mRNA_H-paniculata_contig12836.1781.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12836.1781.1
Unique NamemRNA_H-paniculata_contig12836.1781.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12836.1781.1 vs. uniprot
Match: D8LRY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY7_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-14
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   10 HRDPVVFVGFRDRVSLSMVTLDTSGLLCVWQYAKEYLSGFGWYKPHK 150
            HR  V+FVGF+D VSL+MVTLD SGLLCVW Y+ +  SGFGWY P K
Sbjct:  319 HRHSVIFVGFKDHVSLTMVTLDVSGLLCVWPYSADAFSGFGWYTPSK 365
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BLAST of mRNA_H-paniculata_contig12836.1781.1 vs. uniprot
Match: A0A6H5K8K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-14
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   10 HRDPVVFVGFRDRVSLSMVTLDTSGLLCVWQYAKEYLSGFGWYKPHK 150
            HR  V+FVGF+D VSL+MVTLD SGLLCVW Y+ +  SGFGWY P K
Sbjct: 1180 HRHSVIFVGFKDHVSLTMVTLDVSGLLCVWPYSADAFSGFGWYTPSK 1226
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BLAST of mRNA_H-paniculata_contig12836.1781.1 vs. uniprot
Match: UPI0014554ABC (uncharacterized protein LOC117298815 isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI0014554ABC)

HSP 1 Score: 52.8 bits (125), Expect = 1.140e-6
Identity = 20/45 (44.44%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   10 HRDPVVFVGFRDRVSLSMVTLDTSGLLCVWQYAKEYLSGFGWYKP 144
            H+ P++F+GF      +MV++DTSGL+C+W+  +E+ S FGW++P
Sbjct:  599 HKSPLMFLGFLGNHG-NMVSMDTSGLICIWESNREWWSHFGWFEP 642
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BLAST of mRNA_H-paniculata_contig12836.1781.1 vs. uniprot
Match: A0A2C9LW31_BIOGL (Uncharacterized protein n=2 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9LW31_BIOGL)

HSP 1 Score: 52.0 bits (123), Expect = 2.140e-6
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   10 HRDPVVFVGFRDRVSLSMVTLDTSGLLCVWQYAKEYLSGFGWYKPHK 150
            H+ P++ + F   +   M+T+D SGL+C+W+Y K  LSGF W+ P K
Sbjct:  682 HKHPIIHLDFVGNIG-KMITVDRSGLICLWKYDKAQLSGFDWFLPEK 727
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12836.1781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LRY7_ECTSI1.120e-1468.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8K0_9PHAE1.120e-1468.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0014554ABC1.140e-644.44uncharacterized protein LOC117298815 isoform X1 n=... [more]
A0A2C9LW31_BIOGL2.140e-642.55Uncharacterized protein n=2 Tax=Biomphalaria glabr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12836contigH-paniculata_contig12836:460..609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.612974-CDS-H-paniculata_contig12836:459..6091622929003.612974-CDS-H-paniculata_contig12836:459..609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12836 460..609 +
1691480698.0699768-CDS-H-paniculata_contig12836:459..6091691480698.0699768-CDS-H-paniculata_contig12836:459..609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12836 460..609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12836.1781.1prot_H-paniculata_contig12836.1781.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12836 460..609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12836.1781.1

>prot_H-paniculata_contig12836.1781.1 ID=prot_H-paniculata_contig12836.1781.1|Name=mRNA_H-paniculata_contig12836.1781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
RCVHRDPVVFVGFRDRVSLSMVTLDTSGLLCVWQYAKEYLSGFGWYKPHK
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mRNA from alignment at H-paniculata_contig12836:460..609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12836.1781.1 ID=mRNA_H-paniculata_contig12836.1781.1|Name=mRNA_H-paniculata_contig12836.1781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig12836:460..609+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTGTGTGCATAGAGACCCGGTGGTGTTCGTGGGGTTCCGAGACCGCGT
GTCCCTTTCAATGGTGACCCTCGACACTTCGGGGTTGCTCTGCGTATGGC
AATACGCCAAAGAATATCTGTCAGGGTTCGGATGGTACAAGCCACATAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12836:460..609+

>mRNA_H-paniculata_contig12836.1781.1 ID=mRNA_H-paniculata_contig12836.1781.1|Name=mRNA_H-paniculata_contig12836.1781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig12836:460..609+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTGTGTGCATAGAGACCCGGTGGTGTTCGTGGGGTTCCGAGACCGCGT
GTCCCTTTCAATGGTGACCCTCGACACTTCGGGGTTGCTCTGCGTATGGC
AATACGCCAAAGAATATCTGTCAGGGTTCGGATGGTACAAGCCACATAAG
CGCTGTGTGCATAGAGACCCGGTGGTGTTCGTGGGGTTCCGAGACCGCGT
GTCCCTTTCAATGGTGACCCTCGACACTTCGGGGTTGCTCTGCGTATGGC
AATACGCCAAAGAATATCTGTCAGGGTTCGGATGGTACAAGCCACATAAG
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