mRNA_H-paniculata_contig1286.1792.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1286.1792.1
Unique NamemRNA_H-paniculata_contig1286.1792.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1286.1792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1286contigH-paniculata_contig1286:4298..7230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2293
Cds size2292
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.2812586-CDS-H-paniculata_contig1286:4297..44681622929012.2812586-CDS-H-paniculata_contig1286:4297..4468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1286 4298..4468 -
1691480698.7164767-CDS-H-paniculata_contig1286:4297..44681691480698.7164767-CDS-H-paniculata_contig1286:4297..4468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1286 4298..4468 -
1622929012.3291967-CDS-H-paniculata_contig1286:5109..72301622929012.3291967-CDS-H-paniculata_contig1286:5109..7230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1286 5110..7230 -
1691480698.729512-CDS-H-paniculata_contig1286:5109..72301691480698.729512-CDS-H-paniculata_contig1286:5109..7230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1286 5110..7230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1286.1792.1prot_H-paniculata_contig1286.1792.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1286 4298..7230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1286.1792.1

>prot_H-paniculata_contig1286.1792.1 ID=prot_H-paniculata_contig1286.1792.1|Name=mRNA_H-paniculata_contig1286.1792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=764bp
SQAKAGPEPNGGQRQATVDNQGSSNSESSDGYASFGSARGSGSGCSRTFK
RGRESCRDDYSWDCARPACPIPNQVAAGSGSECRRNDDSDPGRYLGETGG
GSCGDGRGTFCQEYNRKRGRDIFMCSSKGSSNNSSSEQGFPRPPTCRRNQ
DLGVDGAERALPSSEIHAAITHRDEGSSGGGKFCSTSRESRPGVVATAAA
AVTDRTSQLVEDSGLVEDVVREWFQELVGETSVVEGAGLLPPGDARHNGA
GGIKAAERATAAAAGQTASIIVDKSRAASTVPMSDRGRRGMGGVTNRDGG
DGSQLLPLAESVATQDTVEVSSVHPKPVLRVGDKVVRDVQDQSSLSLKIA
STATSALLSQPPSDQAHPNHRDLSTAISTADVVRSTSARKAASIMTTSPL
TVSEASPTGVLWLPAPSGHQTTEPRSVGGSTSTAALDPYFPLGSSLSADM
PAMIPIQALPSSSSERADERTRSLKVSKSPQQSMPAEVPVATRAAGQDEH
ADKVLRINHGLLGFDRAIEQPPPMLPPSADNESKNVLVEELIAVCTNPDR
GSGNEPMLREAEELEGVAANRSGKGDAATIDGGNAERLRYSAAPAAGSVA
VCGSEPVRRPSRPPITEFSRGNDSHRDQRARVGDSGGNSAQVCLPISIRA
DECDQSLTPLKAIVVPRGRSGGGGPGQSFPPRDLCTSLVAIGDARTPLLR
TCSPNLSVGSSCGSARRIESGALDTVSLVSHAGSSASASTRNVNGSGGGD
DGEESGNGDADNDG
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mRNA from alignment at H-paniculata_contig1286:4298..7230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1286.1792.1 ID=mRNA_H-paniculata_contig1286.1792.1|Name=mRNA_H-paniculata_contig1286.1792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2933bp|location=Sequence derived from alignment at H-paniculata_contig1286:4298..7230- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCAGGCAAAGGCAGGGCCAGAGCCTAACGGAGGTCAGAGACAAGCGAC
TGTCGACAACCAAGGCAGCAGCAACAGCGAAAGCAGTGACGGTTATGCAT
CCTTCGGAAGCGCGCGCGGCAGTGGTAGCGGCTGCAGTAGGACTTTCAAG
AGGGGACGGGAGTCATGTCGCGACGATTATTCGTGGGATTGCGCTCGACC
AGCTTGTCCCATCCCGAACCAAGTCGCGGCCGGATCGGGATCCGAATGCC
GACGGAATGATGATAGTGATCCGGGTAGATATTTGGGAGAGACAGGCGGG
GGGAGTTGTGGTGACGGACGCGGAACGTTTTGCCAGGAGTACAACCGTAA
ACGAGGTAGAGACATATTCATGTGCAGTAGTAAGGGTAGCAGCAACAACA
GCAGTAGCGAGCAAGGATTTCCAAGGCCGCCGACATGCCGCAGAAATCAA
GATCTGGGGGTAGACGGAGCGGAGAGGGCATTGCCAAGCTCCGAGATACA
CGCTGCCATCACACACCGTGATGAAGGTAGCAGCGGCGGTGGGAAATTCT
GCTCAACATCTCGGGAAAGTCGACCTGGCGTAGTAGCAACAGCAGCGGCG
GCCGTCACGGACCGTACTTCACAGCTTGTTGAGGACTCGGGGCTGGTTGA
AGACGTGGTTCGGGAGTGGTTCCAGGAACTGGTCGGAGAAACGAGTGTAG
TCGAAGGAGCGGGCTTGCTGCCTCCAGGAGATGCGCGACATAATGGAGCT
GGGGGAATTAAGGCAGCCGAGAGGGCGACCGCCGCCGCGGCTGGGCAGAC
TGCGTCAATAATAGTAGACAAGAGCAGAGCTGCGTCTACCGTGCCCATGT
CAGACAGAGGCAGGAGGGGTATGGGTGGTGTGACCAACAGGGATGGGGGT
GACGGCAGTCAGCTGTTGCCATTGGCGGAGAGTGTTGCAACGCAGGACAC
CGTGGAAGTGAGCAGCGTCCACCCTAAGCCGGTCCTCCGTGTTGGTGACA
AAGTTGTCCGAGACGTGCAAGACCAAAGCAGCCTATCCCTCAAAATAGCT
TCAACAGCAACATCGGCGTTGTTGTCCCAACCGCCGTCAGACCAGGCACA
CCCCAACCATCGGGACCTGTCGACTGCCATCAGCACGGCGGATGTAGTTC
GATCCACCTCTGCAAGAAAAGCGGCCTCGATCATGACTACGTCGCCGCTG
ACTGTGTCCGAAGCAAGTCCTACCGGAGTGCTGTGGTTGCCCGCACCATC
TGGTCACCAAACCACGGAACCGCGGAGCGTCGGTGGTAGTACGTCGACAG
CTGCACTTGACCCCTATTTCCCTCTAGGTTCTTCCTTGTCGGCCGATATG
CCAGCTATGATCCCGATCCAGGCCTTGCCATCATCGTCATCTGAACGTGC
GGACGAGAGGACGCGTTCACTCAAGGTGTCAAAATCTCCCCAACAATCAA
TGCCCGCAGAGGTCCCCGTCGCCACACGCGCAGCGGGCCAAGATGAACAT
GCGGACAAAGTACTGCGGATTAATCATGGACTACTCGGGTTTGACCGTGC
CATCGAGCAACCACCGCCGATGCTGCCGCCCTCAGCCGATAATGAATCGA
AGAACGTGTTGGTCGAAGAGCTGATCGCGGTATGCACAAACCCCGACAGA
GGATCGGGAAATGAGCCAATGCTACGAGAAGCGGAAGAATTGGAAGGTGT
TGCGGCAAACAGGTCTGGCAAGGGTGATGCTGCTACGATTGACGGTGGTA
ACGCAGAGCGCTTACGATATTCTGCTGCTCCAGCGGCAGGATCAGTTGCC
GTCTGTGGAAGCGAACCAGTCCGTCGGCCATCCCGTCCGCCCATCACTGA
ATTCTCACGGGGCAATGACTCACATCGTGACCAACGGGCGCGCGTCGGAG
ACTCGGGGGGAAATTCGGCGCAAGTGTGTCTACCAATCAGCATTCGGGCC
GACGAATGCGATCAATCGCTGACACCGCTGAAAGCGATAGTTGTGCCCCG
TGGTCGGAGTGGCGGCGGCGGCCCCGGGCAATCGTTCCCGCCGAGAGATC
TTTGTACTTCCCTTGTTGCGATAGGTGATGCCAGGACTCCTCTTCTACGG
ACCTGTTCTCCTAATCTCAGCGTGAGTTTTTTCAGCTTTCTGCGTTACTA
GCTGGGCGACCGATCGTCAGTGTTGGTAGGATGTACTGTGTAAAACAAAC
TGCGAAGCGCCGTACTGCAGCGTAATTTGTTTTTTCTTGACGCCACCACA
ACGTAACAGCCGCTTTTATGAAGTCAAATGTTTTTGATTTGTGATATACC
CCGTGTATTTTTGTACTCAATTTGAAATACCTGTTTATCATCGCTCTTTA
CCGGGAAGAACAGATGTATTATACACATATACATACTGTGTTGGTCGATG
AATGGATGTTTTTGTAATATGTAAAAAATAGTATTGGCATTTACAGTTGG
TCTTTTTTTACAATGGGGACCGGGTGTTGACTTGTCCGTGTCCATCGAAA
TGTAAACGGGTACGGTGACATGTTACGCGCGTGCTGAACTGTCGCGAGCG
CAGCGAAAACGTTTGGTGATGGGTTGGGTTAGTCGTAGATATGGATAAAT
TTACAAAACTATTGACAGGGCTGGCGTAGCCGTTTTGGAATATGCCTACT
ACTGTGGTATGTTCTAAATACTGGAATAAGGCCATGATGCTCTAAGAGGA
AGGTCGTCCCATCGTACCGACCTCCCCTGCATCTGCCCCATCCATGATTC
TCCGTAATACAGGTCGGCAGCAGCTGCGGGAGTGCGCGTCGAATCGAATC
CGGCGCTTTAGACACCGTGTCCCTGGTTTCGCATGCGGGAAGCAGCGCCT
CCGCCTCTACGAGAAACGTCAATGGTAGCGGTGGCGGTGATGATGGTGAG
GAAAGTGGCAACGGCGATGCCGACAACGATGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1286:4298..7230-

>mRNA_H-paniculata_contig1286.1792.1 ID=mRNA_H-paniculata_contig1286.1792.1|Name=mRNA_H-paniculata_contig1286.1792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4584bp|location=Sequence derived from alignment at H-paniculata_contig1286:4298..7230- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCAGGCAAAGGCAGGGCCAGAGCCTAACGGAGGTCAGAGACAAGCGAC
TGTCGACAACCAAGGCAGCAGCAACAGCGAAAGCAGTGACGGTTATGCAT
CCTTCGGAAGCGCGCGCGGCAGTGGTAGCGGCTGCAGTAGGACTTTCAAG
AGGGGACGGGAGTCATGTCGCGACGATTATTCGTGGGATTGCGCTCGACC
AGCTTGTCCCATCCCGAACCAAGTCGCGGCCGGATCGGGATCCGAATGCC
GACGGAATGATGATAGTGATCCGGGTAGATATTTGGGAGAGACAGGCGGG
GGGAGTTGTGGTGACGGACGCGGAACGTTTTGCCAGGAGTACAACCGTAA
ACGAGGTAGAGACATATTCATGTGCAGTAGTAAGGGTAGCAGCAACAACA
GCAGTAGCGAGCAAGGATTTCCAAGGCCGCCGACATGCCGCAGAAATCAA
GATCTGGGGGTAGACGGAGCGGAGAGGGCATTGCCAAGCTCCGAGATACA
CGCTGCCATCACACACCGTGATGAAGGTAGCAGCGGCGGTGGGAAATTCT
GCTCAACATCTCGGGAAAGTCGACCTGGCGTAGTAGCAACAGCAGCGGCG
GCCGTCACGGACCGTACTTCACAGCTTGTTGAGGACTCGGGGCTGGTTGA
AGACGTGGTTCGGGAGTGGTTCCAGGAACTGGTCGGAGAAACGAGTGTAG
TCGAAGGAGCGGGCTTGCTGCCTCCAGGAGATGCGCGACATAATGGAGCT
GGGGGAATTAAGGCAGCCGAGAGGGCGACCGCCGCCGCGGCTGGGCAGAC
TGCGTCAATAATAGTAGACAAGAGCAGAGCTGCGTCTACCGTGCCCATGT
CAGACAGAGGCAGGAGGGGTATGGGTGGTGTGACCAACAGGGATGGGGGT
GACGGCAGTCAGCTGTTGCCATTGGCGGAGAGTGTTGCAACGCAGGACAC
CGTGGAAGTGAGCAGCGTCCACCCTAAGCCGGTCCTCCGTGTTGGTGACA
AAGTTGTCCGAGACGTGCAAGACCAAAGCAGCCTATCCCTCAAAATAGCT
TCAACAGCAACATCGGCGTTGTTGTCCCAACCGCCGTCAGACCAGGCACA
CCCCAACCATCGGGACCTGTCGACTGCCATCAGCACGGCGGATGTAGTTC
GATCCACCTCTGCAAGAAAAGCGGCCTCGATCATGACTACGTCGCCGCTG
ACTGTGTCCGAAGCAAGTCCTACCGGAGTGCTGTGGTTGCCCGCACCATC
TGGTCACCAAACCACGGAACCGCGGAGCGTCGGTGGTAGTACGTCGACAG
CTGCACTTGACCCCTATTTCCCTCTAGGTTCTTCCTTGTCGGCCGATATG
CCAGCTATGATCCCGATCCAGGCCTTGCCATCATCGTCATCTGAACGTGC
GGACGAGAGGACGCGTTCACTCAAGGTGTCAAAATCTCCCCAACAATCAA
TGCCCGCAGAGGTCCCCGTCGCCACACGCGCAGCGGGCCAAGATGAACAT
GCGGACAAAGTACTGCGGATTAATCATGGACTACTCGGGTTTGACCGTGC
CATCGAGCAACCACCGCCGATGCTGCCGCCCTCAGCCGATAATGAATCGA
AGAACGTGTTGGTCGAAGAGCTGATCGCGGTATGCACAAACCCCGACAGA
GGATCGGGAAATGAGCCAATGCTACGAGAAGCGGAAGAATTGGAAGGTGT
TGCGGCAAACAGGTCTGGCAAGGGTGATGCTGCTACGATTGACGGTGGTA
ACGCAGAGCGCTTACGATATTCTGCTGCTCCAGCGGCAGGATCAGTTGCC
GTCTGTGGAAGCGAACCAGTCCGTCGGCCATCCCGTCCGCCCATCACTGA
ATTCTCACGGGGCAATGACTCACATCGTGACCAACGGGCGCGCGTCGGAG
ACTCGGGGGGAAATTCGGCGCAAGTGTGTCTACCAATCAGCATTCGGGCC
GACGAATGCGATCAATCGCTGACACCGCTGAAAGCGATAGTTGTGCCCCG
TGGTCGGAGTGGCGGCGGCGGCCCCGGGCAATCGTTCCCGCCGAGAGATC
TTTGTACTTCCCTTGTTGCGATAGGTGATGCCAGGACTCCTCTTCTACGG
ACCTGTTCTCCTAATCTCAGCTCGCAGGCAAAGGCAGGGCCAGAGCCTAA
CGGAGGTCAGAGACAAGCGACTGTCGACAACCAAGGCAGCAGCAACAGCG
AAAGCAGTGACGGTTATGCATCCTTCGGAAGCGCGCGCGGCAGTGGTAGC
GGCTGCAGTAGGACTTTCAAGAGGGGACGGGAGTCATGTCGCGACGATTA
TTCGTGGGATTGCGCTCGACCAGCTTGTCCCATCCCGAACCAAGTCGCGG
CCGGATCGGGATCCGAATGCCGACGGAATGATGATAGTGATCCGGGTAGA
TATTTGGGAGAGACAGGCGGGGGGAGTTGTGGTGACGGACGCGGAACGTT
TTGCCAGGAGTACAACCGTAAACGAGGTAGAGACATATTCATGTGCAGTA
GTAAGGGTAGCAGCAACAACAGCAGTAGCGAGCAAGGATTTCCAAGGCCG
CCGACATGCCGCAGAAATCAAGATCTGGGGGTAGACGGAGCGGAGAGGGC
ATTGCCAAGCTCCGAGATACACGCTGCCATCACACACCGTGATGAAGGTA
GCAGCGGCGGTGGGAAATTCTGCTCAACATCTCGGGAAAGTCGACCTGGC
GTAGTAGCAACAGCAGCGGCGGCCGTCACGGACCGTACTTCACAGCTTGT
TGAGGACTCGGGGCTGGTTGAAGACGTGGTTCGGGAGTGGTTCCAGGAAC
TGGTCGGAGAAACGAGTGTAGTCGAAGGAGCGGGCTTGCTGCCTCCAGGA
GATGCGCGACATAATGGAGCTGGGGGAATTAAGGCAGCCGAGAGGGCGAC
CGCCGCCGCGGCTGGGCAGACTGCGTCAATAATAGTAGACAAGAGCAGAG
CTGCGTCTACCGTGCCCATGTCAGACAGAGGCAGGAGGGGTATGGGTGGT
GTGACCAACAGGGATGGGGGTGACGGCAGTCAGCTGTTGCCATTGGCGGA
GAGTGTTGCAACGCAGGACACCGTGGAAGTGAGCAGCGTCCACCCTAAGC
CGGTCCTCCGTGTTGGTGACAAAGTTGTCCGAGACGTGCAAGACCAAAGC
AGCCTATCCCTCAAAATAGCTTCAACAGCAACATCGGCGTTGTTGTCCCA
ACCGCCGTCAGACCAGGCACACCCCAACCATCGGGACCTGTCGACTGCCA
TCAGCACGGCGGATGTAGTTCGATCCACCTCTGCAAGAAAAGCGGCCTCG
ATCATGACTACGTCGCCGCTGACTGTGTCCGAAGCAAGTCCTACCGGAGT
GCTGTGGTTGCCCGCACCATCTGGTCACCAAACCACGGAACCGCGGAGCG
TCGGTGGTAGTACGTCGACAGCTGCACTTGACCCCTATTTCCCTCTAGGT
TCTTCCTTGTCGGCCGATATGCCAGCTATGATCCCGATCCAGGCCTTGCC
ATCATCGTCATCTGAACGTGCGGACGAGAGGACGCGTTCACTCAAGGTGT
CAAAATCTCCCCAACAATCAATGCCCGCAGAGGTCCCCGTCGCCACACGC
GCAGCGGGCCAAGATGAACATGCGGACAAAGTACTGCGGATTAATCATGG
ACTACTCGGGTTTGACCGTGCCATCGAGCAACCACCGCCGATGCTGCCGC
CCTCAGCCGATAATGAATCGAAGAACGTGTTGGTCGAAGAGCTGATCGCG
GTATGCACAAACCCCGACAGAGGATCGGGAAATGAGCCAATGCTACGAGA
AGCGGAAGAATTGGAAGGTGTTGCGGCAAACAGGTCTGGCAAGGGTGATG
CTGCTACGATTGACGGTGGTAACGCAGAGCGCTTACGATATTCTGCTGCT
CCAGCGGCAGGATCAGTTGCCGTCTGTGGAAGCGAACCAGTCCGTCGGCC
ATCCCGTCCGCCCATCACTGAATTCTCACGGGGCAATGACTCACATCGTG
ACCAACGGGCGCGCGTCGGAGACTCGGGGGGAAATTCGGCGCAAGTGTGT
CTACCAATCAGCATTCGGGCCGACGAATGCGATCAATCGCTGACACCGCT
GAAAGCGATAGTTGTGCCCCGTGGTCGGAGTGGCGGCGGCGGCCCCGGGC
AATCGTTCCCGCCGAGAGATCTTTGTACTTCCCTTGTTGCGATAGGTGAT
GCCAGGACTCCTCTTCTACGGACCTGTTCTCCTAATCTCAGCGTCGGCAG
CAGCTGCGGGAGTGCGCGTCGAATCGAATCCGGCGCTTTAGACACCGTGT
CCCTGGTTTCGCATGCGGGAAGCAGCGCCTCCGCCTCTACGAGAAACGTC
AATGGTAGCGGTGGCGGTGATGATGGTGAGGAAAGTGGCAACGGCGATGC
CGACAACGATGGCGTCGGCAGCAGCTGCGGGAGTGCGCGTCGAATCGAAT
CCGGCGCTTTAGACACCGTGTCCCTGGTTTCGCATGCGGGAAGCAGCGCC
TCCGCCTCTACGAGAAACGTCAATGGTAGCGGTGGCGGTGATGATGGTGA
GGAAAGTGGCAACGGCGATGCCGACAACGATGGC
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