mRNA_H-paniculata_contig1287.1802.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1287.1802.1
Unique NamemRNA_H-paniculata_contig1287.1802.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1287.1802.1 vs. uniprot
Match: A0A6H5LDS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDS7_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.370e-60
Identity = 101/146 (69.18%), Postives = 119/146 (81.51%), Query Frame = 1 
Query:    1 EEQRNAGPVLALVETLKELSKIKVLDLSECTLIGLSRHRYKGLNGLGDVFRERKNRLTHLRLCDNRLHSEAALIVAGWLPAVSKLRYLDISSRAGFDPLCGALRTTLHLRTLRMEKCGLDDGEAEGVAAFLASSVRLERLDLSGNQ 438
            EEQR  GP++AL +TL  LS++KVLDLS CTLIGLS +RY GLN LG+     K +LTHLR+  NRLHSEAALIV GWLP++ KLRYLD+SSR+GFDPLCGA RT+LHLRTL +   G+DD EAEGVA+FLA SVRLE+LDLS NQ
Sbjct:   91 EEQRYVGPLVALADTLTSLSRLKVLDLSNCTLIGLSGNRYHGLNALGNTLASGK-KLTHLRISGNRLHSEAALIVGGWLPSLPKLRYLDLSSRSGFDPLCGAFRTSLHLRTLLLRDVGMDDLEAEGVASFLALSVRLEKLDLSENQ 235
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BLAST of mRNA_H-paniculata_contig1287.1802.1 vs. uniprot
Match: D8LSY1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY1_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 7.770e-59
Identity = 98/145 (67.59%), Postives = 117/145 (80.69%), Query Frame = 1 
Query:    4 EQRNAGPVLALVETLKELSKIKVLDLSECTLIGLSRHRYKGLNGLGDVFRERKNRLTHLRLCDNRLHSEAALIVAGWLPAVSKLRYLDISSRAGFDPLCGALRTTLHLRTLRMEKCGLDDGEAEGVAAFLASSVRLERLDLSGNQ 438
            EQR  GP++AL +TL  LS++KVLDLS CTLIGL+ +RY GLN LG+ F   K +LTHLR+  N LHSEAALIV GWLP++ KLRYLD+SSR+GFD LCGA RT+LHLRTL +   G+DDGEAEGVA+FLA S RLE+LDLS NQ
Sbjct:   26 EQRYVGPLVALADTLTSLSRLKVLDLSNCTLIGLAGNRYHGLNALGNTFASGK-KLTHLRISGNSLHSEAALIVGGWLPSLPKLRYLDLSSRSGFDSLCGAFRTSLHLRTLLLRDVGMDDGEAEGVASFLALSARLEKLDLSDNQ 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1287.1802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDS7_9PHAE1.370e-6069.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSY1_ECTSI7.770e-5967.59Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1287contigH-paniculata_contig1287:26201..27402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size438
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1287.1802.1prot_H-paniculata_contig1287.1802.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1287 26201..27402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929013.6605191-CDS-H-paniculata_contig1287:26200..263821622929013.6605191-CDS-H-paniculata_contig1287:26200..26382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1287 26201..26382 +
1691480699.1729066-CDS-H-paniculata_contig1287:26200..263821691480699.1729066-CDS-H-paniculata_contig1287:26200..26382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1287 26201..26382 +
1622929013.6747544-CDS-H-paniculata_contig1287:26725..268181622929013.6747544-CDS-H-paniculata_contig1287:26725..26818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1287 26726..26818 +
1691480699.1820893-CDS-H-paniculata_contig1287:26725..268181691480699.1820893-CDS-H-paniculata_contig1287:26725..26818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1287 26726..26818 +
1622929013.6869109-CDS-H-paniculata_contig1287:27239..274021622929013.6869109-CDS-H-paniculata_contig1287:27239..27402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1287 27240..27402 +
1691480699.1899266-CDS-H-paniculata_contig1287:27239..274021691480699.1899266-CDS-H-paniculata_contig1287:27239..27402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1287 27240..27402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1287.1802.1

>prot_H-paniculata_contig1287.1802.1 ID=prot_H-paniculata_contig1287.1802.1|Name=mRNA_H-paniculata_contig1287.1802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
EEQRNAGPVLALVETLKELSKIKVLDLSECTLIGLSRHRYKGLNGLGDVF
RERKNRLTHLRLCDNRLHSEAALIVAGWLPAVSKLRYLDISSRAGFDPLC
GALRTTLHLRTLRMEKCGLDDGEAEGVAAFLASSVRLERLDLSGNQ
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mRNA from alignment at H-paniculata_contig1287:26201..27402+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1287.1802.1 ID=mRNA_H-paniculata_contig1287.1802.1|Name=mRNA_H-paniculata_contig1287.1802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1202bp|location=Sequence derived from alignment at H-paniculata_contig1287:26201..27402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGCAACGAAATGCCGGACCCGTGCTGGCGTTGGTGGAGACGCTGAA
GGAATTGTCGAAAATCAAGGTCTTGGATCTCTCAGAGTGCACCCTTATCG
GGCTTTCCAGGCATCGGTACAAGGGGCTCAATGGTCTGGGAGATGTCTTC
CGTGAAAGAAAGAATCGATTGACGCACCTCAGGTGTGCACAAGGCGCCGA
TACCGGTATTGAGGGGACGTCAAAACGAACCACGGACAACAGCTGAAACC
GTAGTGTACTTCGCCGTCTCGTCTAGAAAAGTTGAACCTTTTTCGTTTTG
CAATAGCATTGCGAAATATAGCTCTATACCCACAACAACAGAATGTCAAA
TATAGTGTCTGAAACAAAACGCGATGTTTGGTTTTCGTCGAAACATAAGT
GAACACTTTACGTGTATTAAGTTACTGCGAGCAGGACAAGAGTATTGGTG
ACGGTTGCAGTTCCCGACTTGACCAACGCAAAGAGACAACAAATCGTCCA
CACACCTACGTTAAAATGCTGTCAGGCTCTGTGATAATAGGTTGCATAGC
GAGGCGGCTCTTATTGTGGCCGGGTGGTTGCCGGCGGTGTCCAAGCTTCG
ATATCTTGACATTTCAAGGTGGGGTTGGATGGGTGACAGGCACGGGTGCG
CTCACGCATGGTCAACGCCCGGATAGGGGGGAGAGGTGGGGGGAAACTAG
TGAAATGCTCCGCACACTCGTTGAATGGTGGCCAAGACGATTATGACGTT
ACTGTGATACACCGCTTTTATTGTATGACGCAATGAAATATTGCCAGCAA
GTACGAGTAACGTTACCACCCAGGCCATACCTACCCTCGAGTAAAATCAG
CGTTTCCCTGGGATATTTCCCCATATCGCGTGGGAATGCCCAGATGCAGA
AAGCTTGATGTGACCGTTCGATTTCATGATGAATGTGAACGCAGATGTCG
AAACCTTGGAACCAACCAATCCAATCGTTTGGGGGTATCCCCAAATCGGC
CAGGAATCCTCTAGCAGTTAACATCTTCGATCAACGAAGTAGGGCGGGTT
TCGATCCTCTTTGCGGCGCCCTGAGAACCACTCTGCACCTGAGAACGCTG
CGAATGGAAAAATGCGGATTAGACGACGGAGAAGCTGAGGGCGTTGCGGC
CTTTCTCGCGTCCTCGGTGCGGCTGGAACGCCTCGATTTGTCCGGGAACC
AG
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Coding sequence (CDS) from alignment at H-paniculata_contig1287:26201..27402+

>mRNA_H-paniculata_contig1287.1802.1 ID=mRNA_H-paniculata_contig1287.1802.1|Name=mRNA_H-paniculata_contig1287.1802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig1287:26201..27402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGCAACGAAATGCCGGACCCGTGCTGGCGTTGGTGGAGACGCTGAA
GGAATTGTCGAAAATCAAGGTCTTGGATCTCTCAGAGTGCACCCTTATCG
GGCTTTCCAGGCATCGGTACAAGGGGCTCAATGGTCTGGGAGATGTCTTC
CGTGAAAGAAAGAATCGATTGACGCACCTCAGGAAGAGCAACGAAATGCC
GGACCCGTGCTGGCGTTGGTGGAGACGCTGAAGGAATTGTCGAAAATCAA
GGTCTTGGATCTCTCAGAGTGCACCCTTATCGGGCTTTCCAGGCATCGGT
ACAAGGGGCTCAATGGTCTGGGAGATGTCTTCCGTGAAAGAAAGAATCGA
TTGACGCACCTCAGGCTCTGTGATAATAGGTTGCATAGCGAGGCGGCTCT
TATTGTGGCCGGGTGGTTGCCGGCGGTGTCCAAGCTTCGATATCTTGACA
TTTCAAGGCTCTGTGATAATAGGTTGCATAGCGAGGCGGCTCTTATTGTG
GCCGGGTGGTTGCCGGCGGTGTCCAAGCTTCGATATCTTGACATTTCAAG
TAGGGCGGGTTTCGATCCTCTTTGCGGCGCCCTGAGAACCACTCTGCACC
TGAGAACGCTGCGAATGGAAAAATGCGGATTAGACGACGGAGAAGCTGAG
GGCGTTGCGGCCTTTCTCGCGTCCTCGGTGCGGCTGGAACGCCTCGATTT
GTCCGGGAACCAGTAGGGCGGGTTTCGATCCTCTTTGCGGCGCCCTGAGA
ACCACTCTGCACCTGAGAACGCTGCGAATGGAAAAATGCGGATTAGACGA
CGGAGAAGCTGAGGGCGTTGCGGCCTTTCTCGCGTCCTCGGTGCGGCTGG
AACGCCTCGATTTGTCCGGGAACCAG
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