mRNA_H-paniculata_contig12840.1785.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12840.1785.1
Unique NamemRNA_H-paniculata_contig12840.1785.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig12840.1785.1 vs. uniprot
Match: A0A6H5KFF8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFF8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.090e-19
Identity = 54/104 (51.92%), Postives = 67/104 (64.42%), Query Frame = 2 
Query:    2 TLDGTRVEEVMVLSSAGNSTSGVGEHSSELVWPRGLAFGAGSSSGLLFSEHLGAVRLLSDPAGGVEPDTIAQEDGYPAAVAVRALKSRAAKEGLLGKFFTETAQ 313
            TLDGTR E+V V    G    G      +LVWPRGLAFGA +S+GLLF E+LG+VRLL  P      DTIA+ D YPAAVA+ AL + A +EG   +FFT + +
Sbjct:  424 TLDGTRPEDVSV-EDDGTEAKG------QLVWPRGLAFGAEASTGLLFGEYLGSVRLLPLPPARGSVDTIAEADSYPAAVAIHALVAAAGREGAEERFFTHSVR 520
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12840.1785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFF8_9PHAE6.090e-1951.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12840contigH-paniculata_contig12840:2489..3617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size588
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12840.1785.1prot_H-paniculata_contig12840.1785.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12840 2520..3345 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929004.2630725-UTR-H-paniculata_contig12840:2488..25191622929004.2630725-UTR-H-paniculata_contig12840:2488..2519Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12840 2489..2519 +
1691480698.3128242-UTR-H-paniculata_contig12840:2488..25191691480698.3128242-UTR-H-paniculata_contig12840:2488..2519Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12840 2489..2519 +
1622929004.9322462-UTR-H-paniculata_contig12840:3345..36171622929004.9322462-UTR-H-paniculata_contig12840:3345..3617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12840 3346..3617 +
1691480698.3378735-UTR-H-paniculata_contig12840:3345..36171691480698.3378735-UTR-H-paniculata_contig12840:3345..3617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12840 3346..3617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929004.278364-CDS-H-paniculata_contig12840:2519..25381622929004.278364-CDS-H-paniculata_contig12840:2519..2538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12840 2520..2538 +
1691480698.3209643-CDS-H-paniculata_contig12840:2519..25381691480698.3209643-CDS-H-paniculata_contig12840:2519..2538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12840 2520..2538 +
1622929004.2899961-CDS-H-paniculata_contig12840:3079..33451622929004.2899961-CDS-H-paniculata_contig12840:3079..3345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12840 3080..3345 +
1691480698.3282335-CDS-H-paniculata_contig12840:3079..33451691480698.3282335-CDS-H-paniculata_contig12840:3079..3345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12840 3080..3345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12840.1785.1

>prot_H-paniculata_contig12840.1785.1 ID=prot_H-paniculata_contig12840.1785.1|Name=mRNA_H-paniculata_contig12840.1785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MVLSSAGNSTSGVGEHSSELVWPRGLAFGAGSSSGLLFSEHLGAVRLLSD
PAGGVEPDTIAQEDGYPAAVAVRALKSRAAKEGLLGKFFTETAQ*
back to top

mRNA from alignment at H-paniculata_contig12840:2489..3617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12840.1785.1 ID=mRNA_H-paniculata_contig12840.1785.1|Name=mRNA_H-paniculata_contig12840.1785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1129bp|location=Sequence derived from alignment at H-paniculata_contig12840:2489..3617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCCTTGACGGGACGCGAGTTGAGGAGGTTATGGTGCTATCGAGTGCAG
GTGTACATTTGATGGAACTATATCACGGGCAGGGACGATCACGTGATGAG
CGTTGTGATCGTCGTTTTTAGACAAATGGTCGTTTTATCCACCCAACCCG
CCCCGGTTCATTTAACATGTATTTGCATATTTGGCCTAAATATCCCCCGA
GTTACTGAGTACAAATGACCGGTTCATCTTCAAGTTCTTCCCCTTCCCTA
CTTCACAATGGAGGGTTGGACGCCATCGGAGTCGCGCTCTGTCGTTCTTC
ATCAGCAGTTGCTATCCGTTTAGTAGCATGACATTCTGATATACAGGATG
GCTAGTTGATGGTCATACTATGTCTTCAGCGCCAACACTAGGGGAATTGA
ATTCCCGGGGATTAACGTTACTACTCTGTTCGTCAAGCCACATGCACAGC
ACGGTACAGTAGTACGCATTTGTGCCATATCGTTGCAAACATTAACAGTA
GAACTTGGTTTGCTCTCAATTGAACTTTTGTCACATTCATGCGTCGAATT
TCATTTGCGCCTTTGTGCCGACGTGTTGTCGGACGACTCAGGTAACAGCA
CCAGTGGTGTTGGAGAACACTCGTCTGAATTGGTGTGGCCTCGGGGTCTA
GCTTTTGGAGCTGGGAGTTCTTCTGGCTTGCTATTCAGTGAACATTTAGG
TGCAGTTCGTCTATTATCGGATCCGGCGGGAGGCGTAGAGCCGGACACAA
TAGCACAGGAAGATGGCTACCCCGCTGCAGTAGCTGTTCGTGCGTTGAAG
TCGAGGGCCGCAAAGGAAGGACTGCTCGGCAAATTTTTCACCGAAACAGC
GCAATGAGAGTTACGCCGCGAAATACAATAAGTCGATGAAATGAAGATGC
TTCTTGCACCTGTAGGGGAGGGTTGGATCAAGCGAAATTACTCTAGCTCC
GGGGGAAGGCGGACAAACGTAGCACCGATGCGAACAAATGTAGACACACA
ATAGTAATGACAGGATTTGTCGCGACTTACTTGGATTGATGTTTTGCAGA
TATCCCCGGTAAACTGTTGGAAACGGGGCAAATTAGTACAAGGGAAGAAC
TCTAAAAAAGAGTTCTGTGTACACATAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12840:2489..3617+

>mRNA_H-paniculata_contig12840.1785.1 ID=mRNA_H-paniculata_contig12840.1785.1|Name=mRNA_H-paniculata_contig12840.1785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig12840:2489..3617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCTATCGAGTGCAGATGGTGCTATCGAGTGCAGGTAACAGCACCA
GTGGTGTTGGAGAACACTCGTCTGAATTGGTGTGGCCTCGGGGTCTAGCT
TTTGGAGCTGGGAGTTCTTCTGGCTTGCTATTCAGTGAACATTTAGGTGC
AGTTCGTCTATTATCGGATCCGGCGGGAGGCGTAGAGCCGGACACAATAG
CACAGGAAGATGGCTACCCCGCTGCAGTAGCTGTTCGTGCGTTGAAGTCG
AGGGCCGCAAAGGAAGGACTGCTCGGCAAATTTTTCACCGAAACAGCGCA
ATGAGTAACAGCACCAGTGGTGTTGGAGAACACTCGTCTGAATTGGTGTG
GCCTCGGGGTCTAGCTTTTGGAGCTGGGAGTTCTTCTGGCTTGCTATTCA
GTGAACATTTAGGTGCAGTTCGTCTATTATCGGATCCGGCGGGAGGCGTA
GAGCCGGACACAATAGCACAGGAAGATGGCTACCCCGCTGCAGTAGCTGT
TCGTGCGTTGAAGTCGAGGGCCGCAAAGGAAGGACTGCTCGGCAAATTTT
TCACCGAAACAGCGCAATGA
back to top