mRNA_H-paniculata_contig12851.1790.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12851.1790.1
Unique NamemRNA_H-paniculata_contig12851.1790.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12851.1790.1 vs. uniprot
Match: D7FQT3_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT3_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 3.520e-135
Identity = 197/220 (89.55%), Postives = 210/220 (95.45%), Query Frame = 3
Query:  144 MDLDTQQVLAYPGMKPGEVSSGTTIMAVAYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAIADYVRYFLASHSVELGRLPLVKTAAKLSQGLCYKNKDQLLAGMIIAGWDPVEGGTVYEIPLGGTLVKQKFAIGGSGSTYIYGHVDAEFRENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 803
            MD+ TQQ   YPG+K GE+S+GTTIMAV YDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAI DYVRYFLASHSVELGRLPLVKTAAK+++GLCY NKD+LLAGMIIAGWDPV+GGTVYEIPLGGT++KQKFAIGGSGSTYIYGHVDA F+ENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVS EYIPGD+LPFGP
Sbjct:    1 MDIATQQ--EYPGLKDGEISTGTTIMAVQYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAITDYVRYFLASHSVELGRLPLVKTAAKMARGLCYNNKDRLLAGMIIAGWDPVDGGTVYEIPLGGTMMKQKFAIGGSGSTYIYGHVDAAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSCEYIPGDQLPFGP 218          
BLAST of mRNA_H-paniculata_contig12851.1790.1 vs. uniprot
Match: A0A836CD01_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD01_9STRA)

HSP 1 Score: 355 bits (912), Expect = 1.960e-119
Identity = 171/210 (81.43%), Postives = 194/210 (92.38%), Query Frame = 3
Query:  174 YPGMKPGEVSSGTTIMAVAYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAIADYVRYFLASHSVELGRLPLVKTAAKLSQGLCYKNKDQLLAGMIIAGWDPVEGGTVYEIPLGGTLVKQKFAIGGSGSTYIYGHVDAEFRENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 803
            YPG+KP E+S+GTTIMA  YDGGVIMGADSRTSTGTYVANRVSDKIT+LHD+IYACRSGSAADTQAI+DYVRYFL+SHS E+GRLP VKTAA L++ +CY NKD LLAGMIIAGWDPV GG+VYEIPLGGT++KQ+FAIGGSGSTYIYGHVDA ++E MTKEEA+ FVRKAI+HAMARDGSSGGVIR+V IDK GV REYIPG++LP+GP
Sbjct:    7 YPGLKPNEISTGTTIMACMYDGGVIMGADSRTSTGTYVANRVSDKITALHDYIYACRSGSAADTQAISDYVRYFLSSHSAEVGRLPTVKTAANLARRICYNNKDNLLAGMIIAGWDPVHGGSVYEIPLGGTIMKQQFAIGGSGSTYIYGHVDAAYKEGMTKEEAKIFVRKAIAHAMARDGSSGGVIRIVTIDKDGVEREYIPGNELPYGP 216          
BLAST of mRNA_H-paniculata_contig12851.1790.1 vs. uniprot
Match: W7TIP5_9STRA (Proteasome subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIP5_9STRA)

HSP 1 Score: 338 bits (867), Expect = 1.490e-112
Identity = 162/208 (77.88%), Postives = 186/208 (89.42%), Query Frame = 3
Query:  180 GMKPGEVSSGTTIMAVAYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAIADYVRYFLASHSVELGRLPLVKTAAKLSQGLCYKNKDQLLAGMIIAGWDPVEGGTVYEIPLGGTLVKQKFAIGGSGSTYIYGHVDAEFRENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 803
            G+KPGEV++GTTIMAV +DGGV++GADSRTSTGTYVANRVSDK+T+LH HIY CRSGSAADTQA+ADYVRYFLASH+++LGR P V TAAKL   L Y+NKD LLAG+II GWDP +GG VY + LGGTL +QKF+IGGSGSTYIYGHVD  F+ENMT+EE Q FV+KAISHAMARDGSSGGVIRMV IDK+GVSRE+IPGDKLP+GP
Sbjct:   13 GLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPYGP 220          
BLAST of mRNA_H-paniculata_contig12851.1790.1 vs. uniprot
Match: A0A7S2WTH2_9STRA (Proteasome endopeptidase complex n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTH2_9STRA)

HSP 1 Score: 313 bits (802), Expect = 9.900e-103
Identity = 146/218 (66.97%), Postives = 188/218 (86.24%), Query Frame = 3
Query:  153 DTQQVLAYP-GMKPGEVSSGTTIMAVAYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAIADYVRYFLASHSVELGRLPLVKTAAKLSQGLCYKNKDQLLAGMIIAGWDPVEGGTVYEIPLGGTLVKQKFAIGGSGSTYIYGHVDAEFRENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 803
            + ++ +A+P   + GEVS+GTTIMA  +DGGV++GADSR STGTY+ANRVSDK+ +LHD I+ CRSGSAADTQAI+DYVRY+L+SH+ E+ R P VKTAA L++ + Y+NKD LLAG+I+ GWDPVEGG+VY IPLGGTL+K  FAIGGSGSTYIYGHVDA+++E M++EEAQ FV+K+I+HAMARDGSSGG+IR+V +D  GV R+Y+PGD+LP+GP
Sbjct:    2 EVERPMAFPVKARDGEVSTGTTIMACCFDGGVVLGADSRVSTGTYIANRVSDKVAALHDTIFMCRSGSAADTQAISDYVRYWLSSHATEVNRPPTVKTAATLARRIAYENKDALLAGVIVGGWDPVEGGSVYVIPLGGTLMKMPFAIGGSGSTYIYGHVDAQYKEGMSREEAQAFVKKSIAHAMARDGSSGGIIRLVTVDANGVERDYVPGDQLPYGP 219          
BLAST of mRNA_H-paniculata_contig12851.1790.1 vs. uniprot
Match: A0A7S3M7L5_9STRA (Proteasome subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7L5_9STRA)

HSP 1 Score: 308 bits (788), Expect = 1.130e-100
Identity = 144/208 (69.23%), Postives = 180/208 (86.54%), Query Frame = 3
Query:  180 GMKPGEVSSGTTIMAVAYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAIADYVRYFLASHSVELGRLPLVKTAAKLSQGLCYKNKDQLLAGMIIAGWDPVEGGTVYEIPLGGTLVKQKFAIGGSGSTYIYGHVDAEFRENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 803
            G++ GE+SSGTTIMAV +DGGV++GADSRTSTG+YVANRVSDKI  +HD+++ACRSGSAADTQA++DYV+Y++ SHS ELGRLP VKT A L + +CY NKD++ AGMI  GWDP EGG VYEIPLGGT+++QKFA+GGSGS+YIYG VD+ +RE M+KEE + FV+ AISHAMARDGSSGGVIR+VVID++G+ +E + GD LPF P
Sbjct:    8 GLREGEMSSGTTIMAVTFDGGVVLGADSRTSTGSYVANRVSDKIVPIHDYVWACRSGSAADTQAVSDYVKYYINSHSTELGRLPRVKTCANLMRKICYNNKDRMQAGMICGGWDPYEGGQVYEIPLGGTMMQQKFALGGSGSSYIYGLVDSTYREGMSKEECKVFVKTAISHAMARDGSSGGVIRLVVIDQSGIEKEVVLGDNLPFKP 215          
BLAST of mRNA_H-paniculata_contig12851.1790.1 vs. uniprot
Match: A0A0W8D518_PHYNI (Proteasome subunit beta n=15 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8D518_PHYNI)

HSP 1 Score: 302 bits (774), Expect = 1.640e-98
Identity = 145/205 (70.73%), Postives = 177/205 (86.34%), Query Frame = 3
Query:  183 MKPGEVSSGTTIMAVAYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAIADYVRYFLASHSVELGRLPLVKTAAKLSQGLCYKNKDQLLAGMIIAGWDPVEGGTVYEIPLGGTLVKQKFAIGGSGSTYIYGHVDAEFRENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPF 797
            +KPGEV +GT+I+AV ++GGV++GADSRTSTGTYVAN VSDK+T LHD ++ CRSGSAADTQA++DYVRY+L+SHSVELGRLP V TAA L + LCY NKD+LLAG+I+AGWDPV+GG V+ IP+GG +V+Q FAIGGSGSTYIYG VD+E+R NMTKEE QQFV+KA++HAMARDGSSGGVIR V I +  V R++  GD LPF
Sbjct:   12 LKPGEVDAGTSIIAVRFNGGVVLGADSRTSTGTYVANCVSDKLTPLHDRLFCCRSGSAADTQALSDYVRYYLSSHSVELGRLPKVGTAANLFRSLCYHNKDRLLAGIIVAGWDPVKGGQVFSIPIGGAMVEQDFAIGGSGSTYIYGLVDSEYRPNMTKEECQQFVKKALAHAMARDGSSGGVIRTVTITENEVVRDFTSGDDLPF 216          
BLAST of mRNA_H-paniculata_contig12851.1790.1 vs. uniprot
Match: A0A7S2V2Y9_9STRA (Proteasome endopeptidase complex n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Y9_9STRA)

HSP 1 Score: 302 bits (774), Expect = 4.270e-98
Identity = 144/207 (69.57%), Postives = 173/207 (83.57%), Query Frame = 3
Query:  183 MKPGEVSSGTTIMAVAYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAIADYVRYFLASHSVELGRLPLVKTAAKLSQGLCYKNKDQLLAGMIIAGWDPVEGGTVYEIPLGGTLVKQKFAIGGSGSTYIYGHVDAEFRENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 803
            +KPGEVS+GTTIMA  Y+GGV++GADSRTSTGTYVANR S+K+T L D+I+ CRSGSAADT+A+ DYV+YFL SHS E+G  P V++AA L + LCY+NKD L+AGMII GWDPV+GG VY +PLGGTL++Q  AIGGSGSTYIYGHVDA +R  M+KEE   FV KAISHAMARDGSSGGVIR+V ID  G+ ++Y  GDKLP+GP
Sbjct:   40 LKPGEVSTGTTIMACEYEGGVVVGADSRTSTGTYVANRASNKVTYLADNIFGCRSGSAADTEAVTDYVKYFLESHSTEIGGPPRVRSAAHLVRKLCYENKDALMAGMIIGGWDPVDGGQVYSVPLGGTLMRQPVAIGGSGSTYIYGHVDAAYRPGMSKEECHAFVAKAISHAMARDGSSGGVIRLVSIDANGIEKQYFAGDKLPYGP 246          
BLAST of mRNA_H-paniculata_contig12851.1790.1 vs. uniprot
Match: F0W411_9STRA (Proteasome subunit beta n=2 Tax=Albugo TaxID=65356 RepID=F0W411_9STRA)

HSP 1 Score: 301 bits (771), Expect = 4.340e-98
Identity = 145/213 (68.08%), Postives = 178/213 (83.57%), Query Frame = 3
Query:  159 QQVLAYPGMKPGEVSSGTTIMAVAYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAIADYVRYFLASHSVELGRLPLVKTAAKLSQGLCYKNKDQLLAGMIIAGWDPVEGGTVYEIPLGGTLVKQKFAIGGSGSTYIYGHVDAEFRENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPF 797
            Q++ A   +K GEV +GT+I+AV +DGGV++GADSRTSTG YVANRVSDK+T LHD IY CRSGSAADTQA++DYVRYFL+SHS+++G+LP V TAA L + LCY NKD+LLAG+I+AGWDPV GG VY IP+GG +VKQ FAIGGSGSTYIYG VDA +R +MT+EE Q FV+K ++HAMARDGSSGGVIR V I K  V+RE+  G++LPF
Sbjct:    2 QEMYAANFLKNGEVDAGTSIIAVKFDGGVVLGADSRTSTGAYVANRVSDKLTGLHDRIYCCRSGSAADTQALSDYVRYFLSSHSLDVGKLPKVHTAANLFRSLCYNNKDRLLAGIIVAGWDPVHGGQVYSIPIGGAMVKQNFAIGGSGSTYIYGLVDAAYRPDMTQEECQAFVKKMLAHAMARDGSSGGVIRTVTITKDSVTREFTSGEQLPF 214          
BLAST of mRNA_H-paniculata_contig12851.1790.1 vs. uniprot
Match: K3WDU5_GLOUD (Proteasome subunit beta n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WDU5_GLOUD)

HSP 1 Score: 300 bits (768), Expect = 1.320e-97
Identity = 141/205 (68.78%), Postives = 176/205 (85.85%), Query Frame = 3
Query:  183 MKPGEVSSGTTIMAVAYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAIADYVRYFLASHSVELGRLPLVKTAAKLSQGLCYKNKDQLLAGMIIAGWDPVEGGTVYEIPLGGTLVKQKFAIGGSGSTYIYGHVDAEFRENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPF 797
            +K GE+ +GT+I+AV +DGGV++GADSRTSTGTY+ANRVSDK+T LHD I+ CRSGSAADTQA++DYV+YFL+SH+V+LGRLP V TAA L + LCY NKD+LLAG+I+AGWDP++GG V+ +P+GG +V+Q FAIGGSGSTYIYG VDAE++  MTKEE Q+FV+KA++HAMARDGSSGGVIR V I K  V RE+  GD LPF
Sbjct:   12 LKRGEIDAGTSIIAVRFDGGVVLGADSRTSTGTYIANRVSDKLTPLHDRIFCCRSGSAADTQALSDYVKYFLSSHAVDLGRLPKVHTAANLFRSLCYNNKDRLLAGIIVAGWDPIKGGQVFSVPIGGAMVEQDFAIGGSGSTYIYGLVDAEYKPGMTKEECQKFVKKALAHAMARDGSSGGVIRTVTITKDEVVREFTSGDALPF 216          
BLAST of mRNA_H-paniculata_contig12851.1790.1 vs. uniprot
Match: A0A2D4BVR2_PYTIN (Proteasome subunit beta n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BVR2_PYTIN)

HSP 1 Score: 299 bits (765), Expect = 3.620e-97
Identity = 142/205 (69.27%), Postives = 176/205 (85.85%), Query Frame = 3
Query:  183 MKPGEVSSGTTIMAVAYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAIADYVRYFLASHSVELGRLPLVKTAAKLSQGLCYKNKDQLLAGMIIAGWDPVEGGTVYEIPLGGTLVKQKFAIGGSGSTYIYGHVDAEFRENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPF 797
            +KPGE+ +GT+I+AV +DGGV++GADSRTSTGTY+ANRVSDK+T LHD IY CRSGSAADTQA++DYVR+FLASH+++LGR P V TAA L + LCY NKD+LLAG+I+AG DPV+GG V+ IP+GG +V+Q FAIGGSGSTYIYG+VD+ +R NMTKEE Q FV+KA++HAMARDGSSGGVIRMV I    V RE++ G +LPF
Sbjct:   11 LKPGEIDAGTSIIAVRFDGGVVLGADSRTSTGTYIANRVSDKLTPLHDRIYCCRSGSAADTQALSDYVRHFLASHAMDLGRRPKVHTAANLFRSLCYNNKDRLLAGIIVAGVDPVKGGQVFSIPIGGAMVEQDFAIGGSGSTYIYGYVDSAYRPNMTKEECQSFVKKALAHAMARDGSSGGVIRMVTITADDVVREFVSGTELPF 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12851.1790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT3_ECTSI3.520e-13589.55Proteasome subunit beta n=1 Tax=Ectocarpus silicul... [more]
A0A836CD01_9STRA1.960e-11981.43Proteasome endopeptidase complex n=1 Tax=Tribonema... [more]
W7TIP5_9STRA1.490e-11277.88Proteasome subunit beta n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S2WTH2_9STRA9.900e-10366.97Proteasome endopeptidase complex n=1 Tax=Rhizochro... [more]
A0A7S3M7L5_9STRA1.130e-10069.23Proteasome subunit beta n=1 Tax=Spumella elongata ... [more]
A0A0W8D518_PHYNI1.640e-9870.73Proteasome subunit beta n=15 Tax=Peronosporaceae T... [more]
A0A7S2V2Y9_9STRA4.270e-9869.57Proteasome endopeptidase complex n=1 Tax=Fibrocaps... [more]
F0W411_9STRA4.340e-9868.08Proteasome subunit beta n=2 Tax=Albugo TaxID=65356... [more]
K3WDU5_GLOUD1.320e-9768.78Proteasome subunit beta n=2 Tax=Pythiaceae TaxID=4... [more]
A0A2D4BVR2_PYTIN3.620e-9769.27Proteasome subunit beta n=2 Tax=Pythium TaxID=4797... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12851contigH-paniculata_contig12851:2073..5359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score401.0
Seed ortholog evalue3.7e-109
Seed eggNOG ortholog2880.D7FQT3
Preferred namePBA1
KEGG koko:K02738,ko:K11507
KEGG Pathwayko03050,map03050
KEGG ModuleM00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005839,GO:0019774,GO:0032991,GO:0044424,GO:0044464,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.Proteasome subunit beta
EggNOG OGsKOG0174@1,KOG0174@2759
Ec32 ortholog descriptionPeptidase T1A, proteasome beta-subunit
Ec32 orthologEc-16_000630.1
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03036,ko03051
Exons5
Model size1293
Cds size663
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.0040865-UTR-H-paniculata_contig12851:2072..25591622929012.0040865-UTR-H-paniculata_contig12851:2072..2559Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12851 2073..2559 -
1691480698.555531-UTR-H-paniculata_contig12851:2072..25591691480698.555531-UTR-H-paniculata_contig12851:2072..2559Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12851 2073..2559 -
1622929012.080744-UTR-H-paniculata_contig12851:5216..53591622929012.080744-UTR-H-paniculata_contig12851:5216..5359Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12851 5217..5359 -
1691480698.628044-UTR-H-paniculata_contig12851:5216..53591691480698.628044-UTR-H-paniculata_contig12851:5216..5359Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12851 5217..5359 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.0157793-CDS-H-paniculata_contig12851:2559..26071622929012.0157793-CDS-H-paniculata_contig12851:2559..2607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12851 2560..2607 -
1691480698.5679123-CDS-H-paniculata_contig12851:2559..26071691480698.5679123-CDS-H-paniculata_contig12851:2559..2607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12851 2560..2607 -
1622929012.027937-CDS-H-paniculata_contig12851:2922..30671622929012.027937-CDS-H-paniculata_contig12851:2922..3067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12851 2923..3067 -
1691480698.5811794-CDS-H-paniculata_contig12851:2922..30671691480698.5811794-CDS-H-paniculata_contig12851:2922..3067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12851 2923..3067 -
1622929012.0382206-CDS-H-paniculata_contig12851:3435..36391622929012.0382206-CDS-H-paniculata_contig12851:3435..3639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12851 3436..3639 -
1691480698.6009548-CDS-H-paniculata_contig12851:3435..36391691480698.6009548-CDS-H-paniculata_contig12851:3435..3639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12851 3436..3639 -
1622929012.0510073-CDS-H-paniculata_contig12851:3982..41821622929012.0510073-CDS-H-paniculata_contig12851:3982..4182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12851 3983..4182 -
1691480698.610512-CDS-H-paniculata_contig12851:3982..41821691480698.610512-CDS-H-paniculata_contig12851:3982..4182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12851 3983..4182 -
1622929012.0647135-CDS-H-paniculata_contig12851:5150..52161622929012.0647135-CDS-H-paniculata_contig12851:5150..5216Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12851 5151..5216 -
1691480698.6192913-CDS-H-paniculata_contig12851:5150..52161691480698.6192913-CDS-H-paniculata_contig12851:5150..5216Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12851 5151..5216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12851.1790.1prot_H-paniculata_contig12851.1790.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12851 2560..5216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12851.1790.1

>prot_H-paniculata_contig12851.1790.1 ID=prot_H-paniculata_contig12851.1790.1|Name=mRNA_H-paniculata_contig12851.1790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp
MDLDTQQVLAYPGMKPGEVSSGTTIMAVAYDGGVIMGADSRTSTGTYVAN
RVSDKITSLHDHIYACRSGSAADTQAIADYVRYFLASHSVELGRLPLVKT
AAKLSQGLCYKNKDQLLAGMIIAGWDPVEGGTVYEIPLGGTLVKQKFAIG
GSGSTYIYGHVDAEFRENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVV
IDKTGVSREYIPGDKLPFGP*
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mRNA from alignment at H-paniculata_contig12851:2073..5359-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12851.1790.1 ID=mRNA_H-paniculata_contig12851.1790.1|Name=mRNA_H-paniculata_contig12851.1790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3287bp|location=Sequence derived from alignment at H-paniculata_contig12851:2073..5359- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGTCAAGTGGACACAGATTAGGAGGGTGGATAAACTCACTGAGTGTAG CAAGGAGCTCTGGAGAAGATACTAAGTGCTGTCAGTACAGAAGAAGTAAA GGTGTTCAAAGGACAGAAGTGACACTTCCTTCTTGGACATACAATGGATC TCGATACGCAACAGGTCTTGGCCTATCCCGGGATGAAGCCTGGAGAAGTG TCCTCAGGGGTGAGTCTGTGTGTAGCCTTAGCCTACTAATTCTCTTTGCT GTACAAAATTAGAGTTGTGCCTAATGCAGGATAGTGCTGAACTTACATCG TGATCGTGTTCTGGGGACGACCCTATTGAAGAGCGACACCAGTCTATAGC TGTGTGCGTTCACGTAGGGCAGTCAGTTTATCTACACACACCAAGCTAGA GAAACATCTTCGCTTAACCTACATGGTTCCCAACATCACCAGAATCACCT TGCCCGAGGGACGAATATAATATCATTGAATAGCTTGGGCTATTGGTTGC ATAGAGCTGATAAGCTTTATGTTGACGGTGGTGAAGGTCGTGATATGCAC TTGTGTCCTATAGAATCGTTCGGCTTCCATCAAAGCCGTCGTGTTGACGT GCTTTCTGTGTAATGTTTTGCAACTGCTATGGATACCTTTGAACTACTCA CCAACCAGACTTGAGCTTTATAAAGAGATGGAATGACGGTCAGGTTTGTG ATACCCAAAGGCGAGGATCGTTTTCTCGTTCGTTGCATCCCTGTCAGGCA ACGTTGGTTTGTTACTTGAAGCTGTTTCTGTATCTCAACACTAGAAGTTT AGTCCAAGTTGAAACGTCTGCATCCAAATGTACCGCGCGATCAACTTTGC CGCAACTTCACCCAGTTCAATGCCGAACACATATAGATACTTACAGCAGT ATATAGTTGGCTGCACGGGGATTGTTGGTGAATTTGGGAGAGTCGAAATG TAAAAGTGAAGACGTGGTACCTATTTCCGTGTTTGTATGCTATCGATGGA TGCCCTCCACGGGAACGAATTCCAACTGGGATAAATATGTACTCAACTTC GTGAACGAATCAACTGCTCTGTTGTTACGCCTAGAGCACCTGGTCCTCTT GTTGGAAGTGTGAACAAGCCTCACCATGTTTATTCCGGGTCCTTTATTAT CGCTTGTCTTTACATGTGTGTTGAAAGACAACGATCATGGCGGTGGCGTA CGATGGTGGGGTTATCATGGGGGCGGACTCGCGGACATCCACAGGTACGT ATGTGGCCAACCGAGTGAGTGACAAGATCACTTCATTGCACGATCATATC TACGCATGTCGATCGGGCTCTGCCGCAGACACCCAGGCGATTGCGGATTA CGTGCGCTACTTCTTGGCCTCCCACAGGTAATAGCTAATTACGAAAAGCA GCATTTCCACCACCACCTTCGGAAAGTTGTTTGGCGTCTCTCAGAGTACT GAGGGTGTCGTAAATATCGGCGCCGATAGCTCACTCATTTGCTCTCTACG ATACACAATATTTCTTTCGGTAAATCGAGGCTTCCGTATATCCAAATGCC GGGCTTCCGCTTATTGCTGCAGTGCGCGCTTTTTATCTCATCGGCCGACC GATTACCAGTGACTGATCAGAGTCGAAGGTATTTCTCCAGTTTGTTGTAT TTGTGGACTACTCTTATCAATAGTCGAGTACACCCCGCATTCCTTGGATA TGTCATCATATTTCCATCAGCGTGGAGCTGGGACGACTGCCTTTGGTCAA AACCGCGGCGAAGCTGTCTCAAGGACTTTGCTACAAGAACAAGGACCAGC TCCTAGCAGGGATGATCATTGCAGGATGGGATCCAGTGGAAGGAGGAACG GTATATGAGATTCCGTTGGGAGGTACTCTGGTGAAGCAGAAATTCGCCAT CGGGGGTTCCGGGTCGACGTACATGTGAGGAAATCGGTCGACAGCAGTAG GTCGTTCAGGTATTTTTTCGTCTGAGGAACGACAGTGGTTAGTTTATCCT TCTCGGCACCAGCGTCTGTCATGGACCTGCGATTTCGTTATGAGAAAACA GCTATTAAAATGTGTGGATCTTCTGTTCCCTCACCTTTTTCCTCCAAACA TCCTCCCACGTTTCCAAAATTGGCCGTGGCTCCCATCTAGTTATACTGAT CCAACATCACAGTTGTGTACTGCACTTTACCACGCTAGATGTGGGTACCG TTGCGCTAGCGTACAGAACGTTACGATAGTCCAGTACCTTTTATGCAAAT GTTTGGGTCCATGAACATCTCTCTTCATATTCTGAATTGCAGCTACGGGC ACGTGGATGCTGAATTTAGAGAGAATATGACTAAGGAGGAAGCGCAGCAA TTCGTTCGCAAGGCCATCTCTCACGCTATGGCTAGGGACGGGAGCTCCGG GGGAGTTATCCGAATGGTGGTGATCGACAAGACAGGGGTGAGCATAGAGT ACCTGATCGTGGTGGTACATTGATATCCGCCATGTCATCCCGCCTGTTGA ACCTAGTCCATAGCGGCTGGTAGACCATGGTCGAAAGTCGAGGGTGCCGC TTTTTTCCACATTTGACCCTAAATATTACGTCAACATCGCCAAATTACAG TCTCGACTCCACCTCTCATTCAAGAGGTCAACATTTAATGGCTCTCTCAT ATCTTGGATGTGTTTGATATATCGTTTTTTCGCGATTGAAACATTTTACT GATCATACACACTTGTTTGGGCTGCTTTTCACGTTTTCTCTTGGCGCCTC AGGTTTCTCGCGAGTACATCCCAGGAGACAAGTTGCCATTTGGACCGTGA TGCATTCAGCCGCATTCGTTGGTGATACTTGTAAGAATATTAGCAGGGAA GCGAAGAATGGGAATGAGCTTCGAATGACATTCGACGTTCATTACACCGT ATGCCGGGAAGTGTATTGCTTGGTTGCGGGCGGGAGAGTAGACATTCGAT GCCGCACATACCGACCGGTAACTTAGTTGTGGTTGACTATCCTGCGGAAG ACAAAAGGACCTGGAAATTTTCTATGGAGACAAGAACTGTTTATTCCACC ATATCTCTTGTCGGAGATTTTGAGGCTAACATCAATAATGAGGTCACATT CCAGTAAGAACGGCAGGAGAAGTTAATACTTCCCTCCTTTCCTTTCCACC CCAGAGTGTAAACCCTCTGTATATACCATTCGGAAACGTCGTGAGGGAAG GGGCTTAATCCCACGTCAAGATAACAAGTACCAAGCCCCGATTTCCGATC CCCGCAAAACGCGGGGAATACTATCGTATCGGTCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig12851:2073..5359-

>mRNA_H-paniculata_contig12851.1790.1 ID=mRNA_H-paniculata_contig12851.1790.1|Name=mRNA_H-paniculata_contig12851.1790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at H-paniculata_contig12851:2073..5359- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCTCGATACGCAACAGGTCTTGGCCTATCCCGGGATGAAGCCTGG
AGAAGTGTCCTCAGGGATGGATCTCGATACGCAACAGGTCTTGGCCTATC
CCGGGATGAAGCCTGGAGAAGTGTCCTCAGGGACAACGATCATGGCGGTG
GCGTACGATGGTGGGGTTATCATGGGGGCGGACTCGCGGACATCCACAGG
TACGTATGTGGCCAACCGAGTGAGTGACAAGATCACTTCATTGCACGATC
ATATCTACGCATGTCGATCGGGCTCTGCCGCAGACACCCAGGCGATTGCG
GATTACGTGCGCTACTTCTTGGCCTCCCACAGACAACGATCATGGCGGTG
GCGTACGATGGTGGGGTTATCATGGGGGCGGACTCGCGGACATCCACAGG
TACGTATGTGGCCAACCGAGTGAGTGACAAGATCACTTCATTGCACGATC
ATATCTACGCATGTCGATCGGGCTCTGCCGCAGACACCCAGGCGATTGCG
GATTACGTGCGCTACTTCTTGGCCTCCCACAGCGTGGAGCTGGGACGACT
GCCTTTGGTCAAAACCGCGGCGAAGCTGTCTCAAGGACTTTGCTACAAGA
ACAAGGACCAGCTCCTAGCAGGGATGATCATTGCAGGATGGGATCCAGTG
GAAGGAGGAACGGTATATGAGATTCCGTTGGGAGGTACTCTGGTGAAGCA
GAAATTCGCCATCGGGGGTTCCGGGTCGACGTACATCGTGGAGCTGGGAC
GACTGCCTTTGGTCAAAACCGCGGCGAAGCTGTCTCAAGGACTTTGCTAC
AAGAACAAGGACCAGCTCCTAGCAGGGATGATCATTGCAGGATGGGATCC
AGTGGAAGGAGGAACGGTATATGAGATTCCGTTGGGAGGTACTCTGGTGA
AGCAGAAATTCGCCATCGGGGGTTCCGGGTCGACGTACATCTACGGGCAC
GTGGATGCTGAATTTAGAGAGAATATGACTAAGGAGGAAGCGCAGCAATT
CGTTCGCAAGGCCATCTCTCACGCTATGGCTAGGGACGGGAGCTCCGGGG
GAGTTATCCGAATGGTGGTGATCGACAAGACAGGGCTACGGGCACGTGGA
TGCTGAATTTAGAGAGAATATGACTAAGGAGGAAGCGCAGCAATTCGTTC
GCAAGGCCATCTCTCACGCTATGGCTAGGGACGGGAGCTCCGGGGGAGTT
ATCCGAATGGTGGTGATCGACAAGACAGGGGTTTCTCGCGAGTACATCCC
AGGAGACAAGTTGCCATTTGGACCGTGAGTTTCTCGCGAGTACATCCCAG
GAGACAAGTTGCCATTTGGACCGTGA
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