mRNA_H-paniculata_contig12869.1797.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12869.1797.1
Unique NamemRNA_H-paniculata_contig12869.1797.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12869.1797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12869contigH-paniculata_contig12869:1358..1963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size608
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.7832954-CDS-H-paniculata_contig12869:1357..16661622929012.7832954-CDS-H-paniculata_contig12869:1357..1666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12869 1358..1666 +
1691480698.9139123-CDS-H-paniculata_contig12869:1357..16661691480698.9139123-CDS-H-paniculata_contig12869:1357..1666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12869 1358..1666 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.8376384-UTR-H-paniculata_contig12869:1666..19631622929012.8376384-UTR-H-paniculata_contig12869:1666..1963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12869 1667..1963 +
1691480698.9290812-UTR-H-paniculata_contig12869:1666..19631691480698.9290812-UTR-H-paniculata_contig12869:1666..1963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12869 1667..1963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12869.1797.1prot_H-paniculata_contig12869.1797.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12869 1358..1666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12869.1797.1

>prot_H-paniculata_contig12869.1797.1 ID=prot_H-paniculata_contig12869.1797.1|Name=mRNA_H-paniculata_contig12869.1797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
SDTNCENRLKHVIKLRVPPPLADPIPNLPCQGCSTLTELLRAEVLRWTCG
DLHPPGLRYAPICPVFPPYPSALPAPVPLLPLHLLRVVQRRPCVVPHNNY
TV*
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mRNA from alignment at H-paniculata_contig12869:1358..1963+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12869.1797.1 ID=mRNA_H-paniculata_contig12869.1797.1|Name=mRNA_H-paniculata_contig12869.1797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=606bp|location=Sequence derived from alignment at H-paniculata_contig12869:1358..1963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGACACAAACTGCGAAAACCGCCTAAAGCATGTAATCAAACTCCGGGT
TCCTCCCCCTCTGGCCGATCCGATCCCGAACCTTCCGTGTCAGGGTTGCT
CGACTCTGACGGAGCTGCTCCGAGCCGAGGTACTTCGTTGGACATGTGGA
GATCTTCACCCCCCTGGGCTTCGTTATGCACCGATATGCCCCGTATTCCC
GCCGTATCCGTCTGCCCTGCCTGCCCCTGTGCCCCTTCTTCCCCTTCATC
TGCTACGAGTTGTTCAACGCCGGCCGTGCGTCGTCCCACACAATAACTAC
ACCGTTTGACCTTCTCTTCCACCTTCGTTGACCCAACCTCCCGACGACCC
CGCCGCTTCTGTGTCTGGGGGAATGTGACCCACTGGTGTTCCCCTTTGAC
CCTTCCCTTCCGTTGTGGAATCAGCCGGGGCCAGATAGCAGCGACCCCGG
CAACCGCAGCTTAGCGAGCATTTTCTGCGGCATCTGCGGCTTTTCCACTT
GTGTCCTTATCCATTGCCTTGACTGGGTCACAGTCGCAAGTGAGAGTTTT
GACCAAACTGTCCTGAACGACGACGTTTTCATGCCTAAGATGCACCGCTG
TCCCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig12869:1358..1963+

>mRNA_H-paniculata_contig12869.1797.1 ID=mRNA_H-paniculata_contig12869.1797.1|Name=mRNA_H-paniculata_contig12869.1797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig12869:1358..1963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGACACAAACTGCGAAAACCGCCTAAAGCATGTAATCAAACTCCGGGT
TCCTCCCCCTCTGGCCGATCCGATCCCGAACCTTCCGTGTCAGGGTTGCT
CGACTCTGACGGAGCTGCTCCGAGCCGAGGTACTTCGTTGGACATGTGGA
GATCTTCACCCCCCTGGGCTTCGTTATGCACCGATATGCCCCGTATTCCC
GCCGTATCCGTCTGCCCTGCCTGCCCCTGTGCCCCTTCTTCCCCTTCATC
TGCTACGAGTTGTTCAACGCCGGCCGTGCGTCGTCCCACACAATAACTAC
ACCGTTTGATCCGACACAAACTGCGAAAACCGCCTAAAGCATGTAATCAA
ACTCCGGGTTCCTCCCCCTCTGGCCGATCCGATCCCGAACCTTCCGTGTC
AGGGTTGCTCGACTCTGACGGAGCTGCTCCGAGCCGAGGTACTTCGTTGG
ACATGTGGAGATCTTCACCCCCCTGGGCTTCGTTATGCACCGATATGCCC
CGTATTCCCGCCGTATCCGTCTGCCCTGCCTGCCCCTGTGCCCCTTCTTC
CCCTTCATCTGCTACGAGTTGTTCAACGCCGGCCGTGCGTCGTCCCACAC
AATAACTACACCGTTTGA
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