mRNA_H-paniculata_contig12842.1787.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12842.1787.1
Unique NamemRNA_H-paniculata_contig12842.1787.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12842.1787.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 9.380e-35
Identity = 65/110 (59.09%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:    7 QVLASLQILGRGNSSDDIGQLSLMSESTAQSAFHMFCKCFADDLFHEQIKLPTGDAIAATMKAYDAVGFTGAVGSIDVAHIAWGCTPASHTHLYTGKEGFPTFAYDATVD 336
            QVL +LQ LGRGN  DDI QLSLMS+  A + FH FCK FA +LF E I LPTG      M  YD +G TGA+GS DV HI WG  P +    YTGKEGFPT AY  TVD
Sbjct:    3 QVLTTLQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVD 112
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BLAST of mRNA_H-paniculata_contig12842.1787.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.630e-34
Identity = 66/110 (60.00%), Postives = 73/110 (66.36%), Query Frame = 1 
Query:    7 QVLASLQILGRGNSSDDIGQLSLMSESTAQSAFHMFCKCFADDLFHEQIKLPTGDAIAATMKAYDAVGFTGAVGSIDVAHIAWGCTPASHTHLYTGKEGFPTFAYDATVD 336
            QVL +LQILGRGN  DDI QLSLMS+  A + FH FCK FA +LF E I LPTG      M  YD +G TGA+GS DV HI WG  P +    YTGKEGFPT AY  TVD
Sbjct:    3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVD 112
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BLAST of mRNA_H-paniculata_contig12842.1787.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.820e-33
Identity = 65/111 (58.56%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:    4 TQVLASLQILGRGNSSDDIGQLSLMSESTAQSAFHMFCKCFADDLFHEQIKLPTGDAIAATMKAYDAVGFTGAVGSIDVAHIAWGCTPASHTHLYTGKEGFPTFAYDATVD 336
            T++L +LQILGRGN  DDI QLSLMS+  A + FH FCK FA +LF E I LPTG      M  YD +G TGA+GS DV HI WG  P +    YTGKEGFPT AY  TVD
Sbjct:  249 TKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVD 359
[Close]
BLAST of mRNA_H-paniculata_contig12842.1787.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.810e-29
Identity = 62/112 (55.36%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:    7 QVLASLQILGRGNSSDDIGQLSLMSESTAQSAFHMFCKCFADDLFHEQIKLPTGDA--IAATMKAYDAVGFTGAVGSIDVAHIAWGCTPASHTHLYTGKEGFPTFAYDATVD 336
            +VLA L ILGRGN    I Q+S MS  T Q  FH FC+ FA +++ EQI LPT ++  +   MK YD +GFTGAVGS+DV HIAW   P +    YTGKEGFPT AY  TVD
Sbjct:   85 KVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVD 196
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BLAST of mRNA_H-paniculata_contig12842.1787.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 7.630e-28
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   25 QILGRGNSSDDIGQLSLMSESTAQSAFHMFCKCFADDLFHEQIKLPTGDAIAATMKAYDAVGFTGAVGSIDVAHIAWGCTPASHTHLYTGKEGFPTFAYDATVD 336
            Q+LG+GN  DD+ QLS MS+S AQ  FH FC+ FA ++F E I LPTG  +   M  +  +G+TGA GS DV HI W   P +    +TGKEGFPT AYD TVD
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVD 145
[Close]
BLAST of mRNA_H-paniculata_contig12842.1787.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.780e-27
Identity = 57/110 (51.82%), Postives = 69/110 (62.73%), Query Frame = 1 
Query:    7 QVLASLQILGRGNSSDDIGQLSLMSESTAQSAFHMFCKCFADDLFHEQIKLPTGDAIAATMKAYDAVGFTGAVGSIDVAHIAWGCTPASHTHLYTGKEGFPTFAYDATVD 336
            +VLA LQIL RGN   DI  +S +S  TA + FH F + FA +++ E I LPTGD     M  YD +GF+GA GS DV HI WG  P +    YTGKEG+PT AY  TVD
Sbjct:  158 KVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVD 267
[Close]
BLAST of mRNA_H-paniculata_contig12842.1787.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.750e-25
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:    7 QVLASLQILGRGNSSDDIGQLSLMSESTAQSAFHMFCKCFADDLFHEQIKLPT--GDAIAATMKAYDAVGFTGAVGSIDVAHIAWGCTPASHTHLYTGKEGFPTFAYDATVD 336
            +VLA L ILGRGN    I Q+S MS +T Q+ FH FCK FA +++ E I LP+     +   MK YD +GF+GA+GS+DV HI W   P +    YTGKEG PT  Y  TV+
Sbjct:  125 KVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVN 236
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BLAST of mRNA_H-paniculata_contig12842.1787.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 6.830e-25
Identity = 56/112 (50.00%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:    7 QVLASLQILGRGNSSDDIGQLSLMSESTAQSAFHMFCKCFADDLFHEQIKLPT--GDAIAATMKAYDAVGFTGAVGSIDVAHIAWGCTPASHTHLYTGKEGFPTFAYDATVD 336
            +VLA L ILGRGN    I Q+S MS +T Q+ FHMFCK FA +++ E I LP+     +   MK YD +GF+GA+GS+DV HI W   P +    YTGKEG PT  Y  TV+
Sbjct:  125 KVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVN 236
[Close]
BLAST of mRNA_H-paniculata_contig12842.1787.1 vs. uniprot
Match: A0A6H5JIW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW4_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.590e-24
Identity = 51/104 (49.04%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:   25 QILGRGNSSDDIGQLSLMSESTAQSAFHMFCKCFADDLFHEQIKLPTGDAIAATMKAYDAVGFTGAVGSIDVAHIAWGCTPASHTHLYTGKEGFPTFAYDATVD 336
            ++LG+G   DD+ QLS MS+S AQ+ FH F + FA ++F E I LPTG  +   M  +  +G TGA GS DV HI W   P +    +TGKEGFPT AY+ TVD
Sbjct:    3 RVLGKGTCFDDVEQLSKMSKSMAQATFHKFRRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGWNMCPFTLGRPFTGKEGFPTIAYEVTVD 106
[Close]
BLAST of mRNA_H-paniculata_contig12842.1787.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.330e-24
Identity = 53/105 (50.48%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:   22 LQILGRGNSSDDIGQLSLMSESTAQSAFHMFCKCFADDLFHEQIKLPTGDAIAATMKAYDAVGFTGAVGSIDVAHIAWGCTPASHTHLYTGKEGFPTFAYDATVD 336
            L++LG+GN  DD+ QLS MSES AQ+ FH FC+  A ++F E I LPTG  +   M  +  +G TGA GS DV HI     P +    +TGKEGFPT AY+ TVD
Sbjct:  137 LKVLGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVD 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12842.1787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6N4_9PHAE9.380e-3559.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE1.630e-3460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE3.820e-3358.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.810e-2955.36DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K796_9PHAE7.630e-2852.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE3.780e-2751.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE3.750e-2549.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FPI7_ECTSI6.830e-2550.00Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5JIW4_9PHAE1.590e-2449.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE2.330e-2450.48DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12842contigH-paniculata_contig12842:390..725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue2.3e-11
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929005.0807014-CDS-H-paniculata_contig12842:389..7251622929005.0807014-CDS-H-paniculata_contig12842:389..725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12842 390..725 -
1691480698.4176211-CDS-H-paniculata_contig12842:389..7251691480698.4176211-CDS-H-paniculata_contig12842:389..725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12842 390..725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12842.1787.1prot_H-paniculata_contig12842.1787.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12842 390..725 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12842.1787.1

>prot_H-paniculata_contig12842.1787.1 ID=prot_H-paniculata_contig12842.1787.1|Name=mRNA_H-paniculata_contig12842.1787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
ITQVLASLQILGRGNSSDDIGQLSLMSESTAQSAFHMFCKCFADDLFHEQ
IKLPTGDAIAATMKAYDAVGFTGAVGSIDVAHIAWGCTPASHTHLYTGKE
GFPTFAYDATVD
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mRNA from alignment at H-paniculata_contig12842:390..725-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12842.1787.1 ID=mRNA_H-paniculata_contig12842.1787.1|Name=mRNA_H-paniculata_contig12842.1787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at H-paniculata_contig12842:390..725- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAACACAGGTTCTGGCGAGCTTGCAGATTCTGGGGAGAGGGAATAGCTC
CGATGATATCGGCCAGCTCTCCTTGATGAGCGAGTCGACTGCCCAAAGTG
CGTTCCACATGTTTTGCAAGTGTTTCGCTGACGATCTTTTTCATGAGCAG
ATTAAACTCCCTACCGGGGATGCCATCGCAGCCACGATGAAGGCGTACGA
TGCGGTGGGATTCACCGGGGCAGTAGGCTCGATTGATGTCGCCCATATCG
CATGGGGTTGCACCCCGGCATCACATACCCATCTCTACACGGGCAAGGAA
GGATTCCCGACTTTCGCATACGATGCAACGGTAGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig12842:390..725-

>mRNA_H-paniculata_contig12842.1787.1 ID=mRNA_H-paniculata_contig12842.1787.1|Name=mRNA_H-paniculata_contig12842.1787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig12842:390..725- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAACACAGGTTCTGGCGAGCTTGCAGATTCTGGGGAGAGGGAATAGCTC
CGATGATATCGGCCAGCTCTCCTTGATGAGCGAGTCGACTGCCCAAAGTG
CGTTCCACATGTTTTGCAAGTGTTTCGCTGACGATCTTTTTCATGAGCAG
ATTAAACTCCCTACCGGGGATGCCATCGCAGCCACGATGAAGGCGTACGA
TGCGGTGGGATTCACCGGGGCAGTAGGCTCGATTGATGTCGCCCATATCG
CATGGGGTTGCACCCCGGCATCACATACCCATCTCTACACGGGCAAGGAA
GGATTCCCGACTTTCGCATACGATGCAACGGTAGACATAACACAGGTTCT
GGCGAGCTTGCAGATTCTGGGGAGAGGGAATAGCTCCGATGATATCGGCC
AGCTCTCCTTGATGAGCGAGTCGACTGCCCAAAGTGCGTTCCACATGTTT
TGCAAGTGTTTCGCTGACGATCTTTTTCATGAGCAGATTAAACTCCCTAC
CGGGGATGCCATCGCAGCCACGATGAAGGCGTACGATGCGGTGGGATTCA
CCGGGGCAGTAGGCTCGATTGATGTCGCCCATATCGCATGGGGTTGCACC
CCGGCATCACATACCCATCTCTACACGGGCAAGGAAGGATTCCCGACTTT
CGCATACGATGCAACGGTAGAC
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