mRNA_H-paniculata_contig12869.1799.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12869.1799.1
Unique NamemRNA_H-paniculata_contig12869.1799.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12869.1799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12869contigH-paniculata_contig12869:5360..5812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size453
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.962841-CDS-H-paniculata_contig12869:5359..56621622929012.962841-CDS-H-paniculata_contig12869:5359..5662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12869 5360..5662 +
1691480698.9620569-CDS-H-paniculata_contig12869:5359..56621691480698.9620569-CDS-H-paniculata_contig12869:5359..5662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12869 5360..5662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.9769452-UTR-H-paniculata_contig12869:5662..58121622929012.9769452-UTR-H-paniculata_contig12869:5662..5812Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12869 5663..5812 +
1691480698.9718308-UTR-H-paniculata_contig12869:5662..58121691480698.9718308-UTR-H-paniculata_contig12869:5662..5812Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12869 5663..5812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12869.1799.1prot_H-paniculata_contig12869.1799.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12869 5360..5662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12869.1799.1

>prot_H-paniculata_contig12869.1799.1 ID=prot_H-paniculata_contig12869.1799.1|Name=mRNA_H-paniculata_contig12869.1799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
LRWRVIPRRLWCLGDSITPVGRDVCASLRFRPAFTICRNRVEDVSGKFLA
PTRLICSFRGKCRLPKLPKTINSDCGTLSLRNRSEALSPFRCLLSNPCQH
*
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mRNA from alignment at H-paniculata_contig12869:5360..5812+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12869.1799.1 ID=mRNA_H-paniculata_contig12869.1799.1|Name=mRNA_H-paniculata_contig12869.1799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=453bp|location=Sequence derived from alignment at H-paniculata_contig12869:5360..5812+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGCTGGCGCGTGATCCCACGCCGATTGTGGTGCCTCGGGGACTCGAT
AACCCCCGTCGGCCGAGACGTGTGCGCTTCGCTCCGCTTCCGACCTGCCT
TCACCATTTGCCGCAACCGCGTCGAGGACGTCAGCGGAAAGTTCCTTGCC
CCAACTCGCCTCATCTGTTCCTTCAGGGGCAAGTGCAGACTGCCCAAACT
CCCAAAAACGATCAACAGCGATTGCGGTACTCTCTCCTTGAGAAATCGCT
CAGAGGCTCTATCTCCCTTCAGATGTCTGTTGTCTAATCCGTGCCAGCAT
TAACAGTAATGTTGAACAGGCATTCTTGACCCTGGATGTCTTCCCTCAAC
ATGTAATCTGCCACGTTTATAATCGCCCCCTTCCCGGTCGTATCATCACG
TGCAGTTACGCGCCAGAGCACGGAGTGGAGGATCAACCTGTCCTGAGTCG
GCC
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Coding sequence (CDS) from alignment at H-paniculata_contig12869:5360..5812+

>mRNA_H-paniculata_contig12869.1799.1 ID=mRNA_H-paniculata_contig12869.1799.1|Name=mRNA_H-paniculata_contig12869.1799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig12869:5360..5812+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGCTGGCGCGTGATCCCACGCCGATTGTGGTGCCTCGGGGACTCGAT
AACCCCCGTCGGCCGAGACGTGTGCGCTTCGCTCCGCTTCCGACCTGCCT
TCACCATTTGCCGCAACCGCGTCGAGGACGTCAGCGGAAAGTTCCTTGCC
CCAACTCGCCTCATCTGTTCCTTCAGGGGCAAGTGCAGACTGCCCAAACT
CCCAAAAACGATCAACAGCGATTGCGGTACTCTCTCCTTGAGAAATCGCT
CAGAGGCTCTATCTCCCTTCAGATGTCTGTTGTCTAATCCGTGCCAGCAT
TAACTTCGCTGGCGCGTGATCCCACGCCGATTGTGGTGCCTCGGGGACTC
GATAACCCCCGTCGGCCGAGACGTGTGCGCTTCGCTCCGCTTCCGACCTG
CCTTCACCATTTGCCGCAACCGCGTCGAGGACGTCAGCGGAAAGTTCCTT
GCCCCAACTCGCCTCATCTGTTCCTTCAGGGGCAAGTGCAGACTGCCCAA
ACTCCCAAAAACGATCAACAGCGATTGCGGTACTCTCTCCTTGAGAAATC
GCTCAGAGGCTCTATCTCCCTTCAGATGTCTGTTGTCTAATCCGTGCCAG
CATTAA
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