.5761359-UTR-H-paniculata_contig12885:3640..38591691480699.5761359-UTR-H-paniculata_contig12885:3640..3859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12885 3641..3859 +
1622929014.6774497-UTR-H-paniculata_contig12885:5018..51471622929014.6774497-UTR-H-paniculata_contig12885:5018..5147Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12885 5019..5147 +
1691480699.6143262-UTR-H-paniculata_contig12885:5018..51471691480699.6143262-UTR-H-paniculata_contig12885:5018..5147Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12885 5019..5147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929014.6351075-CDS-H-paniculata_contig12885:3859..39581622929014.6351075-CDS-H-paniculata_contig12885:3859..3958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12885 3860..3958 +
1691480699.589824-CDS-H-paniculata_contig12885:3859..39581691480699.589824-CDS-H-paniculata_contig12885:3859..3958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12885 3860..3958 +
1622929014.647175-CDS-H-paniculata_contig12885:4211..44351622929014.647175-CDS-H-paniculata_contig12885:4211..4435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12885 4212..4435 +
1691480699.5991547-CDS-H-paniculata_contig12885:4211..44351691480699.5991547-CDS-H-paniculata_contig12885:4211..4435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12885 4212..4435 +
1622929014.6601312-CDS-H-paniculata_contig12885:4576..50181622929014.6601312-CDS-H-paniculata_contig12885:4576..5018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12885 4577..5018 +
1691480699.6065733-CDS-H-paniculata_contig12885:4576..50181691480699.6065733-CDS-H-paniculata_contig12885:4576..5018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12885 4577..5018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12885.1810.1

>prot_H-paniculata_contig12885.1810.1 ID=prot_H-paniculata_contig12885.1810.1|Name=mRNA_H-paniculata_contig12885.1810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=255bp
MDVDAGYLNTPVEEEPFVNLSPEFSPFSRDIPFRDLGSLSRALGIEVRRD
RPKDTIAMSQGSYICEVLKICGFDECRGVSIPVEGKVKISGPEWADKPSE
PQSLGSVLTSYGGPMSGRLQYMQAHLSLSHYCVSDLGITFGDKSNGHGLE
GFIDADWAEDVEDQKSTTGYVYKLNGGAIIWCSRKQQLVTWSSTEAEYVA
AGEPGNETVYLRELLGSMGFGCKGSTTLFEDKKSAINVSKEPSAHCRTKH
IGVR*
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mRNA from alignment at H-paniculata_contig12885:3641..5147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12885.1810.1 ID=mRNA_H-paniculata_contig12885.1810.1|Name=mRNA_H-paniculata_contig12885.1810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1507bp|location=Sequence derived from alignment at H-paniculata_contig12885:3641..5147+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACCGGCAGGGCGGAAGGCGATTTGCGCGAAATGGATTTTCAAGCGGAG ACTGAAGGAGGACGGCAGCGTGGCACGCTACCAAGCGCGATTAGTGGCTC AAGGTGTTTCACAGGTGGAGGGTGAAGATTTCTTTTAAATCAATGCCCCC GTAGCTCGCATATCGACGTTATCTACTGTTTTTAGCCTGGACGCCGAATT TAATTTCGAATTAGAAGGCATGGACGTAGATGCGGGGTATTTGAACACCC CGGTAGAAGAAGAGCCATTTGTTAACCTATCCCCCGAGTTCTCCCCTTTC TCCCGAGATATACCGTTTGTGCGCCGCCTTCGTAAAAGCCTGTACGGCCT CAAGCAGAGCGACCGTAACAGGAATAACACTCTTGACGATGTTCTTGTTG GGATAGGACTCCACCCTTCCACCACGGACTCATGTTTGTAGGTTTCTCGC GACGATGGGGGAAGAGACAAACCTTCTGGTGGCCGTCATGTTGACGACCT GGTCATTGCTGGCCATCGTGAGAAAGTAGACGAGTTCAAGCATAACATAA GTCAGCGTATTAGGATGAGAGAGAGACTTGGGCTCACTCTCGCGCGCGTT GGGAATAGAAGTACGACGTGACCGCCCTAAGGATACTATAGCCATGTCTC AGGGTAGCTACATCTGCGAGGTACTAAAAATATGCGGTTTTGACGAATGT CGAGGGGTATCCATCCCTGTAGAGGGAAAAGTGAAGATTTCGGGACCCGA GTGGGCCGATAAGCCCTCCGAACCGCAGTCACTTGGCTCTGTACTGTCAA ACATAGGTGCAGGAGTACAAGAAAGCAGCAGAGGGAGAAGCGGTAATTCA ACTGAATACAGGGGCATGGTAGGATGACTCATGTACGCCTCGACAGAAAA CTAGACCTGATATAGACTATGTGGTACACCAAGCAGCACGTCGTATGGAG GACCCATGTCAGGAAGACTTCAGTATATGCAAGCGCATCTTTCGTTATCT CATTACTGTGTGTCTGACCTCGGCATTACGTTCGGGGATAAGAGTAATGG TCACGGTCTGGAAGGATTCATTGATGCCGATTGGGCGGAAGATGTTGAGG ACCAAAAGTCTACAACAGGATACGTATATAAACTAAACGGCGGTGCGATA ATTTGGTGCTCCAGGAAGCAACAGTTAGTCACCTGGTCCAGTACAGAGGC AGAGTACGTTGCTGCAGGAGAACCGGGAAACGAGACAGTATATCTGAGGG AGTTGCTAGGATCGATGGGTTTCGGATGCAAGGGGAGCACGACATTGTTT GAGGACAAAAAATCAGCCATCAATGTCAGTAAGGAACCTAGCGCACACTG CAGGACGAAGCACATCGGAGTGCGCTGACATGGAATTCGAGAGTGGGTTT GGGTAGGAGTATTGGCGTTGCAATACGTGCAGACTGGCGACCAACTTGCT GACGTTTTAACCCAAGGACTAAGCAGAGTAAAGTTTCGGAGACTGAGAAA TTTACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig12885:3641..5147+

>mRNA_H-paniculata_contig12885.1810.1 ID=mRNA_H-paniculata_contig12885.1810.1|Name=mRNA_H-paniculata_contig12885.1810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at H-paniculata_contig12885:3641..5147+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGTAGATGCGGGGTATTTGAACACCCCGGTAGAAGAAGAGCCATT
TGTTAACCTATCCCCCGAGTTCTCCCCTTTCTCCCGAGATATACCGTTTA
TGGACGTAGATGCGGGGTATTTGAACACCCCGGTAGAAGAAGAGCCATTT
GTTAACCTATCCCCCGAGTTCTCCCCTTTCTCCCGAGATATACCGTTTAG
AGACTTGGGCTCACTCTCGCGCGCGTTGGGAATAGAAGTACGACGTGACC
GCCCTAAGGATACTATAGCCATGTCTCAGGGTAGCTACATCTGCGAGGTA
CTAAAAATATGCGGTTTTGACGAATGTCGAGGGGTATCCATCCCTGTAGA
GGGAAAAGTGAAGATTTCGGGACCCGAGTGGGCCGATAAGCCCTCCGAAC
CGCAGTCACTTGGCTCTGTACTAGAGACTTGGGCTCACTCTCGCGCGCGT
TGGGAATAGAAGTACGACGTGACCGCCCTAAGGATACTATAGCCATGTCT
CAGGGTAGCTACATCTGCGAGGTACTAAAAATATGCGGTTTTGACGAATG
TCGAGGGGTATCCATCCCTGTAGAGGGAAAAGTGAAGATTTCGGGACCCG
AGTGGGCCGATAAGCCCTCCGAACCGCAGTCACTTGGCTCTGTACTCACG
TCGTATGGAGGACCCATGTCAGGAAGACTTCAGTATATGCAAGCGCATCT
TTCGTTATCTCATTACTGTGTGTCTGACCTCGGCATTACGTTCGGGGATA
AGAGTAATGGTCACGGTCTGGAAGGATTCATTGATGCCGATTGGGCGGAA
GATGTTGAGGACCAAAAGTCTACAACAGGATACGTATATAAACTAAACGG
CGGTGCGATAATTTGGTGCTCCAGGAAGCAACAGTTAGTCACCTGGTCCA
GTACAGAGGCAGAGTACGTTGCTGCAGGAGAACCGGGAAACGAGACAGTA
TATCTGAGGGAGTTGCTAGGATCGATGGGTTTCGGATGCAAGGGGAGCAC
GACATTGTTTGAGGACAAAAAATCAGCCATCAATGTCAGTAAGGAACCTA
GCGCACACTGCAGGACGAAGCACATCGGAGTGCGCTGACACGTCGTATGG
AGGACCCATGTCAGGAAGACTTCAGTATATGCAAGCGCATCTTTCGTTAT
CTCATTACTGTGTGTCTGACCTCGGCATTACGTTCGGGGATAAGAGTAAT
GGTCACGGTCTGGAAGGATTCATTGATGCCGATTGGGCGGAAGATGTTGA
GGACCAAAAGTCTACAACAGGATACGTATATAAACTAAACGGCGGTGCGA
TAATTTGGTGCTCCAGGAAGCAACAGTTAGTCACCTGGTCCAGTACAGAG
GCAGAGTACGTTGCTGCAGGAGAACCGGGAAACGAGACAGTATATCTGAG
GGAGTTGCTAGGATCGATGGGTTTCGGATGCAAGGGGAGCACGACATTGT
TTGAGGACAAAAAATCAGCCATCAATGTCAGTAAGGAACCTAGCGCACAC
TGCAGGACGAAGCACATCGGAGTGCGCTGA
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