mRNA_H-paniculata_contig12869.1798.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12869.1798.1
Unique NamemRNA_H-paniculata_contig12869.1798.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12869.1798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12869contigH-paniculata_contig12869:3027..3750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size724
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12869.1798.1prot_H-paniculata_contig12869.1798.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12869 3029..3463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.8865805-UTR-H-paniculata_contig12869:3026..30281622929012.8865805-UTR-H-paniculata_contig12869:3026..3028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12869 3027..3028 +
1691480698.938244-UTR-H-paniculata_contig12869:3026..30281691480698.938244-UTR-H-paniculata_contig12869:3026..3028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12869 3027..3028 +
1622929012.9131331-UTR-H-paniculata_contig12869:3463..37501622929012.9131331-UTR-H-paniculata_contig12869:3463..3750Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12869 3464..3750 +
1691480698.954514-UTR-H-paniculata_contig12869:3463..37501691480698.954514-UTR-H-paniculata_contig12869:3463..3750Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12869 3464..3750 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.8992531-CDS-H-paniculata_contig12869:3028..34631622929012.8992531-CDS-H-paniculata_contig12869:3028..3463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12869 3029..3463 +
1691480698.9466836-CDS-H-paniculata_contig12869:3028..34631691480698.9466836-CDS-H-paniculata_contig12869:3028..3463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12869 3029..3463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12869.1798.1

>prot_H-paniculata_contig12869.1798.1 ID=prot_H-paniculata_contig12869.1798.1|Name=mRNA_H-paniculata_contig12869.1798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
MFLPPPLHPCCCSPLQEPSCTMPWHAGRVSHHRLILLPPPLYRRLSWVSL
LLQTTARVAAVALHPQPLYIPSSLRPQNAWFQPLPPASARAAAFVPHQRR
LCLPPVIGRSLSPALHLRFARLPQPAVATERQFVRDPHSADPTC*
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mRNA from alignment at H-paniculata_contig12869:3027..3750+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12869.1798.1 ID=mRNA_H-paniculata_contig12869.1798.1|Name=mRNA_H-paniculata_contig12869.1798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=724bp|location=Sequence derived from alignment at H-paniculata_contig12869:3027..3750+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGATGTTCCTGCCACCGCCGCTCCACCCCTGCTGTTGTTCACCACTCCAA
GAGCCGTCCTGTACGATGCCGTGGCACGCCGGTCGAGTCTCCCACCACCG
ATTAATCCTCCTACCGCCACCACTCTACCGTCGACTTTCGTGGGTGTCAC
TACTGCTGCAGACGACTGCGCGCGTCGCTGCTGTGGCGCTCCATCCACAG
CCGCTCTACATCCCGTCGTCGCTCCGCCCCCAAAACGCTTGGTTCCAGCC
CCTGCCTCCCGCGAGTGCGCGCGCGGCCGCCTTCGTGCCCCACCAACGGC
GGCTCTGCTTGCCGCCGGTGATCGGCCGCAGCCTGTCGCCCGCTCTCCAC
CTGCGCTTCGCCCGACTCCCGCAGCCGGCGGTGGCAACTGAGCGCCAGTT
CGTGCGAGATCCGCACTCTGCGGATCCGACATGCTGACTCCGTAGAATAT
CACGGGCGGGCCACCGTTGCACTTGAACAGAGACGGGTGGTGTATTATAT
CGCGGCAGACGTCCGTAGCTACGTATTTCATTTCGCGCCTCTATCTTGTT
CGCACGCAGCCAGCTCTGGTCTAACCTGGTATCGCTGTCATGTAGCTTGT
CCATTCGCCCTTCTTGCTCGTGTGTCTTGATGCGAGGTACTGCCTCCGCA
ACGTCGTAGAAAATTAAAATCACCTAAGCGTCCTCCCACGCGCACTCTCC
CTCCACCTTCTCCACATAGCTGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig12869:3027..3750+

>mRNA_H-paniculata_contig12869.1798.1 ID=mRNA_H-paniculata_contig12869.1798.1|Name=mRNA_H-paniculata_contig12869.1798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig12869:3027..3750+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCTGCCACCGCCGCTCCACCCCTGCTGTTGTTCACCACTCCAAGA
GCCGTCCTGTACGATGCCGTGGCACGCCGGTCGAGTCTCCCACCACCGAT
TAATCCTCCTACCGCCACCACTCTACCGTCGACTTTCGTGGGTGTCACTA
CTGCTGCAGACGACTGCGCGCGTCGCTGCTGTGGCGCTCCATCCACAGCC
GCTCTACATCCCGTCGTCGCTCCGCCCCCAAAACGCTTGGTTCCAGCCCC
TGCCTCCCGCGAGTGCGCGCGCGGCCGCCTTCGTGCCCCACCAACGGCGG
CTCTGCTTGCCGCCGGTGATCGGCCGCAGCCTGTCGCCCGCTCTCCACCT
GCGCTTCGCCCGACTCCCGCAGCCGGCGGTGGCAACTGAGCGCCAGTTCG
TGCGAGATCCGCACTCTGCGGATCCGACATGCTGAATGTTCCTGCCACCG
CCGCTCCACCCCTGCTGTTGTTCACCACTCCAAGAGCCGTCCTGTACGAT
GCCGTGGCACGCCGGTCGAGTCTCCCACCACCGATTAATCCTCCTACCGC
CACCACTCTACCGTCGACTTTCGTGGGTGTCACTACTGCTGCAGACGACT
GCGCGCGTCGCTGCTGTGGCGCTCCATCCACAGCCGCTCTACATCCCGTC
GTCGCTCCGCCCCCAAAACGCTTGGTTCCAGCCCCTGCCTCCCGCGAGTG
CGCGCGCGGCCGCCTTCGTGCCCCACCAACGGCGGCTCTGCTTGCCGCCG
GTGATCGGCCGCAGCCTGTCGCCCGCTCTCCACCTGCGCTTCGCCCGACT
CCCGCAGCCGGCGGTGGCAACTGAGCGCCAGTTCGTGCGAGATCCGCACT
CTGCGGATCCGACATGCTGA
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