mRNA_H-paniculata_contig12832.1779.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12832.1779.1
Unique NamemRNA_H-paniculata_contig12832.1779.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12832.1779.1 vs. uniprot
Match: D8LJK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK8_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 1.620e-92
Identity = 167/322 (51.86%), Postives = 203/322 (63.04%), Query Frame = 1
Query:    1 IYSCSRDTTVRQWHRSAAAGGQGGEEGGGALQVFEGHVLACSAVAISADEQTLCSGSRDTSVRLWDVKTGDCQSSVKAPRNLVTCLQYLPPSSGGPTSSSAVVIQAGEDLKLRVWDFREGRQMPTLILEGYKFFPLCLDVSTDGYYVLTSSKGFDSAGCEAKLWDLRKTAL-VQEYTGHTQDTTACIFLPASAGR---------GFGVS-------TSSGSTKVIATASKDETIKIFDQLTGELLLDHVNPGCGGYTGLAVQQDVMM---MLYASTITGGLYALRLEHAGEHQALNGNSDDDAASG-LRLRCTGFVEGNAIL 903
            +YSCSRDTTVRQW+RS  +          AL+VFEGH LAC+A+A+S DE+TL SGS       WDV+TG C SS K PRNLVTCL+ L   SGGP+SS   V+Q                   ++ ++GY FFPL LDVS+DG+ VLTS KGF+ AGCE KLWDLR   + V+EYTGHTQDTTAC+F+ +  G          G+G+S       ++  S  +IATASKD T+KI+D   G +L+DHV P CGGYTGLA+Q+D      + YASTITGGLYALRLE   E  A  G S      G LRLRC GFV GN IL
Sbjct:    1 MYSCSRDTTVRQWNRSGIS----------ALRVFEGHDLACTAIALSEDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCL---SGGPSSS---VVQXXXXXXXXXXXXXXXGLRSSMTVDGYTFFPLFLDVSSDGHQVLTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDGGSGAREGGYGLSPAPWPSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGGPVFYASTITGGLYALRLE---EKVATAGTSRTGLGEGGLRLRCVGFVRGNPIL 303          
BLAST of mRNA_H-paniculata_contig12832.1779.1 vs. uniprot
Match: A0A6H5JBE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE9_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 3.130e-81
Identity = 165/356 (46.35%), Postives = 195/356 (54.78%), Query Frame = 1
Query:    1 IYSCSRDTTVRQWHRSAAAGGQGGEEGGGALQVFEGHVLACSAVAISA----------------------------------DEQTLCSGSRDTSVRLWDVKTGDCQSSVKAPRNLVTCLQYLPPSSGGPTSSSAVVIQAGEDLKLRVWDFREGRQMPTLILEGYKFFPLCLDVSTDGYYVLTSSKGFDSAGCEAKLWDLRKTAL-VQEYTGHTQDTTACIFLPASAG---------RGFGVSTSSG-------STKVIATASKDETIKIFDQLTGELLLDHVNPGCGGYTGLAVQQDVMM---MLYASTITGGLYALRLEHAGEHQALNGNSDDDAASG-LRLRCTGFVEGNAIL 903
            +YSCSRDTTVRQW+RS  +          AL+VFEGH LAC+A+A+S                                   DE+ L SGSRDTS+R WDV+TG C SS K PRNLVTCL+ L     G  SSS  V Q GEDLKLRVWD REG   P++ ++GY FFP                           LWDLR   + V+EYTGHTQDTTAC+F+ +  G          G+GVS S         S  +IATASKD T+KI+D   G +L+DHV P CGGYTGLA+Q+D      + YASTITGGLYALRLE   E  A    S  +   G LRLRC GFV GN IL
Sbjct:    1 MYSCSRDTTVRQWNRSGIS----------ALRVFEGHDLACTAIALSEGDVPSQRKILPARQSILSKLFHDDDPPPYEHSLEDEKALYSGSRDTSIRAWDVQTGQCISSAKVPRNLVTCLKCL----SGELSSS--VAQGGEDLKLRVWDAREGGLRPSMTIDGYTFFP---------------------------LWDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDDGSGVEENGYGVSPSPSTSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLE---EEVATAAQSQTELQEGGLRLRCVGFVRGNPIL 310          
BLAST of mRNA_H-paniculata_contig12832.1779.1 vs. uniprot
Match: A0A835ZHR6_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR6_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.540e-69
Identity = 133/278 (47.84%), Postives = 165/278 (59.35%), Query Frame = 1
Query:    4 YSCSRDTTVRQWHRSAAAGGQGGEEGGGALQVFEGHVLACSAVAISADEQTLCSGSRDTSVRLWDVKTGDCQSSVKAPRNLVTCLQYLPPSSGGPTSSSAVVIQAGEDLKLRVWDFREGRQMPTLILEGYKFFPLCLDVSTDGYYVLTSSKGFDSAGCEAKLWDLRKTALVQEYTGHTQDTTACIFLPASAGRGFGVSTSSGSTKVIATASKDETIK--IFDQLTGELLLDHVNPGCGGYTGLAVQQDVMMMLYASTITGGLYALRL---EHAGEHQA 822
            YS SRDTT+ QW            +G G L  + GH L  SA+ +SADE  L SGSRDTSVRLWDV TG  +  V  PRNLVTCL+ +P   G     + VV+Q GEDLKLR+WDFR    +P   L+G+ +FPLCLDVS DG Y+LT SKGF+S GCE +LWD R   +VQEY GH QD TAC+  PA+      ++ SSG    + TASKD+TIK  ++ + +G+LL D   P                 L A+T TGGLY L+L   E  GE  A
Sbjct:    7 YSASRDTTLAQWG-----------QGEGPLATYRGHTLTVSALDLSADETHLWSGSRDTSVRLWDVSTGQQRGMVATPRNLVTCLKCMPGEEG-----TNVVVQGGEDLKLRLWDFRTPSSVPAQTLDGFVYFPLCLDVSEDGNYLLTGSKGFNSVGCEGRLWDRRTGQVVQEYNGHAQDVTACLLAPAA------LAASSGGA--VITASKDQTIKARVWGRESGQLLSDFAEPH---------------RLCAATFTGGLYDLQLSEGEAGGETAA 245          
BLAST of mRNA_H-paniculata_contig12832.1779.1 vs. uniprot
Match: K3WSF6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSF6_GLOUD)

HSP 1 Score: 174 bits (440), Expect = 2.600e-48
Identity = 95/251 (37.85%), Postives = 136/251 (54.18%), Query Frame = 1
Query:    1 IYSCSRDTTVRQWHRSAAAGGQGGEEGGGALQ--VFEGHVLACSAVAISADEQTLCSGSRDTSVRLWDVKTGDCQSSVKAPRNLVTCLQYLPPSSGGPTSSSAVVIQAGEDLKLRVWDFREGRQMPTLILEGYKFFPLCLDVSTDGYYVLTSSKGFDSAGCEAKLWDLRKTALVQEYTGHTQDTTACIFLPASAGRGFGVSTSSGSTKVIA-------TASKDETIKIFDQLTGELLLDHVNPGCGGYTGL 726
            IYSCSRDTT+      A+             Q     GH L  S +A++ DE +LCSG RDT    WD+ TG  ++     +N++TC +++P           +V+Q  EDL L++WD R   + P     GY +F LC+DVS DG Y LTSSKGF+  GCE ++WD R    + E+ GH QDTT+C FLP++ G     S +S +  V A       TASKD ++K++D  T  +L + + P  G +T +
Sbjct:   79 IYSCSRDTTIALTSHIASKSSSPSSSSRKQPQPVYLRGHHLNVSTIAVNDDETSLCSGGRDTQTIFWDLTTGRLKAKNTTSQNVITCSKWVP--------VEPLVVQGSEDLTLKLWDERTNLRAPAQSFHGYVYFALCVDVSPDGNYFLTSSKGFNGVGCEVRIWDRRTGKQLYEFNGHQQDTTSCCFLPSATGSSSNDSVTSPADSVRASAIPIPVTASKDGSVKVWDAATSSVLCEALEPSGGMFTSI 321          
BLAST of mRNA_H-paniculata_contig12832.1779.1 vs. uniprot
Match: UPI00109BE923 (WD repeat-containing protein 31 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BE923)

HSP 1 Score: 169 bits (428), Expect = 1.170e-47
Identity = 101/267 (37.83%), Postives = 143/267 (53.56%), Query Frame = 1
Query:    1 IYSCSRDTTVRQWHRSAAAGGQGGEEGGGALQVFEGHVLACSAVAISADEQTLCSGSRDTSVRLWDVKTGDCQSSVKAPRNLVTCLQYLPPSSGGPTSSSAVVIQAGEDLKLRVWDFREGRQMPTLILEGYKFFPLCLDVSTDGYYVLTSSKGFDSAGCEAKLWDLRKTALVQEYTGHTQDTTACIFLPASAGRGFGVSTSSGSTKVIATASKDETIKIFDQLTGELLLDHVNPGCGGYTGLAVQQDVMMMLYASTITGGLYALRLE 801
            +YS SRD T++ W          G+     +  +EGH L  + + ++ D+  L SGSRD SVRLWDV TG C S  +  RNLV+C++++P         S  V+Q GED  ++VWD R     P       ++F  C D S DG Y+LT + GF+ +GCEA LWDLR+   V +Y GHTQ  +ACIFLP + G             +IATAS D T++I+ + T E +L    PG G  T L    +  + +  S+   G+Y L L+
Sbjct:    3 VYSSSRDKTIKLWKI--------GDCHQDPIDTYEGHKLVVTGIDLNNDQTVLFSGSRDNSVRLWDVVTGQCISHNEVTRNLVSCVKWIP--------QSHEVVQTGEDKMVKVWDTRT--LTPAFTFPPKQYFQTCCDCSDDGKYILTCNNGFNRSGCEATLWDLRQKKQVYQYVGHTQTASACIFLPFTEGI--------APHPLIATASHDSTLRIWKRETKECILVEEFPGSGPLTSLTAWPNGGLCV--SSFHVGIYKLNLQ 241          
BLAST of mRNA_H-paniculata_contig12832.1779.1 vs. uniprot
Match: A0A067CE75_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CE75_SAPPC)

HSP 1 Score: 169 bits (428), Expect = 9.710e-47
Identity = 97/245 (39.59%), Postives = 136/245 (55.51%), Query Frame = 1
Query:    1 IYSCSRDTTVRQWHRSAAAGGQGGEEGGGALQVFEGHVLACSAVAISADEQTLCSGSRDTSVRLWDVKTGDCQSSVKAPRNLVTCLQYLPPSSGGPTSSSAVVIQAGEDLKLRVWDFREGRQMPTLILEGYKFFPLCLDVSTDGYYVLTSSKGFDSAGCEAKLWDLRKTALVQEYTGHTQDTTACIFLPASAGRGFGVSTSSGSTKVIATASKDETIKIFDQLTGELLLDHVNPGCGGYTGLAVQ 735
            +Y+CSRDTT+ Q   +++      +    A Q F GH L+ SA+AI+A E  L SGSRDT   LWDV TG         +N+VTC+ ++P           +V Q GEDL +R+WD R  +  P   ++GY +FPL +D S DG Y+LTSSKGF+  GCE ++WD R   LV E   H QD TAC ++       F V           TASKD +++I++  +GEL+    +   G +TG+A Q
Sbjct:   93 LYACSRDTTISQQAIASS------DVPAAAPQSFTGHTLSVSAIAINAPETHLASGSRDTGTSLWDVTTGTRVQHTTTSQNIVTCMTWVP-------QCETLVAQGGEDLCVRLWDARSWKS-PAQTIQGYVYFPLSIDASDDGNYLLTSSKGFNGVGCEGRVWDRRTGKLVTEMHVHLQDATACAYVRHK--NAFAV-----------TASKDSSLRIWNSASGELVASSFDQSSGMFTGVACQ 310          
BLAST of mRNA_H-paniculata_contig12832.1779.1 vs. uniprot
Match: A0A2D4C2N3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2N3_PYTIN)

HSP 1 Score: 165 bits (418), Expect = 5.770e-45
Identity = 102/271 (37.64%), Postives = 146/271 (53.87%), Query Frame = 1
Query:    1 IYSCSRDTTVR---QWHRSAAAGGQGGEEGGGALQVFEGHVLACSAVAISADEQTLCSGSRDTSVRLWDVKTGDCQSSVKAPRNLVTCLQYLPPSSGGPTSSSAVVIQAGEDLKLRVWDFREGRQMPTLILEGYKFFPLCLDVSTDGYYVLTSSKGFDSAGCEAKLWDLRKTALVQEYTGHTQDTTACIFLPASAGRGFGVSTSSGSTKVIATASKDETIKIFDQLTG-ELLLDHVNPGCGGYTGLAVQQDVMMMLYASTITGGLYALRLE 801
            IYSCSRDTTV      H +AA            L++  GH L  S++A+  DE TLCSG RDT   LWD+ T   ++     +N+VTC ++ P           VV Q  EDL +++WD R   + P  +L GY +FPLCLDVS DG ++LTSSKGF+  G E ++WD R    + ++ GH QD TAC FLPA       +  +  S     +ASKD TIK++D +    ++ +  +     YT +A     +++  AS   G ++ALR +
Sbjct:  113 IYSCSRDTTVAITAPEHDTAAP-----------LRL-SGHSLNVSSIAVDDDESTLCSGGRDTQTILWDLATQHVKARNTTAQNVVTCAKWFP--------LERVVAQGSEDLSVKLWDERTALRAPAQVLRGYVYFPLCLDVSRDGLFLLTSSKGFNGVGGEVRVWDRRMARQLLQFEGHQQDATACCFLPA-------IDDAVSSVPTPVSASKDGTIKVWDVMDPPSVVCEERDAAAEMYTCVASMGGGVVL--ASAFGGSVHALRFD 354          
BLAST of mRNA_H-paniculata_contig12832.1779.1 vs. uniprot
Match: T0QNJ3_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QNJ3_SAPDV)

HSP 1 Score: 164 bits (414), Expect = 1.690e-44
Identity = 92/243 (37.86%), Postives = 132/243 (54.32%), Query Frame = 1
Query:    1 IYSCSRDTTVRQWHRSAAAGGQGGEEGGGALQVFEGHVLACSAVAISADEQTLCSGSRDTSVRLWDVKTGDCQSSVKAPRNLVTCLQYLPPSSGGPTSSSAVVIQAGEDLKLRVWDFREGRQMPTLILEGYKFFPLCLDVSTDGYYVLTSSKGFDSAGCEAKLWDLRKTALVQEYTGHTQDTTACIFLPASAGRGFGVSTSSGSTKVIATASKDETIKIFDQLTGELLLDHVNPGCGGYTGLA 729
            +Y+CSRDTT+ Q   S++       +   A Q F GH L+ SA+AI+A E  L SGSRDT   LWDV T          +N+VTC+ ++P           ++ Q GEDL +R+WD R  +  P   ++GY +FPL +D S DG Y+LTSSKGF+  GCE ++WD R   LV E  GH QD +AC ++                     TASKD +++I++  +GEL+    +   G +T +A
Sbjct:   98 LYACSRDTTISQHVLSSS-------DAPTAPQSFTGHTLSVSALAINAAESNLASGSRDTGTSLWDVTTRARVQHTTTSQNIVTCMTWVP-------QCETLLAQGGEDLCVRLWDTRSWKS-PAQTIQGYVYFPLSIDASDDGNYLLTSSKGFNGVGCEGRVWDRRTGKLVTEMHGHLQDASACAYMR-------------HKNAYAVTASKDSSLRIWNSASGELITSSFDHSSGMFTSVA 312          
BLAST of mRNA_H-paniculata_contig12832.1779.1 vs. uniprot
Match: UPI00109B732D (WD repeat-containing protein 31 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109B732D)

HSP 1 Score: 162 bits (410), Expect = 4.070e-44
Identity = 93/237 (39.24%), Postives = 131/237 (55.27%), Query Frame = 1
Query:   91 LQVFEGHVLACSAVAISADEQTLCSGSRDTSVRLWDVKTGDCQSSVKAPRNLVTCLQYLPPSSGGPTSSSAVVIQAGEDLKLRVWDFREGRQMPTLILEGYKFFPLCLDVSTDGYYVLTSSKGFDSAGCEAKLWDLRKTALVQEYTGHTQDTTACIFLPASAGRGFGVSTSSGSTKVIATASKDETIKIFDQLTGELLLDHVNPGCGGYTGLAVQQDVMMMLYASTITGGLYALRLE 801
            +  +EGH L  + + ++ D+  L SGSRD SVRLWDV TG C S  +  RNLV+C++++P         S  V+Q GED  ++VWD R     P       ++F  C D S DG Y+LT + GF+ +GCEA LWDLR+   V +Y GHTQ  +ACIFLP + G             +IATAS D T++I+ + T E +L    PG G  T L    +  + +  S+   G+Y L L+
Sbjct:  100 IDTYEGHKLVVTGIDLNNDQTVLFSGSRDNSVRLWDVVTGQCISHNEVTRNLVSCVKWIP--------QSHEVVQTGEDKMVKVWDTRT--LTPAFTFPPKQYFQTCCDCSDDGKYILTCNNGFNRSGCEATLWDLRQKKQVYQYVGHTQTASACIFLPFTEGI--------APHPLIATASHDSTLRIWKRETKECILVEEFPGSGPLTSLTAWPNGGLCV--SSFHVGIYKLNLQ 316          
BLAST of mRNA_H-paniculata_contig12832.1779.1 vs. uniprot
Match: A0A8K1CV93_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CV93_PYTOL)

HSP 1 Score: 163 bits (413), Expect = 5.300e-44
Identity = 101/269 (37.55%), Postives = 146/269 (54.28%), Query Frame = 1
Query:    1 IYSCSRDTTVRQWHRSAAAGGQGGEEGGGALQVFEGHVLACSAVAISADEQTLCSGSRDTSVRLWDVKTGDCQSSVKAPRNLVTCLQYLPPSSGGPTSSSAVVIQAGEDLKLRVWDFREGRQMPTLILEGYKFFPLCLDVSTDGYYVLTSSKGFDSAGCEAKLWDLRKTALVQEYTGHTQDTTACIFLP-----ASAGRGFGVSTSSGSTKVIATASKDETIKIFD-QLTGELLLDHVNPGCGGYTGLAVQQDVMMMLYASTITGGLYA 789
            +YS SRDTT+      +AA      E   A    +GH L  SA+A+  DE +LCSG RDT    WD+ T   +S     +N++TC +++P        +  VV+Q  EDL +++WD R   + P   L GY +FPLCLDVS DG Y +TSSKGF+  G E ++WD R    + ++ GH QD +AC FLP     +S G     + S+G    ++ ASKD +IK+++     +LL +   P    +T LA   D   +L A+T  G L+A
Sbjct:  114 LYSSSRDTTIAVTTPVSAA------ETESASIKLQGHTLNVSAIAVDTDETSLCSGGRDTQTMFWDLTTAKIKSKNTTAQNVITCSKWVP--------TEHVVLQGSEDLSVKLWDERSALRTPVQTLRGYVYFPLCLDVSRDGLYFMTSSKGFNGVGAEVRVWDRRVGKQLLQFEGHQQDASACCFLPRGVLDSSEGEAPVPNASNGIPTPVS-ASKDGSIKVWNVNAENQLLCEANEPSGRMFTSLASTGDDGTVL-AATFNGDLHA 366          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12832.1779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJK8_ECTSI1.620e-9251.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBE9_9PHAE3.130e-8146.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZHR6_9STRA1.540e-6947.84WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
K3WSF6_GLOUD2.600e-4837.85Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
UPI00109BE9231.170e-4737.83WD repeat-containing protein 31 n=1 Tax=Exaiptasia... [more]
A0A067CE75_SAPPC9.710e-4739.59Uncharacterized protein (Fragment) n=1 Tax=Saprole... [more]
A0A2D4C2N3_PYTIN5.770e-4537.64Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
T0QNJ3_SAPDV1.690e-4437.86Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
UPI00109B732D4.070e-4439.24WD repeat-containing protein 31 n=1 Tax=Exaiptasia... [more]
A0A8K1CV93_PYTOL5.300e-4437.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12832contigH-paniculata_contig12832:2738..7172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.1
Seed ortholog evalue4.7e-75
Seed eggNOG ortholog2880.D8LJK8
Preferred nameWDR31
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of Golgi to plasma membrane protein transport
EggNOG OGsKOG0279@1,KOG0279@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size906
Cds size906
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12832.1779.1prot_H-paniculata_contig12832.1779.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12832 2738..7172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.318667-CDS-H-paniculata_contig12832:2737..28821622929003.318667-CDS-H-paniculata_contig12832:2737..2882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12832 2738..2882 +
1691480697.9469833-CDS-H-paniculata_contig12832:2737..28821691480697.9469833-CDS-H-paniculata_contig12832:2737..2882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12832 2738..2882 +
1622929003.3342323-CDS-H-paniculata_contig12832:3277..35371622929003.3342323-CDS-H-paniculata_contig12832:3277..3537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12832 3278..3537 +
1691480697.9598062-CDS-H-paniculata_contig12832:3277..35371691480697.9598062-CDS-H-paniculata_contig12832:3277..3537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12832 3278..3537 +
1622929003.3486016-CDS-H-paniculata_contig12832:3704..37851622929003.3486016-CDS-H-paniculata_contig12832:3704..3785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12832 3705..3785 +
1691480697.9685307-CDS-H-paniculata_contig12832:3704..37851691480697.9685307-CDS-H-paniculata_contig12832:3704..3785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12832 3705..3785 +
1622929003.3646402-CDS-H-paniculata_contig12832:5270..54571622929003.3646402-CDS-H-paniculata_contig12832:5270..5457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12832 5271..5457 +
1691480697.9782164-CDS-H-paniculata_contig12832:5270..54571691480697.9782164-CDS-H-paniculata_contig12832:5270..5457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12832 5271..5457 +
1622929003.3779235-CDS-H-paniculata_contig12832:6819..68841622929003.3779235-CDS-H-paniculata_contig12832:6819..6884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12832 6820..6884 +
1691480697.9870968-CDS-H-paniculata_contig12832:6819..68841691480697.9870968-CDS-H-paniculata_contig12832:6819..6884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12832 6820..6884 +
1622929003.3925116-CDS-H-paniculata_contig12832:7004..71721622929003.3925116-CDS-H-paniculata_contig12832:7004..7172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12832 7005..7172 +
1691480697.9968371-CDS-H-paniculata_contig12832:7004..71721691480697.9968371-CDS-H-paniculata_contig12832:7004..7172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12832 7005..7172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12832.1779.1

>prot_H-paniculata_contig12832.1779.1 ID=prot_H-paniculata_contig12832.1779.1|Name=mRNA_H-paniculata_contig12832.1779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=302bp
IYSCSRDTTVRQWHRSAAAGGQGGEEGGGALQVFEGHVLACSAVAISADE
QTLCSGSRDTSVRLWDVKTGDCQSSVKAPRNLVTCLQYLPPSSGGPTSSS
AVVIQAGEDLKLRVWDFREGRQMPTLILEGYKFFPLCLDVSTDGYYVLTS
SKGFDSAGCEAKLWDLRKTALVQEYTGHTQDTTACIFLPASAGRGFGVST
SSGSTKVIATASKDETIKIFDQLTGELLLDHVNPGCGGYTGLAVQQDVMM
MLYASTITGGLYALRLEHAGEHQALNGNSDDDAASGLRLRCTGFVEGNAI
L*
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mRNA from alignment at H-paniculata_contig12832:2738..7172+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12832.1779.1 ID=mRNA_H-paniculata_contig12832.1779.1|Name=mRNA_H-paniculata_contig12832.1779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4435bp|location=Sequence derived from alignment at H-paniculata_contig12832:2738..7172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTACAGCTGCTCTCGCGACACGACCGTGCGACAGTGGCATCGATCGGC GGCGGCCGGAGGGCAGGGGGGGGAGGAAGGGGGCGGTGCGCTTCAAGTAT TCGAGGGTCACGTGCTTGCGTGCAGTGCGGTGGCGATCAGTGCAGGTATA CTGATTTGCTCCATATAAAAGGAAATCGAGCGTACTATAGTTCGTGCACT CTAGAACGTAAATCGTGTCTCGAAATGAAGTTGGCCGTATGGTCTCACTG GAAGAAGAGGGAGAGGGAGAGAGAGAAGGGGGTGGGGGGTAAGGGAGGGA GGGAGAAAGAACGTGGAATGAAAGAGAACTTGACATAGCACATTTTTCCC TAGCTCGACATTCAGTACAATGAGTGATGAGCGATCATGCTCATCAGCGG CAGATATGTGCGCGCACCTCAAATAATTTAAATCCCTACGACTGTAAAAT TCGCAAACTTAATCGCTATAACGTGAACCCTACCAGTAACCCCCACCCCC TCGGGCACAACGTGAATGAAATTTTCGCCCTCAATCGAAGACGAACAGAC GCTATGCTCGGGCTCTCGAGACACTAGCGTTCGCTTGTGGGACGTGAAAA CGGGAGATTGTCAGAGTTCTGTCAAGGCTCCGCGGAATCTCGTGACCTGT CTCCAGTACCTTCCTCCTTCTAGTGGGGGACCGACATCATCTTCAGCGGT GGTGATACAGGCGGGGGAGGATCTCAAGCTTCGGGTTTGGGATTTTCGAG AGGGGCGGCAGATGCCAACCTTGATACTTGAGGGGTACAAGTTTTTTCCT GTGAGTATTGTGTTATGTCATTGCCTGTTTTGTTGAAGCATACGCGTACA ACGACCCCCTAATTGTAACTCACTCACCACTTGCCATCACCTGCACGTGC AAAACGCGTTCTGTGGAACCGCCTTGGATACCTGTCTGACTTCGTGTTGA CATGGATGTTTTGGTAGCTATGCCTCGACGTTTCGACGGATGGGTACTAC GTGCTGACTTCCAGCAAAGGGTTCGACAGCGCCGGTTGCGAGGCAAAGGT CAGTCATCATACAAACCAAATGAAGGGGTGGTGGGGTGGGACGCCAGCAC GCATTTCTTAGCCGTCAAAGGACCATTAACTCAGCACATGCATCTCACTG ACGAGGAATATCCATCTTACCGACTAACGACAAGTGCTGAGATCCAATGA GGGCTACGTGAAGCGATTTAGATCTGGGGTGTTGGGTCAATAGGATTCAT GGCACCGCTGCATTCGTCGGCGCATAGTCTACGACCATACAAATTCTAAC AGAGGGCTGATCCAACTTATACATTACCTATATATATATATATATATATA TATACACACGAGCGAAAAAAGAAGAAGAGACCAAGTTTGCTTATTTAATA TCGGCCAGTTGTGTCACCCAACCCGGCATGCGTCTTGCACTGGATCCCTG CGAAACCTTGAACGAGTATTATAGTAACCAGTTGCGACGCTACTGCTGCT GTAGAGTTGGGCACGGTAGTAGCTGCTACCCCGCGGATTGCTGCAGCTTA CATTGCGGTATAACTACTTCGTGAAAAGCCGAGACGTTGAGATTGTGGAG ATTCTATATCTTGAACATACCTAGTAAATGCTACTTTTTCTGGAACGACT ACAGCCCTGGGCCCGGTTCAGTTCACAGGCATATTAAAAGAGTGGGTTGT GATACGGTGCACCCCTTACAACAAGTTGTATCCCTCACGCTGTCGCCCCC CCCCCCCTGCTAGCTAATACAGACAAGGGCAATGCGATATTCGATATTAG GAGATAAAAAATGGTCTGGCTATGCAAGAGTTGCGGCCGATAGGATAGAC AGAACCATTTTCAGTCACCATGTGCAGAGAAAAAGACAATAGAATAGTGC TTGGTCCGCTTGGCGACGCGTGGTCAACGATCTACAATACCAGCTAAAGC ATGCGAAATCTGGAATCTGCGCCTCTCCTCTTTTTGTTTTGCACACTTGA GCACCGCCCCCCCCTGTTCCCCTGTTACTATTACTTGAGTTATGCACGCA CCTATGTATTCGTATACAACGAACTGCATGCATCTCAACCCTGCCCCCTC CTCTCCCTGCGCCGGCTCCGTCTTCTCGAGAACGCGCGGCCAATGGCTTA ACAACTACAGCGCGAAAACAAGCGCACATTCCCTGCCCCGCCCGTTCTCT GGCGCCGAGTTTTCGATCAGCGGTTTGAGTACTTTATTCAATCACACGCA TGCTGAGTATTTATACACACACATGTTGACACCCAAAATGGTCTTAACCT ACTCGCCGAGGAGGTGCGACAGGAAAGGTAGAAGATACATCAAGACAAGC AAACCCCGATGTGCGAAAGGTTGAAATGCGCGACCAAAACAGATAATACT AAGGTACATGTAGCTTGCAACGCTGCCATAGTCAGACGTTGCCAATTGGT GTGGTATTCTTTATGTTCTATTTGATACAATGTTCGCCCCCCCCCCCCCC CCCCACGCGCGCGTGCGCTCTTGTATTATTCAGCTCTGGGACCTGCGAAA AACCGCGTTAGTGCAAGAGTACACGGGGCACACACAGGATACTACGGCCT GTATATTTTTGCCGGCATCTGCAGGAAGGGGATTTGGCGTTTCAACATCA TCCGGTTCGACGAAGGTTATTGCCACGGCTTCGAAGGACGAAACAATAAA GATCTTCGACCAGTTGACTGGTACGTACAGCCATGTTTGCAATGTATCTG TCTTGTAGGTACTGTACTTCATACCGTTTGGTGGCGTCTCTTAAGCGAGG GATGCTGTGATGTATGATTGCTTATACCCTGTTTGCTGTGTTTTGTGTTT TCCATGCGCCACCCGCTGGAGCATTTTTGCAAAATGAAGAAAGTTTGCAA CAATACATGGTACAAACAGAAAATAGAAAAATAGAAATACTATATCCTTC TGATTCAATTTACAGCTCAAGAATAACATTTACAGTACATAACGTTACTT TCGTGTGAACATTATCATCTAGGAGCCGTGCAACGACAGAGGTGAGGTAT TGTGTAACTGGTCCGATCCTGGAGAAACACGAGATTTGTCCCCGATCTAA CATTGAAAAACAAGCACCATCCGGTACCAATGTATTCTGGGAAAGGATGA AATCATAACCCTATCATGGTATATTAGAGAAACATCCCCGGGGGTGGATG GGGGGGCAGGGTTGTGGTTTCTAACCATTTCTCCATTTCCCCCCCCCCTG TATCGTTTCAAGACACATAGACACGCAACGCGAGTGACGAATTAATCATA TGGCCTGTCAATTAGCTCTACTTGTTTGGTGGTAGGTAGCATGGAAATTC GGGTATTTACTTGTTGTGTGGAGCGAGTTGTACGTAGCACCATTGTGTGA CATAACAATAGTGGTCTTTAGGAACCGGCAGGTTCAACTTGCAAACAATG CACAGTAGGACGACCAAGCACAGACCCTATTCTAATTATAAAGTAGTGTA TTAGTGAAAAATACTCGACAAACTTGGACTACAAACACAAATATTTGCAG CTTGTACAGAATATGGCAACAATGGAGTCTCCTCTGATAGTTTACACGGA AATTGTGGGCAGCATGAGCGTGGACGAGGATGAGGCGTGGTGAAAGCGGT AGGAGTTAAGATAAGTCGCCTACGTAAACAGCACTCACGATCAATCGAGC CCCACTATTTCACAGTGAATGGTCGTGTAGTCTCTGAAAATACCACTTGT AGGTCTGTACTATTTGTACTCAGCAAGCACGGCGGGTCATCGTTGAGTTT CCATAATGCTGGTGTCTCTGCGCTGTTTCTTTCGTGACTTCCATTTCTTG ATATTCTGTTTTTGACACATCATCCCCTCCTCACCCCATACAACTTCGTC GGTATATAGAATCATCAGTCTGTCAGCAGCAGCAGCAGCATTGAAGTCCC TACTTCACGCTCACTTATTGTTATTATCGGCCGCATCCATAAACCTATTA CTACCGACACACGATACCACCGCCTCTCCTCTGCTTGTGGTTCGCTTGTA TATCGTCCCCCAAAAAACGTACGTTGGTGTAGGCGAGTTGCTGTTGGACC ACGTCAATCCAGGATGCGGCGGCTACACCGGGCTTGCGGTGCAGCAGGTG CAGCAGAAGGAGGTCAAGAGGAGAGTTATCGACAACAACGAAGTCGTTGT TAACACCAACGCCGACGATGCGCCGACGACGGAGACGGAAAACATCAGGG CTTACCAAGACGAAGAGGACGTGATGATGATGTTGTATGCATCAACTATC ACTGGAGGGTTGTATGCTCTACGATTAGAACACGCCGGGGAACACCAGGC GCTTAATGGTAACTCTGACGATGATGCCGCCAGTGGTTTGCGGTTGCGAT GTACCGGCTTCGTGGAAGGGAACGCAATATTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12832:2738..7172+

>mRNA_H-paniculata_contig12832.1779.1 ID=mRNA_H-paniculata_contig12832.1779.1|Name=mRNA_H-paniculata_contig12832.1779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at H-paniculata_contig12832:2738..7172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTACAGCTGCTCTCGCGACACGACCGTGCGACAGTGGCATCGATCGGC
GGCGGCCGGAGGGCAGGGGGGGGAGGAAGGGGGCGGTGCGCTTCAAGTAT
TCGAGGGTCACGTGCTTGCGTGCAGTGCGGTGGCGATCAGTGCAGATCTA
CAGCTGCTCTCGCGACACGACCGTGCGACAGTGGCATCGATCGGCGGCGG
CCGGAGGGCAGGGGGGGGAGGAAGGGGGCGGTGCGCTTCAAGTATTCGAG
GGTCACGTGCTTGCGTGCAGTGCGGTGGCGATCAGTGCAGACGAACAGAC
GCTATGCTCGGGCTCTCGAGACACTAGCGTTCGCTTGTGGGACGTGAAAA
CGGGAGATTGTCAGAGTTCTGTCAAGGCTCCGCGGAATCTCGTGACCTGT
CTCCAGTACCTTCCTCCTTCTAGTGGGGGACCGACATCATCTTCAGCGGT
GGTGATACAGGCGGGGGAGGATCTCAAGCTTCGGGTTTGGGATTTTCGAG
AGGGGCGGCAGATGCCAACCTTGATACTTGAGGGGTACAAGTTTTTTCCT
ACGAACAGACGCTATGCTCGGGCTCTCGAGACACTAGCGTTCGCTTGTGG
GACGTGAAAACGGGAGATTGTCAGAGTTCTGTCAAGGCTCCGCGGAATCT
CGTGACCTGTCTCCAGTACCTTCCTCCTTCTAGTGGGGGACCGACATCAT
CTTCAGCGGTGGTGATACAGGCGGGGGAGGATCTCAAGCTTCGGGTTTGG
GATTTTCGAGAGGGGCGGCAGATGCCAACCTTGATACTTGAGGGGTACAA
GTTTTTTCCTCTATGCCTCGACGTTTCGACGGATGGGTACTACGTGCTGA
CTTCCAGCAAAGGGTTCGACAGCGCCGGTTGCGAGGCAAAGCTATGCCTC
GACGTTTCGACGGATGGGTACTACGTGCTGACTTCCAGCAAAGGGTTCGA
CAGCGCCGGTTGCGAGGCAAAGCTCTGGGACCTGCGAAAAACCGCGTTAG
TGCAAGAGTACACGGGGCACACACAGGATACTACGGCCTGTATATTTTTG
CCGGCATCTGCAGGAAGGGGATTTGGCGTTTCAACATCATCCGGTTCGAC
GAAGGTTATTGCCACGGCTTCGAAGGACGAAACAATAAAGATCTTCGACC
AGTTGACTGCTCTGGGACCTGCGAAAAACCGCGTTAGTGCAAGAGTACAC
GGGGCACACACAGGATACTACGGCCTGTATATTTTTGCCGGCATCTGCAG
GAAGGGGATTTGGCGTTTCAACATCATCCGGTTCGACGAAGGTTATTGCC
ACGGCTTCGAAGGACGAAACAATAAAGATCTTCGACCAGTTGACTGGCGA
GTTGCTGTTGGACCACGTCAATCCAGGATGCGGCGGCTACACCGGGCTTG
CGGTGCAGCAGGCGAGTTGCTGTTGGACCACGTCAATCCAGGATGCGGCG
GCTACACCGGGCTTGCGGTGCAGCAGGACGTGATGATGATGTTGTATGCA
TCAACTATCACTGGAGGGTTGTATGCTCTACGATTAGAACACGCCGGGGA
ACACCAGGCGCTTAATGGTAACTCTGACGATGATGCCGCCAGTGGTTTGC
GGTTGCGATGTACCGGCTTCGTGGAAGGGAACGCAATATTATGAGACGTG
ATGATGATGTTGTATGCATCAACTATCACTGGAGGGTTGTATGCTCTACG
ATTAGAACACGCCGGGGAACACCAGGCGCTTAATGGTAACTCTGACGATG
ATGCCGCCAGTGGTTTGCGGTTGCGATGTACCGGCTTCGTGGAAGGGAAC
GCAATATTATGA
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